Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G176500 Glycine max HOM05D004022 ORTHO05D004090 1.4e-44 182.6 91 100.0
Glyma.15G249800 Glycine max HOM05D004022 ORTHO05D004090 1.2e-40 169.5 90 92.2
Phvul.005G051400 Phaseolus vulgaris HOM05D004022 ORTHO05D004090 2.7e-32 141.7 90 80.0
Ca_03390_v3 Cicer arietinum L. HOM05D004022 ORTHO05D004090 1.7e-26 122.5 94 72.3
Lalb_Chr25g0285381 Lupinus albus HOM05D004022 ORTHO05D004090 2.9e-26 121.7 105 63.8
Lj3g0000459 Lotus japonicus HOM05D004022 ORTHO05D004090 1.1e-25 119.8 105 63.8
Medtr2g070550 Medicago truncatula HOM05D004022 ORTHO05D004090 9.3e-25 116.7 89 69.7
TPR.G26630 Trifolium pratense HOM05D004022 ORTHO05D004090 1.3e-23 112.8 93 68.8
TPR.G2234 Trifolium pratense HOM05D004022 ORTHO05D004090 6.7e-23 110.5 94 69.1
QL04p070411 Quercus lobata HOM05D004022 ORTHO05D004090 1.3e-18 96.3 94 56.4
QL04p070436 Quercus lobata HOM05D004022 ORTHO05D004090 1.3e-18 96.3 94 56.4
QL04p070376 Quercus lobata HOM05D004022 ORTHO05D004090 3.8e-18 94.7 94 55.3
Lj3g0019101 Lotus japonicus HOM05D004022 ORTHO05D004090 4.2e-17 91.3 96 57.3
arahy.Tifrunner.gnm1.ann1.NFB54Z Arachis hypogaea HOM05D004022 ORTHO05D004090 1.6e-16 89.4 120 45.0
Thecc.07G146700 Theobroma cacao HOM05D004022 ORTHO05D004090 2.1e-16 89.0 103 51.5
arahy.Tifrunner.gnm1.ann1.I20P02 Arachis hypogaea HOM05D004022 ORTHO05D004090 7.9e-16 87.0 120 45.0
Duzib213G0178 Durio zibethinus HOM05D004022 ORTHO05D004090 1.8e-15 85.9 99 53.5
Lalb_Chr19g0133591 Lupinus albus HOM05D004022 ORTHO05D004090 5.1e-15 84.3 98 53.1
Haze_08493 Corylus avellana HOM05D004022 ORTHO05D004090 8.8e-15 83.6 86 55.8
Cfa019453 Carpinus fangiana HOM05D004022 ORTHO05D004090 1.9e-14 82.4 87 52.9
Potri.011G095900 Populus trichocarpa HOM05D004022 ORTHO05D004090 2.5e-14 82.0 104 48.1
Sabra16G0249100 Salix brachista HOM05D004022 ORTHO05D004090 4.3e-14 81.3 109 47.7
Migut.M00652 Erythranthe guttata HOM05D004022 ORTHO05D004090 5.7e-14 80.9 90 52.2
TAR627G0510 Trochodendron aralioides HOM05D004022 ORTHO05D004090 5.7e-14 80.9 97 51.5
Gohir.D01G029300 Gossypium hirsutum HOM05D004022 ORTHO05D004090 7.4e-14 80.5 101 46.5
Gorai.002G038600 Gossypium raimondii HOM05D004022 ORTHO05D004090 7.4e-14 80.5 101 46.5
COL.COLO4_17416 Corchorus olitorius HOM05D004022 ORTHO05D004090 9.7e-14 80.1 96 50.0
Prupe.4G149000 Prunus persica HOM05D004022 ORTHO05D004090 9.7e-14 80.1 128 39.8
PGR083G0572 Punica granatum HOM05D004022 ORTHO05D004090 9.7e-14 80.1 83 56.6
SalBow8G5432 Salvia bowleyana HOM05D004022 ORTHO05D004090 1.3e-13 79.7 90 51.1
SalBow8G0217 Salvia bowleyana HOM05D004022 ORTHO05D004090 1.7e-13 79.3 89 51.7
Actinidia35177 Actinidia chinensis HOM05D004022 ORTHO05D004090 2.2e-13 79.0 84 51.2
Duzib268G0389 Durio zibethinus HOM05D004022 ORTHO05D004090 2.2e-13 79.0 96 49.0
