Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G183700 Glycine max HOM05D005305 ORTHO05D006394 2.6e-189 665.2 337 100.0
Phvul.006G211300 Phaseolus vulgaris HOM05D005305 ORTHO05D006394 5.1e-92 342.0 299 67.2
VMungo0540G1828 Vigna mungo HOM05D005305 ORTHO05D006394 3.4e-80 302.8 305 61.6
Lj6g0020123 Lotus japonicus HOM05D005305 ORTHO05D006394 1.3e-71 274.2 319 56.4
Ca_00097_v3 Cicer arietinum L. HOM05D005305 ORTHO05D006394 8.4e-71 271.6 341 52.5
Ca_29935_v3 Cicer arietinum L. HOM05D005305 ORTHO05D006394 8.4e-71 271.6 341 52.5
Medtr2g007870 Medicago truncatula HOM05D005305 ORTHO05D006394 4.8e-66 255.8 350 48.0
Psat1g219600 Pisum sativum HOM05D005305 ORTHO05D006394 1.9e-62 243.8 291 53.6
TPR.G19715 Trifolium pratense HOM05D005305 ORTHO05D006394 2.4e-62 243.4 270 55.9
Lalb_Chr15g0090581 Lupinus albus HOM05D005305 ORTHO05D006394 1.5e-51 207.6 339 46.3
arahy.Tifrunner.gnm1.ann1.I1A2NR Arachis hypogaea HOM05D005305 ORTHO05D006394 1.1e-49 201.4 329 45.0
arahy.Tifrunner.gnm1.ann1.ZL3PAB Arachis hypogaea HOM05D005305 ORTHO05D006394 2.4e-49 200.3 330 44.8
MD15G1420000 Malus domestica HOM05D005305 ORTHO05D006394 1.9e-38 164.1 273 45.1
Prupe.1G566000 Prunus persica HOM05D005305 ORTHO05D006394 1.9e-38 164.1 314 42.0
FAN04G1743 Fragaria x ananassa HOM05D005305 ORTHO05D006394 4.6e-37 159.5 274 44.2
Sed0001621 Sechium edule HOM05D005305 ORTHO05D006394 1.4e-36 157.9 268 43.7
FvH4_5g29740 Fragaria vesca HOM05D005305 ORTHO05D006394 3.9e-36 156.4 277 43.7
CiPaw.05G041500 Carya illinoinensis HOM05D005305 ORTHO05D006394 2.2e-34 150.6 237 45.6
FAN08G2621 Fragaria x ananassa HOM05D005305 ORTHO05D006394 3.7e-34 149.8 272 41.9
ClCG09G014160 Citrullus lanatus HOM05D005305 ORTHO05D006394 4.8e-34 149.4 293 41.6
RcHm_v2.0_Chr7g0223251 Rosa chinensis HOM05D005305 ORTHO05D006394 6.3e-34 149.1 276 40.9
FAN13G2550 Fragaria x ananassa HOM05D005305 ORTHO05D006394 3.1e-33 146.7 230 45.2
Dinv19341 Davidia involucrata HOM05D005305 ORTHO05D006394 4.1e-33 146.4 266 38.0
CSS0043111 Camellia sinensis var. sinensis HOM05D005305 ORTHO05D006394 1.5e-32 144.4 289 36.3
CsaV3_6G037300 Cucumis sativus L. HOM05D005305 ORTHO05D006394 1.5e-32 144.4 314 36.9
Aqoxy6G00392 Aquilegia oxysepala HOM05D005305 ORTHO05D006394 5.9e-32 142.5 255 40.8
MELO3C014385.2 Cucumis melo HOM05D005305 ORTHO05D006394 1.0e-31 141.7 305 37.0
A08p31700 Brassica napus HOM05D005305 ORTHO05D006394 2.2e-31 140.6 180 47.2
Lj1C922T21 Lonicera japonica HOM05D005305 ORTHO05D006394 3.8e-31 139.8 249 39.4
HanXRQChr10g0300271 Helianthus annuus HOM05D005305 ORTHO05D006394 8.5e-31 138.7 173 47.4
