Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G204400 Glycine max HOM05D005761 ORTHO05D007286 3.0e-87 325.1 160 100.0
Lj3g0012819 Lotus japonicus HOM05D005761 ORTHO05D007286 3.5e-75 285.0 160 87.5
Phvul.010G148400 Phaseolus vulgaris HOM05D005761 ORTHO05D007286 2.3e-74 282.3 155 88.4
VMungo0464G1667 Vigna mungo HOM05D005761 ORTHO05D007286 3.3e-73 278.5 155 87.7
Cc04_g07670 Coffea canephora HOM05D005761 ORTHO05D007286 5.6e-73 277.7 160 81.2
Psat2g181000 Pisum sativum HOM05D005761 ORTHO05D007286 7.3e-73 277.3 165 83.0
arahy.Tifrunner.gnm1.ann1.QAD112 Arachis hypogaea HOM05D005761 ORTHO05D007286 1.2e-72 276.6 160 81.9
arahy.Tifrunner.gnm1.ann1.IDML3X Arachis hypogaea HOM05D005761 ORTHO05D007286 1.6e-72 276.2 160 81.9
Manes.04G130300 Manihot esculenta HOM05D005761 ORTHO05D007286 4.7e-72 274.6 156 83.3
Ca_06670_v3 Cicer arietinum L. HOM05D005761 ORTHO05D007286 6.1e-72 274.2 165 80.0
Ciclev10022630m.g Citrus clementina HOM05D005761 ORTHO05D007286 1.8e-71 272.7 160 81.2
vmacro18882 Vaccinium macrocarpon HOM05D005761 ORTHO05D007286 1.8e-71 272.7 160 80.6
Rhsim08G0224400 Rhododendron simsii HOM05D005761 ORTHO05D007286 8.9e-71 270.4 160 79.4
Dinv38013 Davidia involucrata HOM05D005761 ORTHO05D007286 1.5e-70 269.6 155 81.3
Duzib192G1004 Durio zibethinus HOM05D005761 ORTHO05D007286 2.0e-70 269.2 160 80.6
Eucgr.F03043 Eucalyptus grandis HOM05D005761 ORTHO05D007286 2.6e-70 268.9 160 80.0
Cfa014791 Carpinus fangiana HOM05D005761 ORTHO05D007286 3.4e-70 268.5 156 82.1
Haze_16351 Corylus avellana HOM05D005761 ORTHO05D007286 4.4e-70 268.1 160 80.0
TWI75G0371 Tripterygium wilfordii HOM05D005761 ORTHO05D007286 4.4e-70 268.1 161 81.4
CSS0019454 Camellia sinensis var. sinensis HOM05D005761 ORTHO05D007286 5.8e-70 267.7 160 78.1
CSS0045926 Camellia sinensis var. sinensis HOM05D005761 ORTHO05D007286 5.8e-70 267.7 160 78.1
QL05p021523 Quercus lobata HOM05D005761 ORTHO05D007286 7.5e-70 267.3 159 80.5
Atru.chr5.1303 Acer truncatum HOM05D005761 ORTHO05D007286 1.3e-69 266.5 160 80.0
Atru.chr5.1334 Acer truncatum HOM05D005761 ORTHO05D007286 1.3e-69 266.5 158 81.0
TWI12G1054 Tripterygium wilfordii HOM05D005761 ORTHO05D007286 1.3e-69 266.5 160 78.8
Thecc.06G093100 Theobroma cacao HOM05D005761 ORTHO05D007286 1.7e-69 266.2 160 79.4
Prupe.6G357100 Prunus persica HOM05D005761 ORTHO05D007286 2.9e-69 265.4 160 78.8
CiPaw.01G235200 Carya illinoinensis HOM05D005761 ORTHO05D007286 3.7e-69 265.0 160 80.6
Gohir.D05G131700 Gossypium hirsutum HOM05D005761 ORTHO05D007286 8.3e-69 263.8 158 79.1
Gorai.009G135400 Gossypium raimondii HOM05D005761 ORTHO05D007286 8.3e-69 263.8 158 79.1
Cpa.g.sc33.106 Carica papaya HOM05D005761 ORTHO05D007286 1.1e-68 263.5 153 81.0
EL10Ac9g22057 Beta vulgaris HOM05D005761 ORTHO05D007286 1.9e-68 262.7 155 81.3
Potri.003G052000 Populus trichocarpa HOM05D005761 ORTHO05D007286 1.9e-68 262.7 157 80.3
Gohir.A05G132200 Gossypium hirsutum HOM05D005761 ORTHO05D007286 2.4e-68 262.3 158 78.5
