Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G176100 Glycine max HOM05D007217 ORTHO05D009092 4.7e-77 291.2 155 100.0
Glyma.15G250400 Glycine max HOM05D007217 ORTHO05D009092 3.1e-68 261.9 155 91.0
Phvul.008G108200 Phaseolus vulgaris HOM05D007217 ORTHO05D009092 1.1e-52 210.3 155 76.1
VMungo1383G0797 Vigna mungo HOM05D007217 ORTHO05D009092 9.9e-51 203.8 140 76.4
Lj5g0013157 Lotus japonicus HOM05D007217 ORTHO05D009092 1.9e-49 199.5 145 75.2
Lj6g0006317 Lotus japonicus HOM05D007217 ORTHO05D009092 2.2e-42 176.0 124 75.8
Medtr8g011490 Medicago truncatula HOM05D007217 ORTHO05D009092 1.1e-41 173.7 145 64.8
Lalb_Chr16g0392431 Lupinus albus HOM05D007217 ORTHO05D009092 4.8e-37 158.3 155 60.6
Psat0s5329g0080 Pisum sativum HOM05D007217 ORTHO05D009092 7.6e-35 151.0 135 62.2
Psat4g125640 Pisum sativum HOM05D007217 ORTHO05D009092 4.2e-33 145.2 155 56.8
arahy.Tifrunner.gnm1.ann1.3NP1QY Arachis hypogaea HOM05D007217 ORTHO05D009092 2.4e-28 129.4 137 55.5
arahy.Tifrunner.gnm1.ann1.TIKV1F Arachis hypogaea HOM05D007217 ORTHO05D009092 3.4e-27 125.6 118 59.3
arahy.Tifrunner.gnm1.ann1.Z0SJI2 Arachis hypogaea HOM05D007217 ORTHO05D009092 4.5e-27 125.2 118 58.5
Ciclev10029535m.g Citrus clementina HOM05D007217 ORTHO05D009092 1.9e-25 119.8 106 55.7
Ciclev10018165m.g Citrus clementina HOM05D007217 ORTHO05D009092 2.1e-24 116.3 122 54.1
Atru.chr10.619 Acer truncatum HOM05D007217 ORTHO05D009092 2.7e-24 115.9 106 55.7
TWI09G0788 Tripterygium wilfordii HOM05D007217 ORTHO05D009092 3.9e-23 112.1 100 56.0
FvH4_3g11820 Fragaria vesca HOM05D007217 ORTHO05D009092 1.5e-22 110.2 135 43.7
TWI09G0397 Tripterygium wilfordii HOM05D007217 ORTHO05D009092 1.5e-22 110.2 103 53.4
Rhsim09G0182200 Rhododendron simsii HOM05D007217 ORTHO05D009092 2.5e-22 109.4 117 51.3
RcHm_v2.0_Chr5g0019241 Rosa chinensis HOM05D007217 ORTHO05D009092 3.3e-22 109.0 135 43.7
ClCG07G002120 Citrullus lanatus HOM05D007217 ORTHO05D009092 5.7e-22 108.2 129 48.1
Rhsim02G0191400 Rhododendron simsii HOM05D007217 ORTHO05D009092 7.4e-22 107.8 117 50.4
CiPaw.10G112300 Carya illinoinensis HOM05D007217 ORTHO05D009092 1.3e-21 107.1 104 53.8
Manes.02G204000 Manihot esculenta HOM05D007217 ORTHO05D009092 1.6e-21 106.7 104 51.9
GSVIVG01019606001 Vitis vinifera HOM05D007217 ORTHO05D009092 2.1e-21 106.3 132 46.2
Dinv20263 Davidia involucrata HOM05D007217 ORTHO05D009092 4.8e-21 105.1 140 44.3
Cpa.g.sc64.50 Carica papaya HOM05D007217 ORTHO05D009092 1.1e-20 104.0 99 51.5
QL05p062902 Quercus lobata HOM05D007217 ORTHO05D009092 1.4e-20 103.6 102 52.9
PGSC0003DMG400021318 Solanum tuberosum HOM05D007217 ORTHO05D009092 1.4e-20 103.6 130 46.9
Duzib235G1460 Durio zibethinus HOM05D007217 ORTHO05D009092 1.8e-20 103.2 96 56.2
MELO3C015565.2 Cucumis melo HOM05D007217 ORTHO05D009092 2.4e-20 102.8 104 51.9
Sopen01g003160 Solanum pennellii HOM05D007217 ORTHO05D009092 3.1e-20 102.4 130 46.2
Dinv01436 Davidia involucrata HOM05D007217 ORTHO05D009092 5.3e-20 101.7 95 52.6
