Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G185900 Glycine max HOM05D005359 ORTHO05D006431 8.4e-246 853.2 420 100.0
Glyma.15G046900 Glycine max HOM05D005359 ORTHO05D006431 3.4e-231 804.7 420 94.0
Lj6g0011599 Lotus japonicus HOM05D005359 ORTHO05D006431 6.1e-212 740.7 420 86.0
arahy.Tifrunner.gnm1.ann1.8TZ9EP Arachis hypogaea HOM05D005359 ORTHO05D006431 6.7e-211 737.3 420 85.0
arahy.Tifrunner.gnm1.ann1.HK0KDN Arachis hypogaea HOM05D005359 ORTHO05D006431 4.4e-210 734.6 420 84.8
VMungo0540G0616 Vigna mungo HOM05D005359 ORTHO05D006431 1.0e-206 723.4 420 83.3
Lj4g0002358 Lotus japonicus HOM05D005359 ORTHO05D006431 5.7e-202 707.6 425 80.9
Glyma.08G127900 Glycine max HOM05D005359 ORTHO05D006431 5.0e-198 694.5 421 81.0
Ca_00078_v3 Cicer arietinum L. HOM05D005359 ORTHO05D006431 6.5e-198 694.1 419 80.0
Phvul.002G250300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 1.9e-197 692.6 420 79.8
Phvul.006G214300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 2.5e-197 692.2 421 79.6
Glyma.05G169600 Glycine max HOM05D005359 ORTHO05D006431 3.6e-196 688.3 421 80.3
VMungo0251G3193 Vigna mungo HOM05D005359 ORTHO05D006431 1.8e-195 686.0 420 79.5
TPR.G2126 Trifolium pratense HOM05D005359 ORTHO05D006431 1.5e-194 682.9 420 79.3
Medtr2g007220 Medicago truncatula HOM05D005359 ORTHO05D006431 2.0e-194 682.6 420 78.6
CiPaw.06G147600 Carya illinoinensis HOM05D005359 ORTHO05D006431 1.2e-191 673.3 420 76.9
Psat2g122240 Pisum sativum HOM05D005359 ORTHO05D006431 5.9e-191 671.0 420 76.9
Prupe.1G568000 Prunus persica HOM05D005359 ORTHO05D006431 3.2e-189 665.2 420 76.7
Lalb_Chr20g0123431 Lupinus albus HOM05D005359 ORTHO05D006431 1.6e-188 662.9 420 75.7
RcHm_v2.0_Chr7g0222501 Rosa chinensis HOM05D005359 ORTHO05D006431 1.8e-187 659.4 420 75.2
Eucgr.I02722 Eucalyptus grandis HOM05D005359 ORTHO05D006431 1.2e-186 656.8 420 75.5
COL.COLO4_17869 Corchorus olitorius HOM05D005359 ORTHO05D006431 3.4e-186 655.2 420 74.0
Potri.003G019400 Populus trichocarpa HOM05D005359 ORTHO05D006431 5.7e-186 654.4 420 75.7
MD15G1422700 Malus domestica HOM05D005359 ORTHO05D006431 9.8e-186 653.7 420 75.5
Ciclev10001293m.g Citrus clementina HOM05D005359 ORTHO05D006431 2.8e-185 652.1 420 74.3
Thecc.02G038700 Theobroma cacao HOM05D005359 ORTHO05D006431 2.8e-185 652.1 420 74.5
Sabra01G0162800 Salix brachista HOM05D005359 ORTHO05D006431 3.7e-185 651.7 420 74.8
Cpa.g.sc113.63 Carica papaya HOM05D005359 ORTHO05D006431 4.9e-185 651.4 420 74.5
TWI14G1253 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 8.3e-185 650.6 420 73.8
Duzib052G1228 Durio zibethinus HOM05D005359 ORTHO05D006431 1.1e-184 650.2 420 74.3
Manes.07G015400 Manihot esculenta HOM05D005359 ORTHO05D006431 1.1e-184 650.2 420 74.0