Lsat_1_v5_gn_5_107520 Lactuca sativa HOM05D005305 ORTHO05D006394 8.5e-31 138.7 259 37.8
Actinidia33832 Actinidia chinensis HOM05D005305 ORTHO05D006394 1.4e-30 137.9 221 43.4
ECA236G3147 Erigeron canadensis HOM05D005305 ORTHO05D006394 3.2e-30 136.7 167 47.9
BraA08t35092Z Brassica rapa HOM05D005305 ORTHO05D006394 4.2e-30 136.3 181 47.0
Sed0003606 Sechium edule HOM05D005305 ORTHO05D006394 4.2e-30 136.3 253 40.7
BcaB03g13072 Brassica carinata HOM05D005305 ORTHO05D006394 5.5e-30 136.0 199 44.2
AL1G27270 Arabidopsis lyrata HOM05D005305 ORTHO05D006394 1.6e-29 134.4 218 42.7
Oeu000200.2 Olea europaea HOM05D005305 ORTHO05D006394 1.6e-29 134.4 258 39.1
BcaC07g38772 Brassica carinata HOM05D005305 ORTHO05D006394 2.7e-29 133.7 211 43.1
C08p17050 Brassica napus HOM05D005305 ORTHO05D006394 2.7e-29 133.7 211 43.1
BolC8t49330H Brassica oleracea HOM05D005305 ORTHO05D006394 2.7e-29 133.7 211 43.1
HanXRQChr11g0337491 Helianthus annuus HOM05D005305 ORTHO05D006394 3.6e-29 133.3 177 44.1
AT1G15190 Arabidopsis thaliana HOM05D005305 ORTHO05D006394 1.4e-28 131.3 219 41.6
Thhalv10009974m.g Eutrema salsugineum HOM05D005305 ORTHO05D006394 1.4e-28 131.3 177 45.2
BcaB02g06584 Brassica carinata HOM05D005305 ORTHO05D006394 1.8e-28 131.0 177 44.6
Sp1g13500 Schrenkiella parvula HOM05D005305 ORTHO05D006394 2.3e-28 130.6 203 44.8
QL11p019060 Quercus lobata HOM05D005305 ORTHO05D006394 5.1e-28 129.4 304 35.2
Carub.0001s1494 Capsella rubella HOM05D005305 ORTHO05D006394 6.7e-28 129.0 172 45.3
BolC5t30066H Brassica oleracea HOM05D005305 ORTHO05D006394 8.8e-28 128.6 183 43.2
FvH4_2g02450 Fragaria vesca HOM05D005305 ORTHO05D006394 1.5e-27 127.9 172 47.1
BcaC05g25447 Brassica carinata HOM05D005305 ORTHO05D006394 2.6e-27 127.1 177 43.5
C05p13290 Brassica napus HOM05D005305 ORTHO05D006394 2.6e-27 127.1 177 43.5
Lsat_1_v5_gn_7_79481 Lactuca sativa HOM05D005305 ORTHO05D006394 4.4e-27 126.3 177 41.2
FAN15G2678 Fragaria x ananassa HOM05D005305 ORTHO05D006394 7.4e-27 125.6 184 42.4
FAN22G2313 Fragaria x ananassa HOM05D005305 ORTHO05D006394 7.4e-27 125.6 173 46.8
MBI17_g24510_MAGBIO Magnolia biondii HOM05D005305 ORTHO05D006394 9.7e-27 125.2 186 41.9
A06p11170 Brassica napus HOM05D005305 ORTHO05D006394 1.3e-26 124.8 208 40.9
HanXRQChr10g0294801 Helianthus annuus HOM05D005305 ORTHO05D006394 2.2e-26 124.0 259 38.2
Atru.chr6.974 Acer truncatum HOM05D005305 ORTHO05D006394 2.8e-26 123.6 184 43.5
BraA06t24297Z Brassica rapa HOM05D005305 ORTHO05D006394 2.8e-26 123.6 232 38.8