Potri.001G378300 Populus trichocarpa HOM05D004022 ORTHO05D004090 4.8e-13 77.8 111 45.9
TWI38G0355 Tripterygium wilfordii HOM05D004022 ORTHO05D004090 4.8e-13 77.8 83 51.8
CsaV3_4G007830 Cucumis sativus L. HOM05D004022 ORTHO05D004090 1.1e-12 76.6 79 53.2
CAN.G1003.7 Capsicum annuum HOM05D004022 ORTHO05D004090 1.4e-12 76.3 87 51.7
DCAR_021057 Daucus carota HOM05D004022 ORTHO05D004090 1.8e-12 75.9 89 51.7
CSS0036966 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 2.4e-12 75.5 94 50.0
Cpa.g.sc2579.1 Carica papaya HOM05D004022 ORTHO05D004090 3.1e-12 75.1 110 43.6
ECA236G3547 Erigeron canadensis HOM05D004022 ORTHO05D004090 3.1e-12 75.1 83 48.2
ClCG07G010500 Citrullus lanatus HOM05D004022 ORTHO05D004090 4.1e-12 74.7 79 51.9
ClCG07G010510 Citrullus lanatus HOM05D004022 ORTHO05D004090 4.1e-12 74.7 79 51.9
MELO3C016156.2 Cucumis melo HOM05D004022 ORTHO05D004090 5.3e-12 74.3 79 51.9
Sc03g0007740 Simmondsia chinensis HOM05D004022 ORTHO05D004090 6.9e-12 73.9 93 49.5
CANSAT56G3333 Cannabis sativa HOM05D004022 ORTHO05D004090 1.5e-11 72.8 110 42.7
FAN16G3013 Fragaria x ananassa HOM05D004022 ORTHO05D004090 2.0e-11 72.4 123 37.4
RcHm_v2.0_Chr5g0027761 Rosa chinensis HOM05D004022 ORTHO05D004090 2.0e-11 72.4 126 40.5
AUR62012877 Chenopodium quinoa HOM05D004022 ORTHO05D004090 2.6e-11 72.0 97 48.5
FAN21G1087 Fragaria x ananassa HOM05D004022 ORTHO05D004090 2.6e-11 72.0 123 35.0
Medtr6g042010 Medicago truncatula HOM05D004022 ORTHO05D004090 3.4e-11 71.6 105 46.7
CSS0046120 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 4.5e-11 71.2 87 50.6
AUR62027101 Chenopodium quinoa HOM05D004022 ORTHO05D004090 4.5e-11 71.2 131 39.7
Rhsim06G0184700 Rhododendron simsii HOM05D004022 ORTHO05D004090 4.5e-11 71.2 79 53.2
COL.COLO4_31065 Corchorus olitorius HOM05D004022 ORTHO05D004090 5.9e-11 70.9 109 42.2
Gohir.A04G046900 Gossypium hirsutum HOM05D004022 ORTHO05D004090 5.9e-11 70.9 89 44.9
HanXRQChr15g0492271 Helianthus annuus HOM05D004022 ORTHO05D004090 5.9e-11 70.9 87 44.8
Peaxi162Scf00000g00573 Petunia axillaris HOM05D004022 ORTHO05D004090 1.3e-10 69.7 103 45.6
QL05p057789 Quercus lobata HOM05D004022 ORTHO05D004090 1.3e-10 69.7 106 42.5
FAN11G3697 Fragaria x ananassa HOM05D004022 ORTHO05D004090 1.7e-10 69.3 123 36.6
Gorai.009G154700 Gossypium raimondii HOM05D004022 ORTHO05D004090 1.7e-10 69.3 113 40.7
Medtr6g041990 Medicago truncatula HOM05D004022 ORTHO05D004090 1.7e-10 69.3 88 50.0
Gohir.D05G150601 Gossypium hirsutum HOM05D004022 ORTHO05D004090 2.2e-10 68.9 113 40.7
EL10Ac9g22063 Beta vulgaris HOM05D004022 ORTHO05D004090 2.9e-10 68.6 131 37.4
Lsat_1_v5_gn_7_101361 Lactuca sativa HOM05D004022 ORTHO05D004090 2.9e-10 68.6 85 43.5
Solyc07g056600.1 Solanum lycopersicum HOM05D004022 ORTHO05D004090 2.9e-10 68.6 98 44.9
Psat1g075360 Pisum sativum HOM05D004022 ORTHO05D004090 3.8e-10 68.2 97 51.5