Potri.001G210800 Populus trichocarpa HOM05D005359 ORTHO05D006431 2.0e-183 646.0 420 74.5
QL08p043348 Quercus lobata HOM05D005359 ORTHO05D006431 2.7e-183 645.6 419 74.2
CANSAT11G0924 Cannabis sativa HOM05D005359 ORTHO05D006431 3.5e-183 645.2 420 73.8
Sabra03G0010900 Salix brachista HOM05D005359 ORTHO05D006431 5.9e-183 644.4 420 74.3
Dinv19364 Davidia involucrata HOM05D005359 ORTHO05D006431 1.0e-182 643.7 420 73.6
TWI23G0911 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 1.0e-182 643.7 420 72.9
Cfa005525 Carpinus fangiana HOM05D005359 ORTHO05D006431 3.3e-181 638.6 420 73.8
Haze_01666 Corylus avellana HOM05D005359 ORTHO05D006431 3.3e-181 638.6 420 74.0
Gohir.A01G178400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 4.3e-181 638.3 420 71.9
Gohir.D01G169300 Gossypium hirsutum HOM05D005359 ORTHO05D006431 4.3e-181 638.3 420 72.1
Gorai.008G042100 Gossypium raimondii HOM05D005359 ORTHO05D006431 4.3e-181 638.3 420 72.9
Gorai.002G210900 Gossypium raimondii HOM05D005359 ORTHO05D006431 5.6e-181 637.9 420 72.1
Dinv24279 Davidia involucrata HOM05D005359 ORTHO05D006431 1.2e-180 636.7 420 72.9
CANSAT11G2649 Cannabis sativa HOM05D005359 ORTHO05D006431 2.8e-180 635.6 421 73.2
Gohir.A12G031900 Gossypium hirsutum HOM05D005359 ORTHO05D006431 2.8e-180 635.6 420 72.4
Gohir.D12G040400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 4.7e-180 634.8 420 72.6
PGR042G0198 Punica granatum HOM05D005359 ORTHO05D006431 4.7e-180 634.8 420 71.7
CSS0002632 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 1.0e-179 633.6 420 73.1
Sed0010360 Sechium edule HOM05D005359 ORTHO05D006431 1.0e-179 633.6 420 72.4
FvH4_5g29550 Fragaria vesca HOM05D005359 ORTHO05D006431 6.8e-179 630.9 420 72.1
FAN18G3183 Fragaria x ananassa HOM05D005359 ORTHO05D006431 6.8e-179 630.9 420 72.1
CSS0043414 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 1.5e-178 629.8 420 72.6
MD08G1228700 Malus domestica HOM05D005359 ORTHO05D006431 1.5e-178 629.8 405 75.3
FAN08G1144 Fragaria x ananassa HOM05D005359 ORTHO05D006431 9.8e-178 627.1 420 71.9
Rhsim11G0129700 Rhododendron simsii HOM05D005359 ORTHO05D006431 1.7e-177 626.3 420 71.9
vmacro01763 Vaccinium macrocarpon HOM05D005359 ORTHO05D006431 3.2e-176 622.1 420 70.7
FAN13G1157 Fragaria x ananassa HOM05D005359 ORTHO05D006431 1.2e-175 620.2 420 70.7
Lj5A252T45 Lonicera japonica HOM05D005359 ORTHO05D006431 4.6e-175 618.2 420 71.0
ClCG09G014240 Citrullus lanatus HOM05D005359 ORTHO05D006431 6.6e-174 614.4 420 70.2
THA.LOC104819321 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 3.3e-173 612.1 421 70.8
Oeu008891.1 Olea europaea HOM05D005359 ORTHO05D006431 9.5e-173 610.5 420 70.5