RcHm_v2.0_Chr2g0139151 Rosa chinensis HOM05D005761 ORTHO05D007286 4.1e-68 261.5 160 75.6
Cfa002100 Carpinus fangiana HOM05D005761 ORTHO05D001133 5.4e-68 261.2 156 80.1
Medtr5g011180 Medicago truncatula HOM05D005761 ORTHO05D007286 5.4e-68 261.2 165 78.2
COL.COLO4_30441 Corchorus olitorius HOM05D005761 ORTHO05D007286 7.0e-68 260.8 160 78.8
Lalb_Chr25g0280001 Lupinus albus HOM05D005761 ORTHO05D007286 7.0e-68 260.8 161 80.1
TPR.G19588 Trifolium pratense HOM05D005761 ORTHO05D007286 7.0e-68 260.8 180 71.7
FvH4_6g31840 Fragaria vesca HOM05D005761 ORTHO05D007286 9.2e-68 260.4 157 76.4
FAN14G3194 Fragaria x ananassa HOM05D005761 ORTHO05D007286 9.2e-68 260.4 157 76.4
MD17G1190700 Malus domestica HOM05D005761 ORTHO05D007286 9.2e-68 260.4 160 77.5
FAN09G1691 Fragaria x ananassa HOM05D005761 ORTHO05D007286 1.2e-67 260.0 156 76.3
GSVIVG01017058001 Vitis vinifera HOM05D005761 ORTHO05D007286 1.2e-67 260.0 161 75.8
Hma1.2p1_1195F.1_g265890 Hydrangea macrophylla HOM05D005761 ORTHO05D007286 2.0e-67 259.2 160 76.9
Gorai.011G073900 Gossypium raimondii HOM05D005761 ORTHO05D007286 2.7e-67 258.8 160 78.1
Lj5A57G74 Lonicera japonica HOM05D005761 ORTHO05D007286 2.7e-67 258.8 159 77.4
Gohir.A10G081800 Gossypium hirsutum HOM05D005761 ORTHO05D007286 3.5e-67 258.5 160 77.5
Gohir.D10G069650 Gossypium hirsutum HOM05D005761 ORTHO05D007286 3.5e-67 258.5 160 78.1
Lj9C509G5 Lonicera japonica HOM05D003521 ORTHO05D000476 4.6e-67 258.1 162 77.2
Sabra01G0154700 Salix brachista HOM05D005761 ORTHO05D007286 6.0e-67 257.7 159 78.0
Sc12g0009490 Simmondsia chinensis HOM05D005761 ORTHO05D007286 7.8e-67 257.3 155 78.7
CAN.G438.30 Capsicum annuum HOM05D005761 ORTHO05D007286 1.0e-66 256.9 160 76.2
DCAR_016208 Daucus carota HOM05D005761 ORTHO05D007286 1.0e-66 256.9 160 75.6
CsaV3_3G005910 Cucumis sativus L. HOM05D005761 ORTHO05D007286 1.3e-66 256.5 161 75.8
MELO3C016564.2 Cucumis melo HOM05D005761 ORTHO05D007286 1.7e-66 256.1 158 77.2
Cpa.g.sc37.42 Carica papaya HOM05D005761 ORTHO05D007286 2.3e-66 255.8 162 78.4
Lsat_1_v5_gn_4_103261 Lactuca sativa HOM05D005761 ORTHO05D007286 2.3e-66 255.8 160 75.0
FAN05G4602 Fragaria x ananassa HOM05D005761 ORTHO05D007286 3.0e-66 255.4 156 75.0
HanXRQChr09g0275451 Helianthus annuus HOM05D005761 ORTHO05D007286 3.0e-66 255.4 158 75.9
PGR102G2101 Punica granatum HOM05D005761 ORTHO05D007286 3.0e-66 255.4 163 76.7
Sed0000486 Sechium edule HOM05D005761 ORTHO05D007286 3.0e-66 255.4 160 76.9
PGSC0003DMG401002548 Solanum tuberosum HOM05D005761 ORTHO05D007286 5.0e-66 254.6 160 77.5
Nn2g11672 Nelumbo nucifera HOM05D005761 ORTHO05D007286 1.5e-65 253.1 153 79.1
PSO063G2446 Papaver somniferum HOM05D005761 ORTHO05D007286 1.5e-65 253.1 153 78.4
Solyc03g120610.3 Solanum lycopersicum HOM05D005761 ORTHO05D007286 1.5e-65 253.1 160 76.2
Sopen00g008190 Solanum pennellii HOM05D005761 ORTHO05D007286 1.5e-65 253.1 160 76.2
SGA_v2.0_scaffold80G25854 Striga asiatica HOM05D005761 ORTHO05D007286 1.9e-65 252.7 160 77.5
