Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G186200 Glycine max HOM05D003347 ORTHO05D003821 1.2e-54 217.6 280 100.0
Lj6g0014149 Lotus japonicus HOM05D003347 ORTHO05D003821 4.0e-42 176.0 284 71.8
Glyma.15G046600 Glycine max HOM05D003347 ORTHO05D003821 7.5e-41 171.8 280 87.1
arahy.Tifrunner.gnm1.ann1.N22SFW Arachis hypogaea HOM05D003347 ORTHO05D003821 2.7e-38 163.3 280 75.0
VMungo0540G0141 Vigna mungo HOM05D003347 ORTHO05D003821 1.1e-36 157.9 280 73.6
TWI14G1287 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 3.1e-34 149.8 282 65.2
Duzib132G0710 Durio zibethinus HOM05D003347 ORTHO05D003821 1.9e-31 140.6 283 73.1
TAR381G0729 Trochodendron aralioides HOM05D003347 ORTHO05D003821 3.2e-31 139.8 281 68.3
TAR628G0882 Trochodendron aralioides HOM05D003347 ORTHO05D003821 9.2e-31 138.3 280 68.6
Gohir.A04G127400 Gossypium hirsutum HOM05D003347 ORTHO05D003821 4.6e-30 136.0 283 67.8
Gorai.008G042400 Gossypium raimondii HOM05D003347 ORTHO05D003821 4.6e-30 136.0 283 65.7
Duzib248G0125 Durio zibethinus HOM05D003347 ORTHO05D003821 1.3e-29 134.4 283 77.4
Thecc.02G038200 Theobroma cacao HOM05D003347 ORTHO05D003821 6.6e-29 132.1 283 67.5
Medtr2g007150 Medicago truncatula HOM05D003347 ORTHO05D003821 5.6e-28 129.0 280 74.3
Gohir.D04G172100 Gossypium hirsutum HOM05D003347 ORTHO05D003821 1.2e-27 127.9 283 68.6
GSVIVG01022926001 Vitis vinifera HOM05D003347 ORTHO05D003821 2.1e-27 127.1 281 72.6
TAR376G0009 Trochodendron aralioides HOM05D003347 ORTHO05D003821 4.7e-27 125.9 281 56.2
Sed0005094 Sechium edule HOM05D003347 ORTHO05D003821 3.1e-26 123.2 281 69.0
Gohir.A12G031700 Gossypium hirsutum HOM05D003347 ORTHO05D003821 4.0e-26 122.9 283 69.6
Phvul.006G214600 Phaseolus vulgaris HOM05D003347 ORTHO05D003821 7.6e-25 118.6 241 74.3
Psat1g221480 Pisum sativum HOM05D003347 ORTHO05D003821 9.9e-25 118.2 306 56.9
TPR.G2109 Trifolium pratense HOM05D003347 ORTHO05D003821 2.2e-24 117.1 280 72.9
Lalb_Chr18g0060901 Lupinus albus HOM05D003347 ORTHO05D003821 1.6e-22 110.9 282 68.4
ATR0684G168 Amborella trichopoda HOM05D003347 ORTHO05D003821 2.7e-22 110.2 274 67.9
Gorai.012G161200 Gossypium raimondii HOM05D003347 ORTHO05D003821 3.5e-22 109.8 304 60.2
Potri.001G211000 Populus trichocarpa HOM05D003347 ORTHO05D003821 4.6e-22 109.4 283 75.6
CsaV3_6G037360 Cucumis sativus L. HOM05D003347 ORTHO05D003821 1.3e-21 107.8 280 60.7
MELO3C014381.2 Cucumis melo HOM05D003347 ORTHO05D003821 2.3e-21 107.1 280 60.7
Hma1.2p1_0217F.1_g092040 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 3.9e-21 106.3 281 65.1
CANSAT11G2200 Cannabis sativa HOM05D003347 ORTHO05D003821 5.6e-20 102.4 282 64.9
CSS0030084 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 2.1e-19 100.5 170 59.4
AUR62014268 Chenopodium quinoa HOM05D003347 ORTHO05D003821 6.2e-19 99.0 280 64.3
PGR042G0677 Punica granatum HOM05D003347 ORTHO05D003821 1.8e-18 97.4 282 64.2
Haze_01671 Corylus avellana HOM05D003347 ORTHO05D003821 8.9e-18 95.1 196 71.9
Hund07201 Selenicereus undatus HOM05D003347 ORTHO05D003821 8.9e-18 95.1 164 61.0
Sc03g0004210 Simmondsia chinensis HOM05D003347 ORTHO05D003821 1.2e-17 94.7 280 60.4
PSO063G2612 Papaver somniferum HOM05D003347 ORTHO05D003821 1.5e-17 94.4 282 53.9
MBI03_g33029_MAGBIO Magnolia biondii HOM05D003347 ORTHO05D003821 7.6e-17 92.0 281 59.4
THA.LOC104823661 Tarenaya hassleriana HOM05D003347 ORTHO05D003821 7.6e-17 92.0 277 61.4
CDE06G2684 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 2.2e-16 90.5 280 56.4
Prupe.1G568600 Prunus persica HOM05D003347 ORTHO05D003821 2.9e-16 90.1 304 61.2
arahy.Tifrunner.gnm1.ann1.CXB9HG Arachis hypogaea HOM05D003347 ORTHO05D003821 3.8e-16 89.7 196 72.4
CSS0039803 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 3.2e-15 86.7 169 55.6
