Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G214950 Glycine max HOM05D004263 ORTHO05D004931 1.3e-67 259.6 130 100.0
Glyma.12G201100 Glycine max HOM05D004263 ORTHO05D004931 2.9e-11 72.4 47 83.0
Phvul.005G107700 Phaseolus vulgaris HOM05D004263 ORTHO05D004931 3.8e-11 72.0 47 80.9
Glyma.13G301100 Glycine max HOM05D004263 ORTHO05D004931 6.4e-11 71.2 47 80.9
Dinv23716 Davidia involucrata HOM05D004263 ORTHO05D004931 3.2e-10 68.9 47 78.7
Ca_01536_v3 Cicer arietinum L. HOM05D004263 ORTHO05D004931 5.4e-10 68.2 47 76.6
Psat2g144400 Pisum sativum HOM05D004263 ORTHO05D004931 9.3e-10 67.4 47 76.6
FvH4_6g44560 Fragaria vesca HOM05D004263 ORTHO05D004931 7.8e-09 64.3 61 57.4
FAN02G3638 Fragaria x ananassa HOM05D004263 ORTHO05D004931 7.8e-09 64.3 61 57.4
FAN09G1275 Fragaria x ananassa HOM05D004263 ORTHO05D004931 7.8e-09 64.3 61 57.4
FAN14G1228 Fragaria x ananassa HOM05D004263 ORTHO05D004931 7.8e-09 64.3 61 57.4
Nitab4.5_0000025g0490 Nicotiana tabacum HOM05D004263 ORTHO05D004931 7.8e-09 64.3 61 59.0
Nitab4.5_0001514g0010 Nicotiana tabacum HOM05D004263 ORTHO05D004931 7.8e-09 64.3 61 59.0
RcHm_v2.0_Chr2g0161771 Rosa chinensis HOM05D004263 ORTHO05D004931 7.8e-09 64.3 61 57.4
Lj3g0003932 Lotus japonicus HOM05D004263 ORTHO05D004931 1.0e-08 63.9 45 73.3
CAN.G224.17 Capsicum annuum HOM05D004263 ORTHO05D004931 1.3e-08 63.5 49 69.4
Medtr5g026090 Medicago truncatula HOM05D004263 ORTHO05D004931 1.3e-08 63.5 47 72.3
Medtr8g063380 Medicago truncatula HOM05D004263 ORTHO05D004931 1.3e-08 63.5 47 72.3
Oeu001693.1 Olea europaea HOM05D004263 ORTHO05D004931 1.3e-08 63.5 59 57.6
Oeu001695.1 Olea europaea HOM05D004263 ORTHO05D004931 1.3e-08 63.5 59 57.6
GSVIVG01030005001 Vitis vinifera HOM05D004263 ORTHO05D004931 1.3e-08 63.5 45 73.3
DCAR_009724 Daucus carota HOM05D004263 ORTHO05D004931 1.7e-08 63.2 61 55.7
HanXRQChr07g0200651 Helianthus annuus HOM05D004263 ORTHO05D004931 1.7e-08 63.2 47 72.3
Aqoxy1G01192 Aquilegia oxysepala HOM05D004263 ORTHO05D004931 2.3e-08 62.8 47 70.2
CAN.G2148.2 Capsicum annuum HOM05D004263 ORTHO05D004931 2.3e-08 62.8 61 57.4
Haze_03591 Corylus avellana HOM05D004263 ORTHO05D004931 2.3e-08 62.8 61 57.4
Solyc06g005080.4 Solanum lycopersicum HOM05D004263 ORTHO05D004931 2.3e-08 62.8 61 57.4
Sopen06g001070 Solanum pennellii HOM05D004263 ORTHO05D004931 2.3e-08 62.8 61 57.4
TPR.G26159 Trifolium pratense HOM05D004263 ORTHO05D004931 2.3e-08 62.8 48 68.8
Atru.chr6.3077 Acer truncatum HOM05D004263 ORTHO05D004931 3.0e-08 62.4 47 72.3
Lalb_Chr22g0356351 Lupinus albus HOM05D004263 ORTHO05D004931 3.0e-08 62.4 47 72.3
TWI75G0058 Tripterygium wilfordii HOM05D004263 ORTHO05D004931 3.0e-08 62.4 47 72.3
Cc04_g12270 Coffea canephora HOM05D004263 ORTHO05D004931 3.9e-08 62.0 61 55.7
A08p32810 Brassica napus HOM05D004263 ORTHO05D004931 5.1e-08 61.6 61 52.5
C08p15450 Brassica napus HOM05D004263 ORTHO05D004931 5.1e-08 61.6 61 52.5
BolC8t49173H Brassica oleracea HOM05D004263 ORTHO05D004931 5.1e-08 61.6 61 52.5
