Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G219200 Glycine max HOM05D005969 ORTHO05D007407 1.8e-218 762.3 382 100.0
VMungo0331G0028 Vigna mungo HOM05D005969 ORTHO05D007407 1.2e-185 653.3 383 86.4
Phvul.010G161700 Phaseolus vulgaris HOM05D005969 ORTHO05D007407 2.8e-179 632.1 376 85.1
Lj3g0024544 Lotus japonicus HOM05D005969 ORTHO05D007407 1.1e-175 620.2 388 82.7
Lalb_Chr01g0012061 Lupinus albus HOM05D005969 ORTHO05D007407 2.0e-169 599.4 346 86.4
Medtr4g007190 Medicago truncatula HOM05D005969 ORTHO05D007407 2.9e-168 595.5 387 78.8
Psat7g262880 Pisum sativum HOM05D005969 ORTHO05D007407 3.5e-166 588.6 388 78.1
arahy.Tifrunner.gnm1.ann1.M9PPGY Arachis hypogaea HOM05D005969 ORTHO05D007407 1.7e-165 586.3 391 77.7
arahy.Tifrunner.gnm1.ann1.WI8D6W Arachis hypogaea HOM05D005969 ORTHO05D007407 5.1e-165 584.7 322 90.4
Cfa001877 Carpinus fangiana HOM05D005969 ORTHO05D007407 2.5e-164 582.4 387 77.3
CiPaw.01G255000 Carya illinoinensis HOM05D005969 ORTHO05D007407 1.6e-163 579.7 394 75.4
Potri.001G044000 Populus trichocarpa HOM05D005969 ORTHO05D007407 1.6e-163 579.7 388 74.7
Haze_16671 Corylus avellana HOM05D005969 ORTHO05D007407 2.1e-163 579.3 387 77.3
Sabra01G0030300 Salix brachista HOM05D005969 ORTHO05D007407 1.8e-162 576.2 382 74.6
TAR628G0900 Trochodendron aralioides HOM05D005969 ORTHO05D007407 2.6e-161 572.4 385 75.6
GSVIVG01015969001 Vitis vinifera HOM05D005969 ORTHO05D007407 2.6e-161 572.4 379 77.3
MELO3C023469.2 Cucumis melo HOM05D005969 ORTHO05D007407 3.4e-161 572.0 380 76.6
TWI12G1191 Tripterygium wilfordii HOM05D005969 ORTHO05D007407 3.8e-160 568.5 383 74.9
Nn6g31679 Nelumbo nucifera HOM05D005969 ORTHO05D007407 1.1e-159 567.0 391 74.7
CSS0032429 Camellia sinensis var. sinensis HOM05D005969 ORTHO05D007407 1.9e-159 566.2 391 74.9
ClCG09G003350 Citrullus lanatus HOM05D005969 ORTHO05D007407 4.2e-159 565.1 380 75.8
PGR102G2845 Punica granatum HOM05D005969 ORTHO05D007407 7.1e-159 564.3 380 75.5
Dinv23280 Davidia involucrata HOM05D005969 ORTHO05D007407 1.2e-158 563.5 387 73.9
CsaV3_7G031880 Cucumis sativus L. HOM05D005969 ORTHO05D007407 1.6e-158 563.1 378 76.5
Actinidia18250 Actinidia chinensis HOM05D005969 ORTHO05D007407 6.0e-158 561.2 388 74.5
Nitab4.5_0000886g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 1.0e-157 560.5 386 73.8
Gohir.A05G118900 Gossypium hirsutum HOM05D005969 ORTHO05D007407 1.3e-157 560.1 318 84.6
MD10G1047600 Malus domestica HOM05D005969 ORTHO05D007407 1.7e-157 559.7 391 72.9
Duzib235G1247 Durio zibethinus HOM05D005969 ORTHO05D007407 3.0e-157 558.9 384 74.2
FAN02G2588 Fragaria x ananassa HOM05D005969 ORTHO05D007407 3.0e-157 558.9 353 78.2
CANSAT56G2142 Cannabis sativa HOM05D005969 ORTHO05D007407 8.7e-157 557.4 391 73.4
Gorai.009G123400 Gossypium raimondii HOM05D005969 ORTHO05D007407 1.1e-156 557.0 318 84.3
FvH4_6g28580 Fragaria vesca HOM05D005969 ORTHO05D007407 1.9e-156 556.2 382 73.3