MBI17_g24663_MAGBIO Magnolia biondii HOM05D005305 ORTHO05D006394 5.3e-25 119.4 165 43.0
Aa31LG2G8790 Aethionema arabicum HOM05D005305 ORTHO05D006394 9.1e-25 118.6 195 38.5
CARHR015700 Cardamine hirsuta HOM05D005305 ORTHO05D006394 1.2e-24 118.2 243 38.3
FvH4_2g02380 Fragaria vesca HOM05D005305 ORTHO05D006394 1.2e-24 118.2 171 44.4
Ciclev10001162m.g Citrus clementina HOM05D005305 ORTHO05D006394 2.0e-24 117.5 273 38.1
Sp2g12560 Schrenkiella parvula HOM05D005305 ORTHO05D006394 5.9e-24 115.9 211 36.0
ECA234G0387 Erigeron canadensis HOM05D005305 ORTHO05D006394 1.0e-23 115.2 150 44.0
Gohir.D12G092500 Gossypium hirsutum HOM05D005305 ORTHO05D006394 1.7e-23 114.4 204 39.7
Gorai.008G100000 Gossypium raimondii HOM05D005305 ORTHO05D006394 1.7e-23 114.4 204 39.7
Gohir.A11G210433 Gossypium hirsutum HOM05D005305 ORTHO05D006394 2.2e-23 114.0 164 42.1
A02p31660 Brassica napus HOM05D005305 ORTHO05D006394 2.9e-23 113.6 146 42.5
Nn5g28774 Nelumbo nucifera HOM05D005305 ORTHO05D006394 2.9e-23 113.6 208 35.6
BolC2t10994H Brassica oleracea HOM05D005305 ORTHO05D006394 6.5e-23 112.5 146 42.5
Duzib187G0918 Durio zibethinus HOM05D005305 ORTHO05D006394 4.2e-22 109.8 201 37.8
Potri.001G306800 Populus trichocarpa HOM05D005305 ORTHO05D006394 2.1e-21 107.5 178 38.2
FAN02G4273 Fragaria x ananassa HOM05D005305 ORTHO05D006394 3.6e-21 106.7 108 54.6
TWI31G0537 Tripterygium wilfordii HOM05D005305 ORTHO05D006394 8.0e-21 105.5 246 37.0
TAR624G0561 Trochodendron aralioides HOM05D005305 ORTHO05D006394 1.8e-20 104.4 162 37.7
Nn1g06067 Nelumbo nucifera HOM05D005305 ORTHO05D006394 4.0e-20 103.2 271 32.1
FvH4_4g13350 Fragaria vesca HOM05D005305 ORTHO05D006394 6.7e-20 102.4 137 46.0
FAN02G0608 Fragaria x ananassa HOM05D005305 ORTHO05D006394 6.7e-20 102.4 106 54.7
Nitab4.5_0002138g0070 Nicotiana tabacum HOM05D005305 ORTHO05D006394 8.8e-20 102.1 145 44.1
SalBow5G2993 Salvia bowleyana HOM05D005305 ORTHO05D006394 8.8e-20 102.1 201 37.3
CAN.G516.6 Capsicum annuum HOM05D005305 ORTHO05D006394 1.5e-19 101.3 149 45.0
Nitab4.5_0001582g0090 Nicotiana tabacum HOM05D005305 ORTHO05D006394 1.5e-19 101.3 168 40.5
Sabra19G0004600 Salix brachista HOM05D005305 ORTHO05D006394 2.0e-19 100.9 241 32.8
Cpa.g.sc72.34 Carica papaya HOM05D005305 ORTHO05D006394 2.6e-19 100.5 205 38.0
PGR042G0513 Punica granatum HOM05D005305 ORTHO05D006394 5.7e-19 99.4 256 34.4
Solyc11g005490.1 Solanum lycopersicum HOM05D005305 ORTHO05D006394 5.7e-19 99.4 152 43.4
Sopen11g001490 Solanum pennellii HOM05D005305 ORTHO05D006394 5.7e-19 99.4 152 43.4
FAN20G0407 Fragaria x ananassa HOM05D005305 ORTHO05D006394 9.7e-19 98.6 178 39.3