THA.LOC104813977 Tarenaya hassleriana HOM05D004022 ORTHO05D004090 3.8e-10 68.2 105 43.8
Migut.M00647 Erythranthe guttata HOM05D004022 ORTHO05D004090 5.0e-10 67.8 108 43.5
Migut.M00651 Erythranthe guttata HOM05D004022 ORTHO05D004090 5.0e-10 67.8 95 45.3
Nitab4.5_0005080g0020 Nicotiana tabacum HOM05D004022 ORTHO05D004090 5.0e-10 67.8 99 41.4
Dinv32245 Davidia involucrata HOM05D004022 ORTHO05D004090 6.5e-10 67.4 102 46.1
Gohir.A05G148100 Gossypium hirsutum HOM05D004022 ORTHO05D004090 6.5e-10 67.4 113 39.8
Lsat_1_v5_gn_7_101401 Lactuca sativa HOM05D004022 ORTHO05D004090 6.5e-10 67.4 91 41.8
Manes.17G070600 Manihot esculenta HOM05D004022 ORTHO05D004090 6.5e-10 67.4 102 43.1
Migut.M00648 Erythranthe guttata HOM05D004022 ORTHO05D004090 8.5e-10 67.0 96 43.8
Sopen07g029950 Solanum pennellii HOM05D004022 ORTHO05D004090 8.5e-10 67.0 98 44.9
PGSC0003DMG400027649 Solanum tuberosum HOM05D004022 ORTHO05D004090 1.1e-09 66.6 96 46.9
TPR.G19691 Trifolium pratense HOM05D004022 ORTHO05D004090 1.1e-09 66.6 96 50.0
AL2G38780 Arabidopsis lyrata HOM05D004022 ORTHO05D004090 2.5e-09 65.5 109 40.4
Haze_05605 Corylus avellana HOM05D004022 ORTHO05D004090 2.5e-09 65.5 100 39.0
Eucgr.F01407 Eucalyptus grandis HOM05D004022 ORTHO05D004090 2.5e-09 65.5 107 44.9
FAN25G3340 Fragaria x ananassa HOM05D004022 ORTHO05D004090 2.5e-09 65.5 119 35.3
Duzib160G0057 Durio zibethinus HOM05D004022 ORTHO05D004090 3.2e-09 65.1 116 40.5
Thecc.06G149800 Theobroma cacao HOM05D004022 ORTHO05D004090 3.2e-09 65.1 113 40.7
Nitab4.5_0000505g0120 Nicotiana tabacum HOM05D004022 ORTHO05D004090 4.2e-09 64.7 87 44.8
Duzib235G0028 Durio zibethinus HOM05D004022 ORTHO05D004090 5.5e-09 64.3 112 35.7
Nitab4.5_0001924g0010 Nicotiana tabacum HOM05D004022 ORTHO05D004090 5.5e-09 64.3 102 39.2
Sed0009467 Sechium edule HOM05D004022 ORTHO05D004090 7.2e-09 63.9 80 51.2
Eucgr.F01408 Eucalyptus grandis HOM05D004022 ORTHO05D004090 9.4e-09 63.5 103 42.7
Peaxi162Scf00111g00083 Petunia axillaris HOM05D004022 ORTHO05D004090 9.4e-09 63.5 105 42.9
AT1G17147 Arabidopsis thaliana HOM05D004022 ORTHO05D004090 1.2e-08 63.2 96 39.6
A06p13050 Brassica napus HOM05D004022 ORTHO05D004090 1.2e-08 63.2 86 44.2
Gohir.D05G333300 Gossypium hirsutum HOM05D004022 ORTHO05D004090 1.2e-08 63.2 87 41.4
Duzib192G0777 Durio zibethinus HOM05D004022 ORTHO05D004090 1.6e-08 62.8 117 39.3
BcaB02g07170 Brassica carinata HOM05D004022 ORTHO05D004090 2.1e-08 62.4 87 42.5
AL1G29370 Arabidopsis lyrata HOM05D004022 ORTHO05D004090 2.7e-08 62.0 96 39.6
Sp5g33510 Schrenkiella parvula HOM05D004022 ORTHO05D004090 2.7e-08 62.0 108 38.9
Dinv26665 Davidia involucrata HOM05D004022 ORTHO05D004090 3.6e-08 61.6 40 75.0
Migut.M00649 Erythranthe guttata HOM05D004022 ORTHO05D004090 3.6e-08 61.6 70 45.7