BraA08t35204Z Brassica rapa HOM05D004263 ORTHO05D004931 5.1e-08 61.6 61 52.5
SalBow7G3995 Salvia bowleyana HOM05D004263 ORTHO05D004931 5.1e-08 61.6 61 57.4
Ciclev10014147m.g Citrus clementina HOM05D004263 ORTHO05D004931 6.6e-08 61.2 61 55.7
Duzib248G0991 Durio zibethinus HOM05D004263 ORTHO05D004931 6.6e-08 61.2 47 70.2
TAR627G0082 Trochodendron aralioides HOM05D004263 ORTHO05D004931 6.6e-08 61.2 47 70.2
COL.COLO4_13682 Corchorus olitorius HOM05D004263 ORTHO05D004931 8.7e-08 60.8 47 68.1
Lj8C117G6 Lonicera japonica HOM05D004263 ORTHO05D004931 8.7e-08 60.8 47 68.1
PSO801G0468 Papaver somniferum HOM05D004263 ORTHO05D004931 8.7e-08 60.8 61 54.1
Actinidia39296 Actinidia chinensis HOM05D004263 ORTHO05D004931 1.1e-07 60.5 47 70.2
MSTRG.11470 Avicennia marina HOM05D004263 ORTHO05D004931 1.1e-07 60.5 61 57.4
Cfa010655 Carpinus fangiana HOM05D004263 ORTHO05D004931 1.1e-07 60.5 47 70.2
Cfa014543 Carpinus fangiana HOM05D004263 ORTHO05D004931 1.1e-07 60.5 47 70.2
Haze_13086 Corylus avellana HOM05D004263 ORTHO05D004931 1.1e-07 60.5 47 70.2
Gorai.002G017100 Gossypium raimondii HOM05D004263 ORTHO05D004931 1.1e-07 60.5 47 70.2
PSO339G5244 Papaver somniferum HOM05D004263 ORTHO05D004931 1.1e-07 60.5 61 54.1
Prupe.3G231000 Prunus persica HOM05D004263 ORTHO05D004931 1.1e-07 60.5 61 55.7
SGA_v2.0_scaffold90G27889 Striga asiatica HOM05D004263 ORTHO05D004931 1.1e-07 60.5 61 55.7
A06p09160 Brassica napus HOM05D004263 ORTHO05D004931 1.5e-07 60.1 61 52.5
BraA06t24102Z Brassica rapa HOM05D004263 ORTHO05D004931 1.5e-07 60.1 61 52.5
CARHR012770 Cardamine hirsuta HOM05D004263 ORTHO05D004931 1.5e-07 60.1 61 52.5
Thhalv10006686m.g Eutrema salsugineum HOM05D004263 ORTHO05D004931 1.5e-07 60.1 61 52.5
Gohir.A01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 1.5e-07 60.1 47 70.2
Gohir.D01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 1.5e-07 60.1 47 70.2
Hma1.2p1_0565F.1_g179560 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 1.5e-07 60.1 44 70.5
Hma1.2p1_0565F.1_g179570 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 1.5e-07 60.1 44 70.5
Sp1g11070 Schrenkiella parvula HOM05D004263 ORTHO05D004931 1.5e-07 60.1 61 52.5
Aa31LG1G2150 Aethionema arabicum HOM05D004263 ORTHO05D004931 1.9e-07 59.7 61 54.1
Manes.12G082900 Manihot esculenta HOM05D004263 ORTHO05D004931 1.9e-07 59.7 47 63.8
MD17G1084700 Malus domestica HOM05D004263 ORTHO05D004931 2.5e-07 59.3 61 54.1
Thecc.02G171500 Theobroma cacao HOM05D004263 ORTHO05D004931 2.5e-07 59.3 47 66.0
BcaC05g25186 Brassica carinata HOM05D004263 ORTHO05D004931 3.3e-07 58.9 61 52.5
C05p10740 Brassica napus HOM05D004263 ORTHO05D004931 3.3e-07 58.9 61 52.5
BolC5t29815H Brassica oleracea HOM05D004263 ORTHO05D004931 3.3e-07 58.9 61 52.5
ClCG02G001300 Citrullus lanatus HOM05D004263 ORTHO05D004931 3.3e-07 58.9 47 68.1
ECA246G4434 Erigeron canadensis HOM05D004263 ORTHO05D004931 3.3e-07 58.9 47 72.3
Actinidia30490 Actinidia chinensis HOM05D004263 ORTHO05D004931 4.3e-07 58.5 47 68.1