FAN20G1442 Fragaria x ananassa HOM05D005305 ORTHO05D006394 9.7e-19 98.6 178 39.3
FAN20G2254 Fragaria x ananassa HOM05D005305 ORTHO05D006394 9.7e-19 98.6 178 39.3
FAN20G2361 Fragaria x ananassa HOM05D005305 ORTHO05D006394 9.7e-19 98.6 178 39.3
Thecc.01G118700 Theobroma cacao HOM05D005305 ORTHO05D006394 9.7e-19 98.6 171 40.4
FAN02G3216 Fragaria x ananassa HOM05D005305 ORTHO05D006394 1.7e-18 97.8 173 40.5
PGSC0003DMG400035592 Solanum tuberosum HOM05D005305 ORTHO05D006394 1.7e-18 97.8 152 42.1
Atru.chr4.616 Acer truncatum HOM05D005305 ORTHO05D006394 3.7e-18 96.7 163 36.2
Manes.13G081800 Manihot esculenta HOM05D005305 ORTHO05D006394 3.7e-18 96.7 206 35.0
TWI79G0764 Tripterygium wilfordii HOM05D005305 ORTHO05D006394 3.7e-18 96.7 158 39.9
FAN05G3957 Fragaria x ananassa HOM05D005305 ORTHO05D006394 6.3e-18 95.9 108 50.0
BraA02t08169Z Brassica rapa HOM05D005305 ORTHO05D006394 8.2e-18 95.5 147 37.4
AUR62005501 Chenopodium quinoa HOM05D005305 ORTHO05D006394 1.4e-17 94.7 251 34.3
FvH4_2g04910 Fragaria vesca HOM05D005305 ORTHO05D006394 1.4e-17 94.7 165 41.2
Potri.019G002300 Populus trichocarpa HOM05D005305 ORTHO05D006394 2.4e-17 94.0 186 35.5
Manes.12G149900 Manihot esculenta HOM05D005305 ORTHO05D006394 3.1e-17 93.6 187 35.3
Ah.03g133360 Amaranthus hybridus HOM05D005305 ORTHO05D006394 2.7e-16 90.5 199 33.7
COL.COLO4_22382 Corchorus olitorius HOM05D005305 ORTHO05D006394 3.5e-16 90.1 201 37.3
Migut.L00049 Erythranthe guttata HOM05D005305 ORTHO05D006394 3.5e-16 90.1 177 35.6
Sc04g0009640 Simmondsia chinensis HOM05D005305 ORTHO05D006394 4.5e-16 89.7 269 32.7
FAN24G2323 Fragaria x ananassa HOM05D005305 ORTHO05D006394 7.7e-16 89.0 178 37.1
AUR62024239 Chenopodium quinoa HOM05D005305 ORTHO05D006394 1.0e-15 88.6 251 32.3
Oeu035198.1 Olea europaea HOM05D005305 ORTHO05D006394 1.3e-15 88.2 237 32.1
SGA_v2.0_scaffold47G17682 Striga asiatica HOM05D005305 ORTHO05D006394 1.7e-15 87.8 226 37.2
FAN12G2268 Fragaria x ananassa HOM05D005305 ORTHO05D006394 2.9e-15 87.0 120 45.0
FvH4_4g36540 Fragaria vesca HOM05D005305 ORTHO05D006394 3.8e-15 86.7 120 45.0
Dinv02718 Davidia involucrata HOM05D005305 ORTHO05D006394 8.5e-15 85.5 134 40.3
PSO730G0002 Papaver somniferum HOM05D005305 ORTHO05D006394 1.1e-14 85.1 243 28.8
unitig_32.g10686 Utricularia gibba HOM05D005305 ORTHO05D006394 4.2e-14 83.2 234 32.5
DCAR_001409 Daucus carota HOM05D005305 ORTHO05D006394 1.6e-13 81.3 216 33.3
ATR0311G001 Amborella trichopoda HOM05D005305 ORTHO05D006394 6.8e-12 75.9 209 34.4
C02p49000 Brassica napus HOM05D005305 ORTHO05D006394 2.6e-11 73.9 91 44.0