Nn5g28206 Nelumbo nucifera HOM05D005359 ORTHO05D006431 3.6e-172 608.6 420 70.0
MSTRG.5231 Avicennia marina HOM05D005359 ORTHO05D006431 6.2e-172 607.8 420 70.5
CsaV3_6G037270 Cucumis sativus L. HOM05D005359 ORTHO05D006431 6.2e-172 607.8 420 69.3
Cc02_g22460 Coffea canephora HOM05D005359 ORTHO05D006431 8.0e-172 607.4 420 68.6
DCAR_013987 Daucus carota HOM05D005359 ORTHO05D006431 2.0e-170 602.8 420 67.4
SalBow6G6401 Salvia bowleyana HOM05D005359 ORTHO05D006431 3.4e-170 602.1 420 70.2
THA.LOC104809588 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 2.9e-169 599.0 420 69.3
Aa31LG1G4050 Aethionema arabicum HOM05D005359 ORTHO05D006431 4.9e-169 598.2 420 68.3
MELO3C014388.2 Cucumis melo HOM05D005359 ORTHO05D006431 1.9e-168 596.3 410 69.0
TAR628G1654 Trochodendron aralioides HOM05D005359 ORTHO05D006431 1.9e-168 596.3 420 68.3
Lalb_Chr07g0185731 Lupinus albus HOM05D005359 ORTHO05D006431 9.2e-168 594.0 421 68.6
CiPaw.05G044000 Carya illinoinensis HOM05D005359 ORTHO05D006431 2.7e-167 592.4 420 70.0
AUR62002965 Chenopodium quinoa HOM05D005359 ORTHO05D006431 2.7e-167 592.4 425 68.2
TAR376G0200 Trochodendron aralioides HOM05D005359 ORTHO05D006431 2.7e-167 592.4 420 68.1
AUR62007773 Chenopodium quinoa HOM05D005359 ORTHO05D006431 4.6e-167 591.7 425 68.2
DCAR_031890 Daucus carota HOM05D005359 ORTHO05D006431 4.6e-167 591.7 416 67.1
Lsat_1_v5_gn_5_109981 Lactuca sativa HOM05D005359 ORTHO05D006431 4.6e-167 591.7 421 68.4
EL10Ac6g14556 Beta vulgaris HOM05D005359 ORTHO05D006431 6.0e-167 591.3 425 68.5
Hund05788 Selenicereus undatus HOM05D005359 ORTHO05D006431 1.7e-166 589.7 423 67.8
Thhalv10007703m.g Eutrema salsugineum HOM05D005359 ORTHO05D006431 1.2e-164 583.6 420 68.1
HanXRQChr16g0514561 Helianthus annuus HOM05D005359 ORTHO05D006431 4.7e-164 581.6 420 66.9
AL1G21710 Arabidopsis lyrata HOM05D005359 ORTHO05D006431 8.1e-164 580.9 420 67.4
ECA234G2063 Erigeron canadensis HOM05D005359 ORTHO05D006431 1.8e-163 579.7 420 65.2
Peaxi162Scf00011g00352 Petunia axillaris HOM05D005359 ORTHO05D006431 1.8e-163 579.7 421 68.6
GSVIVG01022967001 Vitis vinifera HOM05D005359 ORTHO05D006431 3.1e-163 578.9 423 67.8
HanXRQChr10g0289981 Helianthus annuus HOM05D005359 ORTHO05D006431 6.8e-163 577.8 420 65.2
AT1G10780 Arabidopsis thaliana HOM05D005359 ORTHO05D006431 1.5e-162 576.6 420 66.7
Carub.0001s1033 Capsella rubella HOM05D005359 ORTHO05D006431 4.4e-162 575.1 420 66.0
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 3.7e-161 572.0 407 68.3
HanXRQChr06g0169581 Helianthus annuus HOM05D005359 ORTHO05D006431 1.9e-160 569.7 420 65.7
Nitab4.5_0007420g0030 Nicotiana tabacum HOM05D005359 ORTHO05D006431 5.4e-160 568.2 421 67.9