Peaxi162Scf00255g01022 Petunia axillaris HOM05D004263 ORTHO05D004931 4.3e-07 58.5 61 57.4
THA.LOC104809434 Tarenaya hassleriana HOM05D004263 ORTHO05D004931 4.3e-07 58.5 61 54.1
vmacro09293 Vaccinium macrocarpon HOM05D004263 ORTHO05D004931 4.3e-07 58.5 47 68.1
AL1G23830 Arabidopsis lyrata HOM05D004263 ORTHO05D004931 5.6e-07 58.2 61 50.8
arahy.Tifrunner.gnm1.ann1.0PC56D Arachis hypogaea HOM05D004263 ORTHO05D004931 5.6e-07 58.2 47 66.0
arahy.Tifrunner.gnm1.ann1.RA2UAB Arachis hypogaea HOM05D004263 ORTHO05D004931 5.6e-07 58.2 47 66.0
BcaB03g13185 Brassica carinata HOM05D004263 ORTHO05D004931 5.6e-07 58.2 61 50.8
CSS0035062 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 5.6e-07 58.2 49 65.3
Carub.0001s1218 Capsella rubella HOM05D004263 ORTHO05D004931 5.6e-07 58.2 61 50.8
PGR142G2990 Punica granatum HOM05D004263 ORTHO05D004931 5.6e-07 58.2 47 66.0
unitig_0.g1433 Utricularia gibba HOM05D004263 ORTHO05D004931 5.6e-07 58.2 61 55.7
Migut.O00120 Erythranthe guttata HOM05D004263 ORTHO05D004931 7.3e-07 57.8 61 54.1
Nn2g15850 Nelumbo nucifera HOM05D004263 ORTHO05D004931 7.3e-07 57.8 47 63.8
Potri.013G147600 Populus trichocarpa HOM05D004263 ORTHO05D004931 7.3e-07 57.8 47 63.8
EL10As1g23122 Beta vulgaris HOM05D004263 ORTHO05D004931 9.6e-07 57.4 61 54.1
Sabra13G0119200 Salix brachista HOM05D004263 ORTHO05D004931 9.6e-07 57.4 47 63.8
CANSAT64G2398 Cannabis sativa HOM05D004263 ORTHO05D004931 1.3e-06 57.0 61 54.1
CiPaw.03G169700 Carya illinoinensis HOM05D004263 ORTHO05D004931 1.3e-06 57.0 47 66.0
MELO3C018764.2 Cucumis melo HOM05D004263 ORTHO05D004931 1.3e-06 57.0 47 63.8
CsaV3_7G004120 Cucumis sativus L. HOM05D004263 ORTHO05D004931 1.3e-06 57.0 47 63.8
Sed0028127 Sechium edule HOM05D004263 ORTHO05D004931 1.3e-06 57.0 47 66.0
AUR62034472 Chenopodium quinoa HOM05D004263 ORTHO05D004931 1.6e-06 56.6 47 66.0
HPP92_004167 Vanilla planifolia HOM05D004263 ORTHO05D004931 1.6e-06 56.6 53 64.2
Lsat_1_v5_gn_3_39980 Lactuca sativa HOM05D004263 ORTHO05D004931 2.1e-06 56.2 47 68.1
Rhsim04G0063000 Rhododendron simsii HOM05D004263 ORTHO05D004931 2.1e-06 56.2 47 66.0
CSS0035503 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 2.8e-06 55.8 47 63.8
MD14G1065300 Malus domestica HOM05D004263 ORTHO05D004931 2.8e-06 55.8 61 52.5
Lj1C736G5 Lonicera japonica HOM05D004263 ORTHO05D004931 3.6e-06 55.5 82 41.5
QL08p037237 Quercus lobata HOM05D004263 ORTHO05D004931 4.8e-06 55.1 47 63.8
QL08p037295 Quercus lobata HOM05D004263 ORTHO05D004931 4.8e-06 55.1 47 63.8
Ah.11g047230 Amaranthus hybridus HOM05D004263 ORTHO05D004931 6.2e-06 54.7 47 66.0
CSS0002238 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 6.2e-06 54.7 47 63.8
CSS0005038 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 6.2e-06 54.7 47 63.8
Eucgr.K00914 Eucalyptus grandis HOM05D004263 ORTHO05D004931 6.2e-06 54.7 47 66.0


User provided reference genes

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