Cc04_g05150 Coffea canephora HOM05D005969 ORTHO05D007407 5.6e-156 554.7 365 76.7
RcHm_v2.0_Chr2g0132911 Rosa chinensis HOM05D005969 ORTHO05D007407 5.6e-156 554.7 370 74.9
COL.COLO4_26714 Corchorus olitorius HOM05D005969 ORTHO05D007407 7.3e-156 554.3 387 72.9
Gohir.D05G119800 Gossypium hirsutum HOM05D005969 ORTHO05D007407 7.3e-156 554.3 318 84.0
Nitab4.5_0008962g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 7.3e-156 554.3 319 83.4
PGSC0003DMG402028489 Solanum tuberosum HOM05D005969 ORTHO05D007407 4.8e-155 551.6 381 71.9
MSTRG.22801 Avicennia marina HOM05D005969 ORTHO05D007407 1.4e-154 550.1 376 73.9
Ciclev10025812m.g Citrus clementina HOM05D005969 ORTHO05D007407 1.4e-154 550.1 317 83.9
SGA_v2.0_scaffold37G14696 Striga asiatica HOM05D005969 ORTHO05D007407 1.8e-154 549.7 329 80.5
CAN.G1932.3 Capsicum annuum HOM05D005969 ORTHO05D007407 9.0e-154 547.4 376 72.3
Sopen06g025730 Solanum pennellii HOM05D005969 ORTHO05D007407 9.0e-154 547.4 382 71.5
Solyc06g068480.3 Solanum lycopersicum HOM05D005969 ORTHO05D007407 4.5e-153 545.0 319 82.1
Aa31LG4G3330 Aethionema arabicum HOM05D005969 ORTHO05D007407 1.3e-152 543.5 350 76.0
ATR0807G102 Amborella trichopoda HOM05D005969 ORTHO05D007407 1.7e-152 543.1 323 80.5
AUR62027000 Chenopodium quinoa HOM05D005969 ORTHO05D007407 1.7e-152 543.1 318 81.8
Eucgr.F03965 Eucalyptus grandis HOM05D005969 ORTHO05D007407 1.7e-152 543.1 320 80.0
Sed0009912 Sechium edule HOM05D005969 ORTHO05D007407 1.7e-152 543.1 376 72.6
Thhalv10018762m.g Eutrema salsugineum HOM05D005969 ORTHO05D007407 2.2e-152 542.7 321 81.3
MBI05_g33301_MAGBIO Magnolia biondii HOM05D005969 ORTHO05D007407 4.9e-152 541.6 390 71.5
THA.LOC104814755 Tarenaya hassleriana HOM05D005969 ORTHO05D007407 4.9e-152 541.6 366 74.0
Hma1.2p1_0109F.1_g052610 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 4.2e-151 538.5 384 71.1
Cpa.g.sc1250.2 Carica papaya HOM05D005969 ORTHO05D007407 7.1e-151 537.7 363 75.5
BraA07t31457Z Brassica rapa HOM05D005969 ORTHO05D007407 9.3e-151 537.3 321 80.4
Migut.I00689 Erythranthe guttata HOM05D005969 ORTHO05D007407 1.6e-150 536.6 389 69.4
Carub.0002s1982 Capsella rubella HOM05D005969 ORTHO05D007407 2.1e-150 536.2 319 80.6
AUR62030840 Chenopodium quinoa HOM05D005969 ORTHO05D007407 2.7e-150 535.8 318 80.8
Sp5g28020 Schrenkiella parvula HOM05D005969 ORTHO05D007407 3.5e-150 535.4 321 80.4
A07p39070 Brassica napus HOM05D005969 ORTHO05D007407 6.0e-150 534.6 318 80.5
C06p47280 Brassica napus HOM05D005969 ORTHO05D007407 6.0e-150 534.6 318 80.5
BolC6t39767H Brassica oleracea HOM05D005969 ORTHO05D007407 6.0e-150 534.6 318 80.5
Atru.chr10.2417 Acer truncatum HOM05D005969 ORTHO05D007407 2.3e-149 532.7 365 74.5
EL10Ac9g22204 Beta vulgaris HOM05D005969 ORTHO05D007407 2.3e-149 532.7 318 80.5
AT1G73060 Arabidopsis thaliana HOM05D005969 ORTHO05D007407 4.3e-148 528.5 319 79.0