Sp1g09480 Schrenkiella parvula HOM05D005359 ORTHO05D006431 3.5e-159 565.5 420 65.2
CARHR011000 Cardamine hirsuta HOM05D005359 ORTHO05D006431 6.6e-158 561.2 420 65.0
Sc16g0001650 Simmondsia chinensis HOM05D005359 ORTHO05D006431 6.6e-158 561.2 424 65.8
unitig_26.g9020 Utricularia gibba HOM05D005359 ORTHO05D006431 6.6e-158 561.2 420 65.0
A09p64680 Brassica napus HOM05D005359 ORTHO05D006431 4.3e-157 558.5 420 64.8
BraA09t41824Z Brassica rapa HOM05D005359 ORTHO05D006431 7.3e-157 557.8 420 64.8
BolC8t52390H Brassica oleracea HOM05D005359 ORTHO05D006431 1.6e-156 556.6 420 64.3
C08p48500 Brassica napus HOM05D005359 ORTHO05D006431 4.7e-156 555.1 420 64.0
Migut.N01041 Erythranthe guttata HOM05D005359 ORTHO05D006431 1.1e-155 553.9 420 63.6
Aqoxy5G02275 Aquilegia oxysepala HOM05D005359 ORTHO05D006431 8.9e-155 550.8 422 63.3
Sed0018525 Sechium edule HOM05D005359 ORTHO05D006431 2.2e-153 546.2 420 62.6
PGSC0003DMG400023758 Solanum tuberosum HOM05D005359 ORTHO05D006431 1.1e-149 533.9 420 64.8
CAN.G1577.14 Capsicum annuum HOM05D005359 ORTHO05D006431 1.6e-148 530.0 421 64.4
MBI06_g20718_MAGBIO Magnolia biondii HOM05D005359 ORTHO05D006431 1.6e-148 530.0 420 59.0
Nitab4.5_0002245g0060 Nicotiana tabacum HOM05D005359 ORTHO05D006431 4.7e-148 528.5 421 64.8
ECA236G4790 Erigeron canadensis HOM05D005359 ORTHO05D006431 6.2e-148 528.1 377 67.1
Sopen01g046670 Solanum pennellii HOM05D005359 ORTHO05D006431 1.8e-147 526.6 420 63.6
ATR0193G009 Amborella trichopoda HOM05D005359 ORTHO05D006431 4.9e-145 518.5 420 59.3
Ah.03g138120 Amaranthus hybridus HOM05D005359 ORTHO05D006431 3.6e-140 502.3 425 59.3
Os09g0454300 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 4.5e-138 495.4 421 56.5
Solyc01g104230.4 Solanum lycopersicum HOM05D005359 ORTHO05D006431 1.3e-129 467.2 356 66.6
Zm00001eb100430 Zea mays HOM05D005359 ORTHO05D006431 6.0e-127 458.4 405 55.1
Zm00001eb176520 Zea mays HOM05D005359 ORTHO05D006431 1.1e-125 454.1 425 52.7
Zm00001eb037840 Zea mays HOM05D005359 ORTHO05D006431 7.6e-122 441.4 425 52.0
Mapoly0113s0005 Marchantia polymorpha HOM05D005359 ORTHO05D006431 1.9e-112 410.2 411 47.7
Hma1.2p1_0217F.1_g092010 Hydrangea macrophylla HOM05D005359 ORTHO05D006431 7.2e-112 408.3 250 78.8
Thecc.02G038500 Theobroma cacao HOM05D005359 ORTHO05D006431 1.6e-111 407.1 282 68.1
Os08g0469500 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 2.4e-107 393.3 422 47.6
Lsat_1_v5_gn_4_48740 Lactuca sativa HOM05D005359 ORTHO05D006431 2.1e-103 380.2 365 54.0
SMO169G0280 Selaginella moellendorffii HOM05D005359 ORTHO05D006431 9.7e-93 344.7 412 44.4
AagrBONN_evm.TU.Sc2ySwM_117.2184 Anthoceros agrestis HOM05D005359 ORTHO05D006431 2.8e-92 343.2 374 47.3
Oeu033126.1 Olea europaea HOM05D005359 ORTHO05D006431 9.4e-88 328.2 302 57.0
