Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G193350 Glycine max HOM05D005903 ORTHO05D007293 2.6e-46 188.3 92 100.0
Glyma.05G134300 Glycine max HOM05D005903 ORTHO05D007293 3.0e-23 111.7 60 95.0
VMungo0251G1440 Vigna mungo HOM05D005903 ORTHO05D007293 1.2e-22 109.8 60 91.7
Phvul.002G188100 Phaseolus vulgaris HOM05D005903 ORTHO05D007293 2.0e-22 109.0 60 91.7
Glyma.08G089000 Glycine max HOM05D005903 ORTHO05D007293 2.6e-22 108.6 60 91.7
Lalb_Chr07g0188231 Lupinus albus HOM05D005903 ORTHO05D007293 4.4e-22 107.8 60 88.3
arahy.Tifrunner.gnm1.ann1.7A7AL1 Arachis hypogaea HOM05D005903 ORTHO05D007293 4.1e-20 101.3 60 81.7
Lj4g0014401 Lotus japonicus HOM05D005903 ORTHO05D007293 9.1e-20 100.1 60 80.0
Ca_18231_v3 Cicer arietinum L. HOM05D005903 ORTHO05D007293 2.0e-19 99.0 60 80.0
Potri.001G076200 Populus trichocarpa HOM05D005903 ORTHO05D007293 3.5e-19 98.2 60 78.3
Sabra01G0053000 Salix brachista HOM05D005903 ORTHO05D007293 3.5e-19 98.2 60 78.3
Sp1g31680 Schrenkiella parvula HOM05D005903 ORTHO05D007293 3.5e-19 98.2 60 75.0
BcaC07g40489 Brassica carinata HOM05D005903 ORTHO05D007293 7.7e-19 97.1 60 76.7
A06p19990 Brassica napus HOM05D005903 ORTHO05D007293 7.7e-19 97.1 60 76.7
C08p34580 Brassica napus HOM05D005903 ORTHO05D007293 7.7e-19 97.1 60 76.7
BolC8t51059H Brassica oleracea HOM05D005903 ORTHO05D007293 7.7e-19 97.1 60 76.7
BraA06t25085Z Brassica rapa HOM05D005903 ORTHO05D007293 7.7e-19 97.1 60 76.7
Lj1C1150G3 Lonicera japonica HOM05D005903 ORTHO05D007293 1.0e-18 96.7 60 76.7
Sopen02g026460 Solanum pennellii HOM05D005903 ORTHO05D007293 1.0e-18 96.7 60 76.7
Cpa.g.sc30.99 Carica papaya HOM05D005903 ORTHO05D007293 1.3e-18 96.3 60 75.0
Solyc02g081840.4 Solanum lycopersicum HOM05D005903 ORTHO05D007293 1.3e-18 96.3 60 76.7
BcaB01g00896 Brassica carinata HOM05D005903 ORTHO05D007293 1.7e-18 95.9 60 75.0
BcaC01g01793 Brassica carinata HOM05D005903 ORTHO05D007293 1.7e-18 95.9 60 75.0
C03p71840 Brassica napus HOM05D005903 ORTHO05D007293 1.7e-18 95.9 60 75.0
BolC3t19474H Brassica oleracea HOM05D005903 ORTHO05D007293 1.7e-18 95.9 60 75.0
BraA09t40620Z Brassica rapa HOM05D005903 ORTHO05D007293 1.7e-18 95.9 60 75.0
Psat7g087640 Pisum sativum HOM05D005903 ORTHO05D007293 1.7e-18 95.9 59 78.0
Atru.chr10.296 Acer truncatum HOM05D005903 ORTHO05D007293 2.2e-18 95.5 60 76.7
Peaxi162Scf00036g02217 Petunia axillaris HOM05D005903 ORTHO05D007293 2.2e-18 95.5 63 73.0
PGSC0003DMG400007316 Solanum tuberosum HOM05D005903 ORTHO05D007293 2.2e-18 95.5 60 75.0
AL5G26920 Arabidopsis lyrata HOM05D005903 ORTHO05D007293 2.9e-18 95.1 60 75.0
Gohir.D11G050975 Gossypium hirsutum HOM05D005903 ORTHO05D007293 2.9e-18 95.1 63 71.4
AT3G47630 Arabidopsis thaliana HOM05D005903 ORTHO05D007293 3.8e-18 94.7 60 73.3
A09p51850 Brassica napus HOM05D005903 ORTHO05D007293 3.8e-18 94.7 60 73.3
Thhalv10011094m.g Eutrema salsugineum HOM05D005903 ORTHO05D007293 3.8e-18 94.7 60 73.3
FvH4_3g13050 Fragaria vesca HOM05D005903 ORTHO05D007293 3.8e-18 94.7 59 76.3
FAN11G1857 Fragaria x ananassa HOM05D005903 ORTHO05D007293 3.8e-18 94.7 59 76.3
Manes.03G070940 Manihot esculenta HOM05D005903 ORTHO05D007293 3.8e-18 94.7 60 73.3
Prupe.4G118500 Prunus persica HOM05D005903 ORTHO05D007293 3.8e-18 94.7 60 73.3