DCAR_023065 Daucus carota HOM05D005761 ORTHO05D007286 4.3e-65 251.5 161 73.9
Nn3g18106 Nelumbo nucifera HOM05D005761 ORTHO05D007286 4.3e-65 251.5 154 79.2
ClCG09G001920 Citrullus lanatus HOM05D005761 ORTHO05D007286 5.6e-65 251.1 154 77.3
PSO170G4248 Papaver somniferum HOM05D005761 ORTHO05D007286 5.6e-65 251.1 153 77.1
PGR102G0188 Punica granatum HOM05D005761 ORTHO05D007286 7.3e-65 250.8 163 76.1
unitig_37.g12255 Utricularia gibba HOM05D005761 ORTHO05D007286 1.2e-64 250.0 155 74.8
SGA_v2.0_scaffold5G02550 Striga asiatica HOM05D005761 ORTHO05D007286 1.6e-64 249.6 160 76.2
Oeu000460.1 Olea europaea HOM05D005761 ORTHO05D007286 2.1e-64 249.2 157 74.5
Ah.01g005570 Amaranthus hybridus HOM05D005761 ORTHO05D001133 2.8e-64 248.8 180 70.6
CDE05G3104 Ceratophyllum demersum HOM05D005761 ORTHO05D007286 6.2e-64 247.7 148 79.7
Nitab4.5_0001315g0120 Nicotiana tabacum HOM05D005761 ORTHO05D007286 8.0e-64 247.3 159 76.1
THA.LOC104813554 Tarenaya hassleriana HOM05D005761 ORTHO05D007286 1.1e-63 246.9 157 73.9
AUR62016504 Chenopodium quinoa HOM05D005761 ORTHO05D007286 3.1e-63 245.4 164 76.2
Nitab4.5_0007217g0020 Nicotiana tabacum HOM05D005761 ORTHO05D007286 4.0e-63 245.0 141 81.6
MSTRG.22659 Avicennia marina HOM05D005761 ORTHO05D007286 6.8e-63 244.2 155 76.1
Rhsim09G0202300 Rhododendron simsii HOM05D005761 ORTHO05D007286 6.8e-63 244.2 160 73.1
Migut.I00937 Erythranthe guttata HOM05D005761 ORTHO05D007286 1.2e-62 243.4 157 72.0
MBI01_g30861_MAGBIO Magnolia biondii HOM05D005761 ORTHO05D007286 1.5e-62 243.0 142 80.3
Nitab4.5_0006311g0030 Nicotiana tabacum HOM05D005761 ORTHO05D007286 2.6e-62 242.3 160 74.4
ClCG10G006430 Citrullus lanatus HOM05D005761 ORTHO05D007286 4.4e-62 241.5 141 80.1
RcHm_v2.0_Chr2g0139101 Rosa chinensis HOM05D005761 ORTHO05D007286 5.8e-62 241.1 160 72.5
Oeu059462.1 Olea europaea HOM05D005761 ORTHO05D007286 7.5e-62 240.7 179 67.0
Peaxi162Scf00015g00136 Petunia axillaris HOM05D005761 ORTHO05D007286 1.3e-61 240.0 157 74.5
TAR624G1072 Trochodendron aralioides HOM05D005761 ORTHO05D007286 1.3e-61 240.0 153 76.5
ECA232G2351 Erigeron canadensis HOM05D005761 ORTHO05D007286 2.2e-61 239.2 158 69.6
Zm00001eb237310 Zea mays HOM05D005761 ORTHO05D007286 2.2e-61 239.2 153 73.9
HPP92_024576 Vanilla planifolia HOM05D005761 ORTHO05D007286 3.2e-60 235.3 151 74.8
Os02g0275100 Oryza sativa ssp. japonica HOM05D005761 ORTHO05D007286 4.1e-60 235.0 141 78.0
Aa31LG5G21060 Aethionema arabicum HOM05D000113 ORTHO05D001108 9.2e-60 233.8 161 71.4
Sp1g13540 Schrenkiella parvula HOM05D005761 ORTHO05D007286 1.6e-59 233.0 162 72.2
ATR0315G131 Amborella trichopoda HOM05D005761 ORTHO05D007286 6.0e-59 231.1 138 76.1
Carub.0001s1498 Capsella rubella HOM05D005761 ORTHO05D007286 1.0e-58 230.3 162 71.6
BcaB03g13070 Brassica carinata HOM05D005761 ORTHO05D007286 1.3e-58 229.9 162 70.4
Thhalv10008971m.g Eutrema salsugineum HOM05D005761 ORTHO05D007286 1.3e-58 229.9 160 70.0