MD10G1238500 Malus domestica HOM05D007217 ORTHO05D009092 6.9e-20 101.3 106 50.9
CsaV3_4G011770 Cucumis sativus L. HOM05D007217 ORTHO05D009092 9.0e-20 100.9 128 47.7
Eucgr.E04359 Eucalyptus grandis HOM05D007217 ORTHO05D009092 9.0e-20 100.9 130 47.7
MD05G1258900 Malus domestica HOM05D007217 ORTHO05D009092 1.2e-19 100.5 129 48.1
Thecc.06G135800 Theobroma cacao HOM05D007217 ORTHO05D009092 1.2e-19 100.5 114 45.6
Prupe.4G105800 Prunus persica HOM05D007217 ORTHO05D009092 2.0e-19 99.8 129 46.5
MELO3C022720.2 Cucumis melo HOM05D007217 ORTHO05D009092 2.6e-19 99.4 104 51.9
Eucgr.E02022 Eucalyptus grandis HOM05D007217 ORTHO05D009092 2.6e-19 99.4 122 47.5
THA.LOC104808222 Tarenaya hassleriana HOM05D007217 ORTHO05D009092 2.6e-19 99.4 106 50.9
Gohir.D06G146500 Gossypium hirsutum HOM05D007217 ORTHO05D009092 3.4e-19 99.0 105 48.6
Solyc01g007180.3 Solanum lycopersicum HOM05D007217 ORTHO05D009092 3.4e-19 99.0 84 60.7
Rhsim05G0134700 Rhododendron simsii HOM05D007217 ORTHO05D009092 4.5e-19 98.6 115 48.7
Gohir.A06G140100 Gossypium hirsutum HOM05D007217 ORTHO05D009092 1.0e-18 97.4 138 40.6
Potri.001G081300 Populus trichocarpa HOM05D007217 ORTHO05D009092 1.0e-18 97.4 123 44.7
Sed0002565 Sechium edule HOM05D007217 ORTHO05D009092 1.0e-18 97.4 130 42.3
CsaV3_3G030060 Cucumis sativus L. HOM05D007217 ORTHO05D009092 1.7e-18 96.7 125 44.8
Gorai.010G170900 Gossypium raimondii HOM05D007217 ORTHO05D009092 2.2e-18 96.3 128 43.8
Potri.003G149100 Populus trichocarpa HOM05D007217 ORTHO05D009092 2.9e-18 95.9 102 49.0
DCAR_031675 Daucus carota HOM05D007217 ORTHO05D009092 5.0e-18 95.1 135 40.7
Peaxi162Scf00586g00008 Petunia axillaris HOM05D007217 ORTHO05D009092 5.0e-18 95.1 127 46.5
Carub.0007s3329 Capsella rubella HOM05D007217 ORTHO05D009092 1.4e-17 93.6 96 54.2
DCAR_001337 Daucus carota HOM05D007217 ORTHO05D009092 1.4e-17 93.6 119 42.9
Rhsim04G0112200 Rhododendron simsii HOM05D007217 ORTHO05D009092 1.4e-17 93.6 148 39.9
Aa31LG4G550 Aethionema arabicum HOM05D002649 ORTHO05D002838 1.9e-17 93.2 123 48.0
AT1G80245 Arabidopsis thaliana HOM05D007217 ORTHO05D009092 1.9e-17 93.2 98 50.0
CARHR074240 Cardamine hirsuta HOM05D007217 ORTHO05D009092 1.9e-17 93.2 96 54.2
Sc06g0009730 Simmondsia chinensis HOM05D007217 ORTHO05D009092 2.5e-17 92.8 130 42.3
MBI18_g37406_MAGBIO Magnolia biondii HOM05D007217 ORTHO05D009092 3.2e-17 92.4 105 46.7
AT4G00695 Arabidopsis thaliana HOM05D007217 ORTHO05D009092 4.2e-17 92.0 97 51.5
AL2G41250 Arabidopsis lyrata HOM05D007217 ORTHO05D009092 5.5e-17 91.7 125 41.6
Nn7g37971 Nelumbo nucifera HOM05D007217 ORTHO05D009092 5.5e-17 91.7 83 57.8
Sp5g35560 Schrenkiella parvula HOM05D007217 ORTHO05D009092 5.5e-17 91.7 109 47.7
Sabra01G0058500 Salix brachista HOM05D007217 ORTHO05D009092 7.1e-17 91.3 120 43.3
Thhalv10019705m.g Eutrema salsugineum HOM05D007217 ORTHO05D009092 4.6e-16 88.6 96 53.1
AL7G47090 Arabidopsis lyrata HOM05D007217 ORTHO05D009092 1.8e-15 86.7 116 43.1
Cc01_g06080 Coffea canephora HOM05D007217 ORTHO05D009092 1.8e-15 86.7 82 51.2