HanXRQChr04g0099681 Helianthus annuus HOM05D005969 ORTHO05D007407 4.3e-148 528.5 388 69.8
PSO541G5031 Papaver somniferum HOM05D005969 ORTHO05D007407 5.6e-148 528.1 394 67.8
Lsat_1_v5_gn_1_31041 Lactuca sativa HOM05D005969 ORTHO05D007407 1.6e-147 526.6 321 78.5
Sc12g0005780 Simmondsia chinensis HOM05D005969 ORTHO05D007407 1.6e-147 526.6 381 70.9
Thecc.06G042200 Theobroma cacao HOM05D005969 ORTHO05D007407 1.1e-146 523.9 364 73.9
DCAR_021370 Daucus carota HOM05D005969 ORTHO05D007407 1.4e-146 523.5 353 73.9
AL2G32810 Arabidopsis lyrata HOM05D005969 ORTHO05D007407 2.4e-146 522.7 319 78.4
PSO675G4447 Papaver somniferum HOM05D005969 ORTHO05D007407 2.4e-146 522.7 356 71.9
ECA247G4019 Erigeron canadensis HOM05D005969 ORTHO05D007407 9.0e-146 520.8 316 78.2
CDE06G0123 Ceratophyllum demersum HOM05D005969 ORTHO05D007407 7.6e-145 517.7 353 72.2
Aqoxy5G00978 Aquilegia oxysepala HOM05D005969 ORTHO05D007407 1.0e-144 517.3 324 75.3
Os02g0117100 Oryza sativa ssp. japonica HOM05D005969 ORTHO05D007407 1.0e-144 517.3 316 80.1
Hund06517 Selenicereus undatus HOM05D005969 ORTHO05D007407 8.4e-144 514.2 355 73.2
SalBow7G3052 Salvia bowleyana HOM05D005969 ORTHO05D007407 1.4e-143 513.5 350 70.9
Rhsim08G0203900 Rhododendron simsii HOM05D005969 ORTHO05D007407 2.1e-142 509.6 368 72.3
QL05p035856 Quercus lobata HOM05D005969 ORTHO05D007407 6.7e-141 504.6 276 88.4
HPP92_025491 Vanilla planifolia HOM05D005969 ORTHO05D007407 4.0e-138 495.4 316 75.0
FAN05G1215 Fragaria x ananassa HOM05D005969 ORTHO05D007407 4.2e-135 485.3 318 75.8
unitig_27.g25102 Utricularia gibba HOM05D005969 ORTHO05D002795 1.6e-134 483.4 276 84.4
Peaxi162Scf00207g00440 Petunia axillaris HOM05D005969 ORTHO05D007407 4.3e-132 475.3 374 67.1
Lj9C492T12 Lonicera japonica HOM05D005969 ORTHO05D007407 7.4e-132 474.6 268 85.1
Ah.01g024670 Amaranthus hybridus HOM05D005969 ORTHO05D007407 1.2e-126 457.2 388 63.7
vmacro19064 Vaccinium macrocarpon HOM05D005969 ORTHO05D007407 2.0e-124 449.9 261 83.9
Manes.11G065200 Manihot esculenta HOM05D005969 ORTHO05D007407 9.7e-124 447.6 311 74.3
HanXRQChr14g0426701 Helianthus annuus HOM05D005969 ORTHO05D007407 8.2e-123 444.5 267 78.7
Mapoly0001s0169 Marchantia polymorpha HOM05D005969 ORTHO05D007407 5.5e-119 431.8 361 58.4
Pp3c4_10300 Physcomitrium patens HOM05D005969 ORTHO05D007407 6.1e-118 428.3 318 64.8
HPP92_025442 Vanilla planifolia HOM05D005969 ORTHO05D007407 1.3e-115 420.6 268 74.3
AagrBONN_evm.TU.Sc2ySwM_362.432 Anthoceros agrestis HOM05D005969 ORTHO05D007407 4.1e-114 415.6 319 61.4
arahy.Tifrunner.gnm1.ann1.9VR9ZH Arachis hypogaea HOM05D005969 ORTHO05D007407 2.9e-112 409.5 268 79.1
arahy.Tifrunner.gnm1.ann1.5US335 Arachis hypogaea HOM05D005969 ORTHO05D007407 5.0e-112 408.7 272 77.6
SMO358G0640 Selaginella moellendorffii HOM05D005969 ORTHO05D007407 8.0e-110 401.4 390 53.8
Prupe.3G098800 Prunus persica HOM05D005969 ORTHO05D007407 1.4e-109 400.6 249 78.7