FAN22G1821 Fragaria x ananassa HOM05D005305 ORTHO05D006394 4.4e-11 73.2 77 54.5
ECA248G2956 Erigeron canadensis HOM05D005305 ORTHO05D006394 6.3e-10 69.3 126 37.3
FvH4_3g08610 Fragaria vesca HOM05D005305 ORTHO05D006394 1.6e-08 64.7 111 41.4
FAN11G0652 Fragaria x ananassa HOM05D005305 ORTHO05D006394 2.7e-08 63.9 108 38.0
VMungo1309G2162 Vigna mungo HOM05D001216 ORTHO05D027542 3.5e-08 63.5 82 52.4
EL10Ac5g10610 Beta vulgaris HOM05D005423 ORTHO05D006223 1.0e-07 62.0 136 33.8
Lalb_Chr11g0073251 Lupinus albus HOM05D005423 ORTHO05D006223 1.3e-07 61.6 96 39.6
AUR62008091 Chenopodium quinoa HOM05D005423 ORTHO05D006223 2.9e-07 60.5 111 34.2
EL10Ac5g10674 Beta vulgaris HOM05D005423 ORTHO05D006223 5.0e-07 59.7 123 35.0
AUR62028667 Chenopodium quinoa HOM05D005423 ORTHO05D006223 5.0e-07 59.7 141 30.5
FAN20G2269 Fragaria x ananassa HOM05D005305 ORTHO05D006394 5.0e-07 59.7 71 52.1
TAR381G1643 Trochodendron aralioides HOM05D005305 ORTHO05D006394 6.5e-07 59.3 148 35.1
Aa31sc535G20 Aethionema arabicum HOM05D007205 ORTHO05D009175 8.5e-07 58.9 96 36.5
EL10Ac5g10640 Beta vulgaris HOM05D005423 ORTHO05D006223 8.5e-07 58.9 124 34.7
AUR62028668 Chenopodium quinoa HOM05D005423 ORTHO05D006223 8.5e-07 58.9 153 28.8
VMungo1309G2120 Vigna mungo HOM05D001216 ORTHO05D027542 8.5e-07 58.9 82 51.2
Aa31sc352G60 Aethionema arabicum HOM05D007205 ORTHO05D009175 1.5e-06 58.2 96 36.5
COL.COLO4_20450 Corchorus olitorius HOM05D002727 ORTHO05D002856 1.5e-06 58.2 133 29.3
Aa31sc1365G10 Aethionema arabicum HOM05D007205 ORTHO05D009175 1.9e-06 57.8 96 36.5
AUR62008092 Chenopodium quinoa HOM05D005423 ORTHO05D006223 2.5e-06 57.4 153 28.1
ClCG01G006130 Citrullus lanatus HOM05D002727 ORTHO05D002856 3.2e-06 57.0 148 28.4
EL10Ac6g13873 Beta vulgaris HOM05D005305 ORTHO05D006394 4.2e-06 56.6 124 38.7
EL10Ac6g14255 Beta vulgaris HOM05D002727 ORTHO05D002856 4.2e-06 56.6 132 31.8
Medtr8g092370 Medicago truncatula HOM05D006072 ORTHO05D007363 4.2e-06 56.6 108 36.1
Medtr8g092700 Medicago truncatula HOM05D006072 ORTHO05D007363 4.2e-06 56.6 108 36.1
Rhsim06G0154800 Rhododendron simsii HOM05D007205 ORTHO05D009175 7.2e-06 55.8 100 35.0
Aa31sc352G30 Aethionema arabicum HOM05D007205 ORTHO05D009175 9.5e-06 55.5 96 35.4
C03p81290 Brassica napus HOM05D000250 ORTHO05D015314 9.5e-06 55.5 76 42.1
DCAR_019203 Daucus carota HOM05D007205 ORTHO05D009175 9.5e-06 55.5 143 32.2
ECA233G0199 Erigeron canadensis HOM05D007205 ORTHO05D009175 9.5e-06 55.5 97 35.1


User provided reference genes

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