EL10Ac9g22805 Beta vulgaris HOM05D007217 ORTHO05D009092 8.7e-15 84.3 87 54.0
BolC2t09757H Brassica oleracea HOM05D004952 ORTHO05D006131 8.7e-15 84.3 141 39.7
BraA02t07362Z Brassica rapa HOM05D004952 ORTHO05D006131 1.1e-14 84.0 141 40.4
FAN21G1503 Fragaria x ananassa HOM05D007217 ORTHO05D009092 1.1e-14 84.0 135 38.5
FAN16G2896 Fragaria x ananassa HOM05D007217 ORTHO05D009092 1.9e-14 83.2 135 37.8
MSTRG.12451 Avicennia marina HOM05D007217 ORTHO05D009092 3.3e-14 82.4 133 43.6
BcaC03g15989 Brassica carinata HOM05D007217 ORTHO05D009092 5.7e-14 81.6 108 46.3
C02p37450 Brassica napus HOM05D004952 ORTHO05D006131 5.7e-14 81.6 95 49.5
SGA_v2.0_scaffold3G01474 Striga asiatica HOM05D007217 ORTHO05D009092 1.3e-13 80.5 136 41.9
Gohir.A10G046700 Gossypium hirsutum HOM05D007217 ORTHO05D009092 1.6e-13 80.1 78 52.6
BcaB05g25284 Brassica carinata HOM05D004952 ORTHO05D006131 6.3e-13 78.2 95 45.3
Gorai.011G051100 Gossypium raimondii HOM05D007217 ORTHO05D009092 1.4e-12 77.0 72 54.2
Sp1g21760 Schrenkiella parvula HOM05D007217 ORTHO05D009092 1.4e-12 77.0 85 47.1
Ca_31281_v3 Cicer arietinum L. HOM05D007217 ORTHO05D009092 2.4e-12 76.3 55 67.3
TAR722G0002 Trochodendron aralioides HOM05D007217 ORTHO05D009092 3.1e-12 75.9 91 49.5
Gohir.D10G048000 Gossypium hirsutum HOM05D007217 ORTHO05D009092 4.1e-12 75.5 69 55.1
CDE03G0339 Ceratophyllum demersum HOM05D007217 ORTHO05D009092 2.6e-11 72.8 99 45.5
CDE03G0351 Ceratophyllum demersum HOM05D007217 ORTHO05D009092 5.9e-11 71.6 99 45.5
GSVIVG01013634001 Vitis vinifera HOM05D007217 ORTHO05D009092 7.7e-11 71.2 117 39.3
Migut.N02356 Erythranthe guttata HOM05D007217 ORTHO05D009092 1.7e-10 70.1 126 35.7
Lsat_1_v5_gn_4_36120 Lactuca sativa HOM05D007217 ORTHO05D009092 2.2e-10 69.7 67 50.7
Oeu043290.1 Olea europaea HOM05D007217 ORTHO05D009092 3.8e-10 68.9 83 48.2
A02p23690 Brassica napus HOM05D004952 ORTHO05D006131 8.5e-10 67.8 138 37.0
SalBow8G5173 Salvia bowleyana HOM05D007217 ORTHO05D009092 1.1e-09 67.4 62 50.0
AUR62017567 Chenopodium quinoa HOM05D007217 ORTHO05D009092 1.9e-09 66.6 109 37.6
Nitab4.5_0002858g0010 Nicotiana tabacum HOM05D007217 ORTHO05D009092 1.9e-09 66.6 89 44.9
unitig_749.g13716 Utricularia gibba HOM05D007217 ORTHO05D009092 7.2e-09 64.7 84 42.9
COL.COLO4_30930 Corchorus olitorius HOM05D007217 ORTHO05D009092 3.6e-08 62.4 49 61.2
HPP92_002517 Vanilla planifolia HOM05D007217 ORTHO05D009092 1.0e-07 60.8 87 39.1
HPP92_002534 Vanilla planifolia HOM05D007217 ORTHO05D009092 1.0e-07 60.8 87 39.1
Hund24191 Selenicereus undatus HOM05D007217 ORTHO05D009092 1.5e-06 57.0 49 59.2
Lsat_1_v5_gn_7_8820 Lactuca sativa HOM05D007217 ORTHO05D009092 2.0e-06 56.6 64 42.2
Actinidia38172 Actinidia chinensis HOM05D007217 ORTHO05D009092 4.3e-06 55.5 62 46.8
Hma1.2p1_0074F.1_g039010 Hydrangea macrophylla HOM05D007217 ORTHO05D009092 7.4e-06 54.7 110 36.4
Nitab4.5_0004758g0070 Nicotiana tabacum HOM05D007217 ORTHO05D009092 7.4e-06 54.7 116 37.1


User provided reference genes

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