Peaxi162Scf00029g02413 Petunia axillaris HOM05D005761 ORTHO05D007286 6.6e-58 227.6 160 71.2
CARHR015750 Cardamine hirsuta HOM05D005761 ORTHO05D007286 1.9e-57 226.1 160 70.0
AL1G27310 Arabidopsis lyrata HOM05D005761 ORTHO05D007286 1.6e-56 223.0 162 69.8
A06p11220 Brassica napus HOM05D005761 ORTHO05D007286 2.1e-56 222.6 159 70.4
BraA06t24302Z Brassica rapa HOM05D005761 ORTHO05D007286 2.1e-56 222.6 159 70.4
A08p31680 Brassica napus HOM05D005761 ORTHO05D007286 8.1e-56 220.7 162 69.1
BraA08t35090Z Brassica rapa HOM05D005761 ORTHO05D007286 8.1e-56 220.7 162 69.1
BcaC07g38774 Brassica carinata HOM05D005761 ORTHO05D007286 1.8e-55 219.5 146 71.9
BolC8t49332H Brassica oleracea HOM05D005761 ORTHO05D007286 3.1e-55 218.8 162 67.9
C05p13350 Brassica napus HOM05D005761 ORTHO05D007286 4.0e-55 218.4 141 74.5
C08p17060 Brassica napus HOM05D000103 ORTHO05D000049 4.0e-55 218.4 161 67.7
AT1G15220 Arabidopsis thaliana HOM05D005761 ORTHO05D007286 8.9e-55 217.2 162 68.5
BolC5t30072H Brassica oleracea HOM05D005761 ORTHO05D007286 8.9e-55 217.2 141 73.8
SalBow2G2609 Salvia bowleyana HOM05D005761 ORTHO05D007286 2.2e-53 212.6 198 55.6
CANSAT56G0921 Cannabis sativa HOM05D005761 ORTHO05D007286 4.1e-52 208.4 157 63.1
TAR636G0897 Trochodendron aralioides HOM05D005761 ORTHO05D007286 1.0e-50 203.8 132 73.5
Duzib160G0104 Durio zibethinus HOM05D005761 ORTHO05D007286 5.6e-49 198.0 156 66.7
Actinidia32723 Actinidia chinensis HOM05D005761 ORTHO05D007286 1.1e-47 193.7 127 71.7
Cfa014792 Carpinus fangiana HOM05D005761 ORTHO05D007286 1.5e-46 189.9 113 77.0
SHI11001 Sapria himalayana HOM05D005761 ORTHO05D007286 5.8e-46 188.0 154 59.7
Glyma.07G019200 Glycine max HOM05D005761 ORTHO05D007286 1.4e-44 183.3 93 98.9
SEGI_40479 Sequoiadendron giganteum HOM05D005761 ORTHO05D007286 5.6e-41 171.4 130 57.7
BcaC05g25451 Brassica carinata HOM05D005761 ORTHO05D007286 2.4e-39 166.0 122 68.9
Mapoly0033s0089 Marchantia polymorpha HOM05D005761 ORTHO05D007286 3.5e-35 152.1 144 50.7
Pp3c3_29950 Physcomitrium patens HOM05D005761 ORTHO05D007286 3.5e-35 152.1 154 50.6
HanXRQChr05g0136521 Helianthus annuus HOM05D005761 ORTHO05D007286 1.5e-33 146.7 93 75.3
Sed0020064 Sechium edule HOM05D005761 ORTHO05D007286 1.3e-32 143.7 98 71.4
HanXRQChr10g0301331 Helianthus annuus HOM05D005761 ORTHO05D007286 6.9e-31 137.9 87 78.2
CBR_g32010 Chara braunii HOM05D005761 ORTHO05D007286 4.9e-29 131.7 140 48.6
Sopen03g039470 Solanum pennellii HOM05D005761 ORTHO05D007286 3.9e-26 122.1 78 71.8
HanXRQChr11g0333491 Helianthus annuus HOM05D005761 ORTHO05D007286 1.2e-22 110.5 124 47.6
HanXRQChr08g0232791 Helianthus annuus HOM05D005761 ORTHO05D007286 1.7e-21 106.7 124 46.8
Rhsim08G0224100 Rhododendron simsii HOM05D000414 ORTHO05D000276 1.0e-13 80.9 50 78.0
Rhsim08G0203300 Rhododendron simsii HOM05D005761 ORTHO05D007286 1.1e-12 77.4 48 72.9


User provided reference genes

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