HPP92_010977 Vanilla planifolia HOM05D005359 ORTHO05D006431 1.2e-85 321.2 305 53.4
Nn1g08733 Nelumbo nucifera HOM05D005359 ORTHO05D006431 1.8e-83 313.9 248 60.5
arahy.Tifrunner.gnm1.ann1.3FYK03 Arachis hypogaea HOM05D005359 ORTHO05D006431 4.4e-77 292.7 266 59.8
CDE11G1073 Ceratophyllum demersum HOM05D005359 ORTHO05D006431 1.9e-72 277.3 317 44.2
Atru.chr6.646 Acer truncatum HOM05D005359 ORTHO05D006431 5.4e-59 232.6 134 79.1
BcaC05g24954 Brassica carinata HOM05D005359 ORTHO05D006431 1.7e-44 184.5 155 60.0
Dinv24276 Davidia involucrata HOM05D005359 ORTHO05D006431 7.1e-43 179.1 131 65.6
arahy.Tifrunner.gnm1.ann1.BYQ4G2 Arachis hypogaea HOM05D005359 ORTHO05D006431 1.0e-41 175.3 99 80.8
arahy.Tifrunner.gnm1.ann1.94J17Q Arachis hypogaea HOM05D005359 ORTHO05D006431 2.6e-37 160.6 91 80.2
arahy.Tifrunner.gnm1.ann1.E0G9L5 Arachis hypogaea HOM05D005359 ORTHO05D006431 4.4e-29 133.3 74 79.7
arahy.Tifrunner.gnm1.ann1.B308TG Arachis hypogaea HOM05D005359 ORTHO05D006431 1.3e-28 131.7 71 81.7
arahy.Tifrunner.gnm1.ann1.F717DE Arachis hypogaea HOM05D005359 ORTHO05D006431 4.2e-27 126.7 71 80.3
arahy.Tifrunner.gnm1.ann1.HDLM7U Arachis hypogaea HOM05D005359 ORTHO05D006431 6.0e-26 122.9 71 78.9
arahy.Tifrunner.gnm1.ann1.X0Q2J1 Arachis hypogaea HOM05D005359 ORTHO05D006431 6.0e-26 122.9 71 78.9
Oeu056678.1 Olea europaea HOM05D005359 ORTHO05D006431 2.4e-19 100.9 79 58.2
MSTRG.27843 Avicennia marina HOM05D005359 ORTHO05D006431 2.7e-18 97.4 102 52.9
MBI05_g43550_MAGBIO Magnolia biondii HOM05D003488 ORTHO05D004214 1.9e-08 64.7 276 26.1
HanXRQChr05g0139821 Helianthus annuus HOM05D001396 ORTHO05D000493 7.4e-08 62.8 237 24.9
MBI05_g08793_MAGBIO Magnolia biondii HOM05D003488 ORTHO05D004214 1.3e-07 62.0 276 26.1
SGA_v2.0_scaffold24G10274 Striga asiatica HOM05D000312 ORTHO05D000221 1.4e-06 58.5 207 23.7
Sp6g18220 Schrenkiella parvula HOM05D000051 ORTHO05D000015 2.4e-06 57.8 231 24.2
HanXRQChr03g0060651 Helianthus annuus HOM05D006588 ORTHO05D008272 3.1e-06 57.4 238 23.9
HanXRQChr03g0060671 Helianthus annuus HOM05D006588 ORTHO05D008272 3.1e-06 57.4 238 23.9
AL1G32030 Arabidopsis lyrata HOM05D000051 ORTHO05D000015 4.0e-06 57.0 295 21.0
FAN02G0832 Fragaria x ananassa HOM05D000862 ORTHO05D001182 4.0e-06 57.0 217 23.5
FAN02G0884 Fragaria x ananassa HOM05D001477 ORTHO05D001182 4.0e-06 57.0 217 23.5
PGR083G1286 Punica granatum HOM05D000312 ORTHO05D000221 4.0e-06 57.0 211 24.6
HanXRQChr03g0060681 Helianthus annuus HOM05D006588 ORTHO05D008272 5.3e-06 56.6 238 23.9
Peaxi162Scf00179g00923 Petunia axillaris HOM05D000312 ORTHO05D000221 5.3e-06 56.6 174 27.6


User provided reference genes

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