Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G171000 Glycine max HOM05D002385 ORTHO05D002245 3.0e-40 167.9 78 100.0
Glyma.08G170700 Glycine max HOM05D002385 ORTHO05D002245 4.2e-26 120.9 74 82.4
Glyma.15G256300 Glycine max HOM05D002385 ORTHO05D002245 5.7e-23 110.5 74 74.3
Glyma.15G256200 Glycine max HOM05D002385 ORTHO05D002245 7.0e-21 103.6 74 70.3
Phvul.005G057500 Phaseolus vulgaris HOM05D002385 ORTHO05D002245 6.1e-17 90.5 74 66.2
Psat1g003560 Pisum sativum HOM05D002385 ORTHO05D002245 5.7e-15 84.0 75 64.0
Medtr2g069400 Medicago truncatula HOM05D002385 ORTHO05D002245 2.2e-14 82.0 73 61.6
TPR.G9750 Trifolium pratense HOM05D002385 ORTHO05D002245 6.3e-14 80.5 73 61.6
arahy.Tifrunner.gnm1.ann1.3UW96L Arachis hypogaea HOM05D002385 ORTHO05D002245 2.4e-13 78.6 72 62.5
Psat1g003480 Pisum sativum HOM05D002385 ORTHO05D002245 4.1e-13 77.8 78 60.3
Ca_03672_v3 Cicer arietinum L. HOM05D002385 ORTHO05D002245 7.0e-13 77.0 73 61.6
Lj3g0007335 Lotus japonicus HOM05D002385 ORTHO05D002245 3.5e-12 74.7 77 58.4
QL04p073225 Quercus lobata HOM05D002385 ORTHO05D002245 2.9e-11 71.6 69 56.5
Glyma.15G256000 Glycine max HOM05D002385 ORTHO05D002245 5.6e-10 67.4 78 50.0
Lalb_Chr25g0284941 Lupinus albus HOM05D002385 ORTHO05D002245 2.1e-09 65.5 79 50.6
Glyma.08G171400 Glycine max HOM05D002385 ORTHO05D002245 3.6e-09 64.7 78 47.4
Oeu056976.2 Olea europaea HOM05D002385 ORTHO05D002245 1.8e-08 62.4 86 48.8
Glyma.08G170900 Glycine max HOM05D002385 ORTHO05D002245 2.3e-08 62.0 78 47.4
Eucgr.A00900 Eucalyptus grandis HOM05D002385 ORTHO05D002245 3.1e-08 61.6 59 52.5
Eucgr.A00897 Eucalyptus grandis HOM05D002385 ORTHO05D002245 2.0e-07 58.9 57 49.1
Eucgr.A00899 Eucalyptus grandis HOM05D002385 ORTHO05D002245 2.0e-07 58.9 58 51.7
Medtr4g091090 Medicago truncatula HOM05D002385 ORTHO05D002245 2.0e-07 58.9 65 46.2
Potri.006G021600 Populus trichocarpa HOM05D002385 ORTHO05D002245 2.6e-07 58.5 69 47.8
Lj3g0003491 Lotus japonicus HOM05D002385 ORTHO05D002245 3.4e-07 58.2 64 51.6
Eucgr.A00896 Eucalyptus grandis HOM05D002385 ORTHO05D002245 9.8e-07 56.6 57 47.4
FvH4_6g39683 Fragaria vesca HOM05D002385 ORTHO05D002245 9.8e-07 56.6 63 49.2
Manes.09G073500 Manihot esculenta HOM05D002385 ORTHO05D002245 1.3e-06 56.2 54 53.7
Atru.chr11.2673 Acer truncatum HOM05D002385 ORTHO05D002245 1.7e-06 55.8 74 44.6
Eucgr.A00898 Eucalyptus grandis HOM05D002385 ORTHO05D002245 1.7e-06 55.8 57 47.4
PGSC0003DMG400019578 Solanum tuberosum HOM05D002385 ORTHO05D002245 2.2e-06 55.5 60 50.0
TPR.G9755 Trifolium pratense HOM05D002385 ORTHO05D002245 2.2e-06 55.5 63 47.6
Cfa023569 Carpinus fangiana HOM05D002385 ORTHO05D002245 2.9e-06 55.1 46 56.5
Potri.016G019201 Populus trichocarpa HOM05D002385 ORTHO05D002245 2.9e-06 55.1 62 45.2
PGR031G2469 Punica granatum HOM05D002385 ORTHO05D002245 2.9e-06 55.1 58 46.6
HanXRQChr11g0335361 Helianthus annuus HOM05D002385 ORTHO05D002245 3.7e-06 54.7 60 46.7
Psat1g011360 Pisum sativum HOM05D002385 ORTHO05D002245 3.7e-06 54.7 61 49.2
Prupe.3G187200 Prunus persica HOM05D002385 ORTHO05D002245 3.7e-06 54.7 46 50.0
CiPaw.11G059900 Carya illinoinensis HOM05D002385 ORTHO05D002245 4.9e-06 54.3 85 42.4
Medtr1g040775 Medicago truncatula HOM05D002385 ORTHO05D002245 4.9e-06 54.3 67 46.3
Medtr5g042360 Medicago truncatula HOM05D002385 ORTHO05D002245 4.9e-06 54.3 67 46.3
Nitab4.5_0003177g0010 Nicotiana tabacum HOM05D002385 ORTHO05D002245 4.9e-06 54.3 56 48.2
Medtr1g040735 Medicago truncatula HOM05D002385 ORTHO05D002245 6.4e-06 53.9 65 47.7
Sabra16G0021200 Salix brachista HOM05D002385 ORTHO05D002245 6.4e-06 53.9 58 50.0
Sabra16G0025900 Salix brachista HOM05D002385 ORTHO05D002245 6.4e-06 53.9 58 50.0
ECA240G4719 Erigeron canadensis HOM05D002385 ORTHO05D002245 8.3e-06 53.5 58 48.3
TWI60G1403 Tripterygium wilfordii HOM05D002385 ORTHO05D002245 8.3e-06 53.5 64 43.8


User provided reference genes

Program Settings