Haze_05254 Corylus avellana HOM05D005903 ORTHO05D007293 5.0e-18 94.4 60 75.0
TPR.G23817 Trifolium pratense HOM05D005903 ORTHO05D007293 5.0e-18 94.4 59 78.0
COL.COLO4_05791 Corchorus olitorius HOM05D005903 ORTHO05D007293 6.5e-18 94.0 60 73.3
Hma1.2p1_0088F.1_g045273 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 6.5e-18 94.0 62 72.6
Nn7g38356 Nelumbo nucifera HOM05D005903 ORTHO05D007293 6.5e-18 94.0 60 71.7
FAN25G2454 Fragaria x ananassa HOM05D005903 ORTHO05D007293 8.5e-18 93.6 59 74.6
Medtr4g094760 Medicago truncatula HOM05D005903 ORTHO05D007293 8.5e-18 93.6 59 74.6
Nitab4.5_0000844g0290 Nicotiana tabacum HOM05D005903 ORTHO05D007293 8.5e-18 93.6 60 75.0
Nitab4.5_0010610g0030 Nicotiana tabacum HOM05D005903 ORTHO05D007293 8.5e-18 93.6 60 75.0
Prupe.7G025500 Prunus persica HOM05D005903 ORTHO05D007293 8.5e-18 93.6 60 71.7
THA.LOC104824626 Tarenaya hassleriana HOM05D005903 ORTHO05D007293 8.5e-18 93.6 60 73.3
Carub.0005s1376 Capsella rubella HOM05D005903 ORTHO05D007293 1.1e-17 93.2 60 71.7
FAN21G0687 Fragaria x ananassa HOM05D005903 ORTHO05D007293 1.1e-17 93.2 59 72.9
TAR624G0428 Trochodendron aralioides HOM05D005903 ORTHO05D007293 1.1e-17 93.2 59 74.6
ATR0605G282 Amborella trichopoda HOM05D005903 ORTHO05D007293 1.5e-17 92.8 60 75.0
Dinv01020 Davidia involucrata HOM05D005903 ORTHO05D007293 1.5e-17 92.8 60 71.7
Dinv07001 Davidia involucrata HOM05D005903 ORTHO05D007293 1.5e-17 92.8 60 71.7
Gohir.D11G050900 Gossypium hirsutum HOM05D005903 ORTHO05D007293 1.5e-17 92.8 60 73.3
PGR044G2521 Punica granatum HOM05D005903 ORTHO05D007293 1.5e-17 92.8 60 73.3
Aa31LG9G16250 Aethionema arabicum HOM05D005903 ORTHO05D007293 1.9e-17 92.4 60 71.7
CiPaw.09G138500 Carya illinoinensis HOM05D005903 ORTHO05D007293 1.9e-17 92.4 60 70.0
Eucgr.A00192 Eucalyptus grandis HOM05D005903 ORTHO05D007293 1.9e-17 92.4 60 73.3
Hma1.2p1_0088F.1_g045276 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 1.9e-17 92.4 60 73.3
THA.LOC104812245 Tarenaya hassleriana HOM05D005903 ORTHO05D007293 1.9e-17 92.4 60 71.7
FAN16G3015 Fragaria x ananassa HOM05D005903 ORTHO05D007293 2.5e-17 92.0 59 72.9
ClCG01G025750 Citrullus lanatus HOM05D005903 ORTHO05D007293 3.2e-17 91.7 60 75.0
Gohir.A11G047300 Gossypium hirsutum HOM05D005903 ORTHO05D007293 3.2e-17 91.7 60 71.7
QL11p012010 Quercus lobata HOM05D005903 ORTHO05D007293 3.2e-17 91.7 59 72.9
Thecc.02G003100 Theobroma cacao HOM05D005903 ORTHO05D007293 3.2e-17 91.7 60 71.7
CAN.G809.52 Capsicum annuum HOM05D005903 ORTHO05D007293 5.5e-17 90.9 60 71.7
CsaV3_6G052990 Cucumis sativus L. HOM05D005903 ORTHO05D007293 5.5e-17 90.9 60 73.3
ECA247G0018 Erigeron canadensis HOM05D005903 ORTHO05D007293 5.5e-17 90.9 59 74.6
Gorai.007G055300 Gossypium raimondii HOM05D005903 ORTHO05D007293 5.5e-17 90.9 60 71.7
Hma1.2p1_1011F.1_g247520 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 5.5e-17 90.9 62 69.4
RcHm_v2.0_Chr5g0021241 Rosa chinensis HOM05D005903 ORTHO05D007293 5.5e-17 90.9 59 72.9
CARHR156310 Cardamine hirsuta HOM05D005903 ORTHO05D007293 7.2e-17 90.5 60 70.0
Ciclev10016117m.g Citrus clementina HOM05D005903 ORTHO05D007293 7.2e-17 90.5 59 72.9
MD05G1245400 Malus domestica HOM05D005903 ORTHO05D007293 7.2e-17 90.5 59 71.2
CANSAT35G1866 Cannabis sativa HOM05D005903 ORTHO05D007293 9.5e-17 90.1 60 73.3