unitig_899.g15299 Utricularia gibba HOM05D004022 ORTHO05D004090 3.6e-08 61.6 83 45.8
BcaC05g25663 Brassica carinata HOM05D004022 ORTHO05D004090 4.7e-08 61.2 84 41.7
BcaC08g45417 Brassica carinata HOM05D004022 ORTHO05D004090 4.7e-08 61.2 104 40.4
A07p27550 Brassica napus HOM05D004022 ORTHO05D004090 4.7e-08 61.2 104 37.5
C06p30490 Brassica napus HOM05D004022 ORTHO05D004090 4.7e-08 61.2 104 40.4
BolC6t38212H Brassica oleracea HOM05D004022 ORTHO05D004090 4.7e-08 61.2 104 40.4
BraA07t30397Z Brassica rapa HOM05D004022 ORTHO05D004090 4.7e-08 61.2 104 37.5
BraA06t24464Z Brassica rapa HOM05D004022 ORTHO05D004090 6.1e-08 60.8 86 43.0
Peaxi162Scf00035g00165 Petunia axillaris HOM05D004022 ORTHO05D004090 6.1e-08 60.8 103 41.7
BcaC08g47415 Brassica carinata HOM05D004022 ORTHO05D004090 7.9e-08 60.5 98 37.8
Atru.chr10.1218 Acer truncatum HOM05D004022 ORTHO05D004090 1.0e-07 60.1 96 42.7
AT1G78410 Arabidopsis thaliana HOM05D004022 ORTHO05D004090 1.0e-07 60.1 107 38.3
BraA07t31879Z Brassica rapa HOM05D004022 ORTHO05D004090 1.0e-07 60.1 102 38.2
BcaB05g25138 Brassica carinata HOM05D004022 ORTHO05D004090 1.4e-07 59.7 104 38.5
C05p15530 Brassica napus HOM05D004022 ORTHO05D004090 1.4e-07 59.7 84 40.5
CARHR017720 Cardamine hirsuta HOM05D004022 ORTHO05D004090 1.4e-07 59.7 94 39.4
Thhalv10009187m.g Eutrema salsugineum HOM05D004022 ORTHO05D004090 1.4e-07 59.7 84 39.3
HanXRQChr11g0330361 Helianthus annuus HOM05D004022 ORTHO05D004090 1.4e-07 59.7 95 38.9
Carub.0001s1689 Capsella rubella HOM05D004022 ORTHO05D004090 1.8e-07 59.3 95 38.9
CAN.G904.20 Capsicum annuum HOM05D004022 ORTHO05D004090 1.8e-07 59.3 81 45.7
CiPaw.09G122900 Carya illinoinensis HOM05D004022 ORTHO05D004090 1.8e-07 59.3 107 37.4
unitig_746.g26690 Utricularia gibba HOM05D004022 ORTHO05D004090 1.8e-07 59.3 83 48.2
BcaB03g13015 Brassica carinata HOM05D004022 ORTHO05D004090 2.3e-07 58.9 84 40.5
C02p35580 Brassica napus HOM05D004022 ORTHO05D004090 2.3e-07 58.9 106 37.7
Nn3g20789 Nelumbo nucifera HOM05D004022 ORTHO05D004090 2.3e-07 58.9 99 40.4
Nn3g20790 Nelumbo nucifera HOM05D004022 ORTHO05D004090 2.3e-07 58.9 99 40.4
A07p43670 Brassica napus HOM05D004022 ORTHO05D004090 3.0e-07 58.5 102 37.3
BcaC03g15811 Brassica carinata HOM05D004022 ORTHO05D004090 3.9e-07 58.2 106 38.7
A02p22170 Brassica napus HOM05D004022 ORTHO05D004090 3.9e-07 58.2 106 38.7
BraA02t07221Z Brassica rapa HOM05D004022 ORTHO05D004090 3.9e-07 58.2 106 38.7
Thhalv10019550m.g Eutrema salsugineum HOM05D004022 ORTHO05D004090 3.9e-07 58.2 93 38.7
Nitab4.5_0000639g0190 Nicotiana tabacum HOM05D004022 ORTHO05D004090 3.9e-07 58.2 95 45.3
BcaB07g34047 Brassica carinata HOM05D004022 ORTHO05D004090 5.1e-07 57.8 84 40.5
BolC5t30263H Brassica oleracea HOM05D004022 ORTHO05D004090 5.1e-07 57.8 84 39.3
Gohir.D10G042200 Gossypium hirsutum HOM05D004022 ORTHO05D004090 5.1e-07 57.8 106 38.7