TWI31G0129 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 7.1e-15 85.5 182 50.0
Aqoxy6G00189 Aquilegia oxysepala HOM05D003347 ORTHO05D003821 9.3e-15 85.1 197 68.0
CiPaw.05G044400 Carya illinoinensis HOM05D003347 ORTHO05D003821 1.6e-14 84.3 281 54.4
THA.LOC104819278 Tarenaya hassleriana HOM05D003347 ORTHO05D003821 4.6e-14 82.8 286 57.0
Cfa005522 Carpinus fangiana HOM05D003347 ORTHO05D003821 2.3e-13 80.5 197 69.0
Manes.07G015700 Manihot esculenta HOM05D003347 ORTHO05D003821 2.3e-13 80.5 198 66.7
Atru.chr6.636 Acer truncatum HOM05D003347 ORTHO05D003821 3.0e-13 80.1 283 55.8
Gohir.D12G040600 Gossypium hirsutum HOM05D003347 ORTHO05D003821 3.0e-13 80.1 197 66.0
TWI79G0161 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 1.1e-12 78.2 169 60.9
HPP92_009365 Vanilla planifolia HOM05D003347 ORTHO05D003821 2.5e-12 77.0 170 55.9
Zm00001eb197610 Zea mays HOM05D003347 ORTHO05D003821 2.5e-12 77.0 286 49.0
AUR62042720 Chenopodium quinoa HOM05D003347 ORTHO05D003821 4.3e-12 76.3 196 59.2
CDE06G2842 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 5.6e-12 75.9 280 59.6
Nn5g28237 Nelumbo nucifera HOM05D003347 ORTHO05D003821 7.3e-12 75.5 270 58.9
MD08G1229300 Malus domestica HOM05D003347 ORTHO05D003821 2.1e-11 73.9 151 58.3
PGR102G0439 Punica granatum HOM05D003347 ORTHO05D003821 2.1e-11 73.9 164 62.2
CDE08G0312 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 2.8e-11 73.6 281 49.1
Dinv34344 Davidia involucrata HOM05D003347 ORTHO05D003821 1.8e-10 70.9 169 56.8
ClCG09G014210 Citrullus lanatus HOM05D003347 ORTHO05D003821 4.0e-10 69.7 318 47.5
ECA236G0662 Erigeron canadensis HOM05D003347 ORTHO05D003821 9.0e-10 68.6 290 58.6
AL6G23960 Arabidopsis lyrata HOM05D012923 ORTHO05D014747 1.2e-09 68.2 168 56.5
CiPaw.06G147300 Carya illinoinensis HOM05D003347 ORTHO05D003821 3.4e-09 66.6 196 65.8
AT5G13340 Arabidopsis thaliana HOM05D012923 ORTHO05D014747 4.4e-09 66.2 168 54.8
Nn1g08766 Nelumbo nucifera HOM05D003347 ORTHO05D003821 5.8e-09 65.9 130 59.2
EL10Ac6g14071 Beta vulgaris HOM05D003347 ORTHO05D003821 2.9e-08 63.5 280 58.9
SGA_v2.0_scaffold1G00306 Striga asiatica HOM05D003347 ORTHO05D003821 3.8e-08 63.2 197 63.5
Zm00001eb113690 Zea mays HOM05D003347 ORTHO05D003821 3.8e-08 63.2 193 51.8
QL11p018508 Quercus lobata HOM05D003347 ORTHO05D003821 4.9e-08 62.8 162 76.5
Sp1g09610 Schrenkiella parvula HOM05D003347 ORTHO05D003821 6.4e-08 62.4 132 55.3
vmacro12779 Vaccinium macrocarpon HOM05D003347 ORTHO05D003821 6.4e-08 62.4 113 61.9
Hma1.2p1_0930F.1_g238020 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 8.4e-08 62.0 168 55.4
Solyc05g056460.4 Solanum lycopersicum HOM05D003347 ORTHO05D003821 1.9e-07 60.8 165 60.0
FAN25G2408 Fragaria x ananassa HOM05D003347 ORTHO05D003821 2.4e-07 60.5 303 61.7
HanXRQChr03g0071751 Helianthus annuus HOM05D003347 ORTHO05D003821 2.4e-07 60.5 198 57.6
PGSC0003DMG400023323 Solanum tuberosum HOM05D003347 ORTHO05D003821 2.4e-07 60.5 165 62.4
SEGI_15810 Sequoiadendron giganteum HOM05D003347 ORTHO05D003821 4.2e-07 59.7 278 65.8
Dinv24283 Davidia involucrata HOM05D003347 ORTHO05D003821 7.1e-07 58.9 195 55.4
Cpa.g.sc113.60 Carica papaya HOM05D003347 ORTHO05D003821 1.2e-06 58.2 197 63.5
Ca_00076_v3 Cicer arietinum L. HOM05D005880 ORTHO05D007114 2.1e-06 57.4 29 100.0
Cc02_g22510 Coffea canephora HOM05D003347 ORTHO05D003821 2.1e-06 57.4 163 63.2
MD15G1423300 Malus domestica HOM05D003347 ORTHO05D003821 2.1e-06 57.4 168 57.1
A06p07670 Brassica napus HOM05D003347 ORTHO05D003821 3.5e-06 56.6 204 49.5
BolC5t29665H Brassica oleracea HOM05D003347 ORTHO05D003821 3.5e-06 56.6 200 53.0
Nitab4.5_0000496g0140 Nicotiana tabacum HOM05D003347 ORTHO05D003821 4.6e-06 56.2 82 62.2
CARHR051920 Cardamine hirsuta HOM05D003347 ORTHO05D003821 7.9e-06 55.5 161 62.7


User provided reference genes

Program Settings