AUR62032162 Chenopodium quinoa HOM05D005903 ORTHO05D007293 9.5e-17 90.1 60 71.7
Migut.M02015 Erythranthe guttata HOM05D005903 ORTHO05D007293 9.5e-17 90.1 59 69.5
HanXRQChr12g0369311 Helianthus annuus HOM05D005903 ORTHO05D007293 9.5e-17 90.1 59 72.9
Cc09_g05110 Coffea canephora HOM05D005903 ORTHO05D007293 1.2e-16 89.7 60 70.0
Haze_05249 Corylus avellana HOM05D005903 ORTHO05D007293 1.2e-16 89.7 59 72.9
AUR62036920 Chenopodium quinoa HOM05D005903 ORTHO05D007293 1.6e-16 89.4 60 70.0
MELO3C007010.2 Cucumis melo HOM05D005903 ORTHO05D007293 1.6e-16 89.4 60 71.7
Sed0025041 Sechium edule HOM05D005903 ORTHO05D007293 2.1e-16 89.0 60 71.7
Dinv26323 Davidia involucrata HOM05D005903 ORTHO05D007293 2.8e-16 88.6 59 71.2
Migut.G01043 Erythranthe guttata HOM05D005903 ORTHO05D007293 2.8e-16 88.6 59 67.8
CSS0034787 Camellia sinensis var. sinensis HOM05D005903 ORTHO05D007293 3.6e-16 88.2 60 71.7
Os11g0549650 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 3.6e-16 88.2 60 65.0
Hund09980 Selenicereus undatus HOM05D005903 ORTHO05D007293 3.6e-16 88.2 60 70.0
GSVIVG01012154001 Vitis vinifera HOM05D005903 ORTHO05D007293 4.7e-16 87.8 59 67.8
Cc00_g27340 Coffea canephora HOM05D005903 ORTHO05D007293 6.1e-16 87.4 57 71.9
Rhsim13G0219000 Rhododendron simsii HOM05D005903 ORTHO05D007293 6.1e-16 87.4 59 69.5
Lsat_1_v5_gn_1_24420 Lactuca sativa HOM05D005903 ORTHO05D007293 8.0e-16 87.0 59 71.2
Zm00001eb201720 Zea mays HOM05D005903 ORTHO05D007293 8.0e-16 87.0 60 65.0
CDE06G1059 Ceratophyllum demersum HOM05D005903 ORTHO05D007293 1.8e-15 85.9 59 67.8
DCAR_003756 Daucus carota HOM05D005903 ORTHO05D007293 2.3e-15 85.5 59 67.8
PSO675G2427 Papaver somniferum HOM05D005903 ORTHO05D007293 2.3e-15 85.5 60 66.7
vmacro03560 Vaccinium macrocarpon HOM05D005903 ORTHO05D007293 2.3e-15 85.5 59 67.8
EL10Ac5g11217 Beta vulgaris HOM05D005903 ORTHO05D007293 1.2e-14 83.2 60 63.3
SGA_v2.0_scaffold31G12765 Striga asiatica HOM05D005903 ORTHO05D007293 1.5e-14 82.8 60 63.3
AagrBONN_evm.TU.Sc2ySwM_344.2832 Anthoceros agrestis HOM05D005903 ORTHO05D007293 2.0e-14 82.4 59 67.8
HPP92_021274 Vanilla planifolia HOM05D005903 ORTHO05D007293 2.6e-14 82.0 60 65.0
Rhsim05G0003000 Rhododendron simsii HOM05D005903 ORTHO05D007293 4.4e-14 81.3 59 64.4
Aqoxy7G00859 Aquilegia oxysepala HOM05D005903 ORTHO05D007293 7.5e-14 80.5 60 65.0
Duzib052G0373 Durio zibethinus HOM05D005903 ORTHO05D007293 7.5e-14 80.5 82 53.7
Rhsim07G0106900 Rhododendron simsii HOM05D005903 ORTHO05D007293 7.5e-14 80.5 59 66.1
SEGI_28167 Sequoiadendron giganteum HOM05D005903 ORTHO05D007293 1.4e-12 76.3 60 58.3
Pp3c7_4190 Physcomitrium patens HOM05D005903 ORTHO05D007293 1.6e-11 72.8 59 57.6
SMO367G0859 Selaginella moellendorffii HOM05D005903 ORTHO05D007293 3.5e-11 71.6 59 57.6
Mapoly0019s0171 Marchantia polymorpha HOM05D005903 ORTHO05D007293 9.5e-09 63.5 59 52.5
Migut.O00470 Erythranthe guttata HOM05D005903 ORTHO05D007293 2.3e-07 58.9 59 49.2
arahy.Tifrunner.gnm1.ann1.STP4KF Arachis hypogaea HOM05D005903 ORTHO05D007293 6.8e-07 57.4 35 80.0
MCO11G061 Micromonas commoda HOM05D005903 ORTHO05D007293 1.5e-06 56.2 53 52.8
CBR_g23454 Chara braunii HOM05D001496 ORTHO05D007453 5.7e-06 54.3 60 43.3


User provided reference genes

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