Gorai.011G044800 Gossypium raimondii HOM05D004022 ORTHO05D004090 5.1e-07 57.8 106 38.7
BcaC07g38833 Brassica carinata HOM05D004022 ORTHO05D004090 6.7e-07 57.4 85 41.2
C08p17730 Brassica napus HOM05D004022 ORTHO05D004090 6.7e-07 57.4 85 41.2
Carub.0002s2531 Capsella rubella HOM05D004022 ORTHO05D004090 6.7e-07 57.4 110 39.1
DCAR_019636 Daucus carota HOM05D004022 ORTHO05D004090 6.7e-07 57.4 83 38.6
RhsimUnG0204300 Rhododendron simsii HOM05D004022 ORTHO05D004090 6.7e-07 57.4 31 90.3
A08p31100 Brassica napus HOM05D004022 ORTHO05D004090 8.8e-07 57.0 85 40.0
BolC2t09573H Brassica oleracea HOM05D004022 ORTHO05D004090 8.8e-07 57.0 101 38.6
BolC6t40255H Brassica oleracea HOM05D004022 ORTHO05D004090 8.8e-07 57.0 102 37.3
BraA08t35036Z Brassica rapa HOM05D004022 ORTHO05D004090 8.8e-07 57.0 85 40.0
CAN.G262.11 Capsicum annuum HOM05D004022 ORTHO05D004090 8.8e-07 57.0 88 44.3
Glyma.08G096000 Glycine max HOM05D012904 ORTHO05D004090 1.1e-06 56.6 103 37.9
BcaB03g16016 Brassica carinata HOM05D004022 ORTHO05D004090 1.5e-06 56.2 98 39.8
CSS0009778 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 1.5e-06 56.2 85 47.1
Sed0018028 Sechium edule HOM05D024889 ORTHO05D004090 2.0e-06 55.8 93 38.7
Aa31LG4G2550 Aethionema arabicum HOM05D004022 ORTHO05D004090 2.6e-06 55.5 34 76.5
Aa31LG7G1990 Aethionema arabicum HOM05D004022 ORTHO05D004090 2.6e-06 55.5 89 41.6
CiPaw.10G091400 Carya illinoinensis HOM05D004022 ORTHO05D004090 2.6e-06 55.5 106 36.8
FvH4_3g16620 Fragaria vesca HOM05D004022 ORTHO05D004090 2.6e-06 55.5 40 70.0
Sp1g15290 Schrenkiella parvula HOM05D004022 ORTHO05D004090 2.6e-06 55.5 92 35.9
Glyma.05G140700 Glycine max HOM05D012904 ORTHO05D004090 3.3e-06 55.1 105 36.2
Gohir.A10G041400 Gossypium hirsutum HOM05D004022 ORTHO05D004090 3.3e-06 55.1 110 36.4
Psat1g188880 Pisum sativum HOM05D012904 ORTHO05D004090 3.3e-06 55.1 93 35.5
PGSC0003DMG400007842 Solanum tuberosum HOM05D001023 ORTHO05D000912 3.3e-06 55.1 44 59.1
THA.LOC104812289 Tarenaya hassleriana HOM05D004022 ORTHO05D004090 3.3e-06 55.1 91 38.5
BolC8t49399H Brassica oleracea HOM05D004022 ORTHO05D004090 4.4e-06 54.7 84 40.5
CsaV3_6G051770 Cucumis sativus L. HOM05D024889 ORTHO05D004090 4.4e-06 54.7 91 37.4
C06p52350 Brassica napus HOM05D004022 ORTHO05D004090 5.7e-06 54.3 41 63.4
Nn3g20788 Nelumbo nucifera HOM05D004022 ORTHO05D004090 5.7e-06 54.3 91 39.6
MBI10_g46499_MAGBIO Magnolia biondii HOM05D004022 ORTHO05D004090 7.4e-06 53.9 97 36.1
Solyc10g007580.1 Solanum lycopersicum HOM05D004022 ORTHO05D004090 7.4e-06 53.9 85 38.8
Sopen10g003500 Solanum pennellii HOM05D004022 ORTHO05D004090 7.4e-06 53.9 85 38.8
Sopen12g006680 Solanum pennellii HOM05D004022 ORTHO05D004090 7.4e-06 53.9 44 56.8


User provided reference genes

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