FAN14G2562 Fragaria x ananassa HOM05D005969 ORTHO05D007407 3.2e-103 379.4 287 69.3
HanXRQChr04g0099721 Helianthus annuus HOM05D005969 ORTHO05D007407 2.0e-100 370.2 290 65.5
CARHR066030 Cardamine hirsuta HOM05D005969 ORTHO05D007407 4.5e-97 359.0 257 70.0
arahy.Tifrunner.gnm1.ann1.79PBZ8 Arachis hypogaea HOM05D005969 ORTHO05D007407 5.0e-88 328.9 267 70.8
Ca_20531_v3 Cicer arietinum L. HOM05D005969 ORTHO05D007407 7.2e-87 325.1 241 71.8
arahy.Tifrunner.gnm1.ann1.UJC0YQ Arachis hypogaea HOM05D005969 ORTHO05D007407 9.2e-82 308.1 267 64.4
Cre03.g184550 Chlamydomonas reinhardtii HOM05D005969 ORTHO05D007407 1.3e-75 287.7 311 47.6
MCO01G214 Micromonas commoda HOM05D005969 ORTHO05D007407 1.0e-72 278.1 322 44.1
MCO01G215 Micromonas commoda HOM05D005969 ORTHO05D007407 1.0e-72 278.1 322 44.1
PRCOL_00001281 Prasinoderma coloniale HOM05D005969 ORTHO05D007407 6.2e-70 268.9 340 42.6
Zm00001eb230040 Zea mays HOM05D005969 ORTHO05D007407 3.1e-69 266.5 206 65.5
Sc12g0008350 Simmondsia chinensis HOM05D005969 ORTHO05D007407 9.2e-66 255.0 154 79.2
Ca_20538_v3 Cicer arietinum L. HOM05D005969 ORTHO05D007407 5.6e-63 245.7 130 93.1
Hma1.2p1_0109F.1_g052630 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 4.7e-62 242.7 166 73.5
arahy.Tifrunner.gnm1.ann1.U87P2U Arachis hypogaea HOM05D005442 ORTHO05D006450 5.1e-40 169.5 91 90.1
MCO09G747 Micromonas commoda HOM05D005969 ORTHO05D007407 9.9e-36 155.2 393 31.8
CBR_g50572 Chara braunii HOM05D000019 ORTHO05D000048 9.3e-34 148.7 100 69.0
Sc12g0008300 Simmondsia chinensis HOM05D005969 ORTHO05D007407 2.0e-28 131.0 90 70.0
SEGI_39006 Sequoiadendron giganteum HOM05D005969 ORTHO05D007407 4.5e-28 129.8 75 77.3
HanXRQChr04g0099751 Helianthus annuus HOM05D005969 ORTHO05D007407 2.5e-26 124.0 79 72.2
Glyma.07G022602 Glycine max HOM05D005969 ORTHO05D007407 5.5e-26 122.9 143 55.9
arahy.Tifrunner.gnm1.ann1.4WI1XR Arachis hypogaea HOM05D005969 ORTHO05D007407 1.9e-23 114.4 105 59.0
CBR_g50568 Chara braunii HOM05D000004 ORTHO05D000002 8.2e-22 109.0 77 64.9
QL04p063552 Quercus lobata HOM05D005969 ORTHO05D007407 6.1e-17 92.8 74 66.2
BcaB04g17655 Brassica carinata HOM05D005969 ORTHO05D007407 3.0e-16 90.5 58 72.4
Hma1.2p1_0109F.1_g052620 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 8.7e-16 89.0 54 77.8
TPR.G26782 Trifolium pratense HOM05D009488 ORTHO05D011222 1.9e-15 87.8 110 51.8
SEGI_03763 Sequoiadendron giganteum HOM05D005969 ORTHO05D007407 1.6e-14 84.7 57 68.4
SEGI_15560 Sequoiadendron giganteum HOM05D005969 ORTHO05D007407 1.6e-14 84.7 57 68.4
PGSC0003DMG400019818 Solanum tuberosum HOM05D005969 ORTHO05D007407 1.2e-12 78.6 95 50.5
TPR.G23080 Trifolium pratense HOM05D005969 ORTHO05D007407 1.5e-12 78.2 103 48.5
QL05p035860 Quercus lobata HOM05D005969 ORTHO05D007407 3.4e-12 77.0 117 45.3
Pp3c12_7180 Physcomitrium patens HOM05D001237 ORTHO05D009110 7.7e-12 75.9 295 26.8
HanXRQChr14g0426781 Helianthus annuus HOM05D005969 ORTHO05D007407 1.7e-11 74.7 46 76.1
Psat6g223920 Pisum sativum HOM05D002710 ORTHO05D002905 1.1e-10 72.0 111 45.0
Lj9C492T13 Lonicera japonica HOM05D005969 ORTHO05D007407 1.9e-10 71.2 117 45.3
TPR.G29137 Trifolium pratense HOM05D001237 ORTHO05D009110 1.9e-10 71.2 337 24.3
vmacro22924 Vaccinium macrocarpon HOM05D001237 ORTHO05D009110 7.2e-10 69.3 295 26.8
Phvul.002G132200 Phaseolus vulgaris HOM05D001237 ORTHO05D009110 9.4e-10 68.9 337 25.5
Sopen08g024630 Solanum pennellii HOM05D001237 ORTHO05D009110 1.6e-09 68.2 289 26.3
Psat2g141080 Pisum sativum HOM05D001237 ORTHO05D009110 2.1e-09 67.8 283 25.1
MD00G1000600 Malus domestica HOM05D001237 ORTHO05D009110 3.6e-09 67.0 297 24.6
Mapoly0052s0004 Marchantia polymorpha HOM05D001237 ORTHO05D009110 3.6e-09 67.0 278 25.9
SMO356G0709 Selaginella moellendorffii HOM05D001237 ORTHO05D009110 3.6e-09 67.0 278 26.6
Cc00_g24190 Coffea canephora HOM05D001237 ORTHO05D009110 6.1e-09 66.2 295 25.1
HanXRQChr04g0099771 Helianthus annuus HOM05D005969 ORTHO05D007407 7.9e-09 65.9 42 76.2
Sed0014021 Sechium edule HOM05D001237 ORTHO05D009110 1.0e-08 65.5 297 23.6
Aqoxy3G02614 Aquilegia oxysepala HOM05D001237 ORTHO05D009110 1.4e-08 65.1 299 26.8
Nn3g19221 Nelumbo nucifera HOM05D001237 ORTHO05D009110 1.4e-08 65.1 283 25.4
ATR0829G072 Amborella trichopoda HOM05D001237 ORTHO05D009110 2.3e-08 64.3 310 25.8
AL8G21880 Arabidopsis lyrata HOM05D001237 ORTHO05D009110 3.9e-08 63.5 314 24.2
Manes.17G008800 Manihot esculenta HOM05D001237 ORTHO05D009110 5.1e-08 63.2 285 25.3
Potri.003G182801 Populus trichocarpa HOM05D005969 ORTHO05D007407 5.1e-08 63.2 75 45.3
arahy.Tifrunner.gnm1.ann1.GZLR9S Arachis hypogaea HOM05D005969 ORTHO05D007407 6.7e-08 62.8 80 46.2
AUR62007400 Chenopodium quinoa HOM05D001237 ORTHO05D009110 6.7e-08 62.8 283 25.4
Lj8A324T105 Lonicera japonica HOM05D001237 ORTHO05D009110 8.8e-08 62.4 285 24.9
Cpa.g.sc24.66 Carica papaya HOM05D001237 ORTHO05D009110 1.5e-07 61.6 283 24.4
Potri.003G100300 Populus trichocarpa HOM05D001237 ORTHO05D009110 1.5e-07 61.6 297 25.3
Atru.chr6.1547 Acer truncatum HOM05D001237 ORTHO05D009110 2.5e-07 60.8 285 24.6
Sp2g19180 Schrenkiella parvula HOM05D001237 ORTHO05D009110 2.5e-07 60.8 275 25.1
Thecc.03G315000 Theobroma cacao HOM05D001237 ORTHO05D009110 4.3e-07 60.1 280 23.6
AT5G48790 Arabidopsis thaliana HOM05D001237 ORTHO05D009110 5.7e-07 59.7 281 23.8
AagrBONN_evm.TU.Sc2ySwM_344.3693 Anthoceros agrestis HOM05D001237 ORTHO05D009110 7.4e-07 59.3 267 27.3
Carub.0008s0852 Capsella rubella HOM05D001237 ORTHO05D009110 1.3e-06 58.5 282 25.2
Hma1.2p1_0979F.1_g243590 Hydrangea macrophylla HOM05D001237 ORTHO05D009110 1.7e-06 58.2 308 24.7
TAR629G2165 Trochodendron aralioides HOM05D001237 ORTHO05D009110 2.2e-06 57.8 340 24.1


User provided reference genes

Program Settings