Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G170700 Glycine max HOM05D002385 ORTHO05D002245 1.7e-34 148.7 71 100.0
Glyma.15G256300 Glycine max HOM05D002385 ORTHO05D002245 2.3e-31 138.3 71 91.5
Glyma.15G256200 Glycine max HOM05D002385 ORTHO05D002245 2.9e-29 131.3 71 87.3
Glyma.08G171000 Glycine max HOM05D002385 ORTHO05D002245 3.5e-27 124.4 74 82.4
Phvul.005G057500 Phaseolus vulgaris HOM05D002385 ORTHO05D002245 2.5e-25 118.2 71 83.1
Psat1g003560 Pisum sativum HOM05D002385 ORTHO05D002245 6.8e-23 110.2 72 79.2
Medtr2g069400 Medicago truncatula HOM05D002385 ORTHO05D002245 8.9e-23 109.8 70 78.6
TPR.G9750 Trifolium pratense HOM05D002385 ORTHO05D002245 2.6e-22 108.2 70 78.6
Psat1g003480 Pisum sativum HOM05D002385 ORTHO05D002245 1.7e-21 105.5 75 76.0
Lj3g0007335 Lotus japonicus HOM05D002385 ORTHO05D002245 1.4e-20 102.4 74 74.3
arahy.Tifrunner.gnm1.ann1.3UW96L Arachis hypogaea HOM05D002385 ORTHO05D002245 1.2e-19 99.4 69 73.9
Ca_03672_v3 Cicer arietinum L. HOM05D002385 ORTHO05D002245 1.6e-19 99.0 70 74.3
Lalb_Chr25g0284941 Lupinus albus HOM05D002385 ORTHO05D002245 8.6e-18 93.2 73 69.9
Glyma.15G256000 Glycine max HOM05D002385 ORTHO05D002245 2.0e-14 82.0 74 54.1
Glyma.08G171400 Glycine max HOM05D002385 ORTHO05D002245 2.6e-14 81.6 74 55.4
Oeu056976.2 Olea europaea HOM05D002385 ORTHO05D002245 2.9e-13 78.2 69 59.4
Glyma.08G170900 Glycine max HOM05D002385 ORTHO05D002245 1.4e-12 75.9 74 54.1
QL04p073225 Quercus lobata HOM05D002385 ORTHO05D002245 1.9e-12 75.5 63 60.3
ClCG09G022550 Citrullus lanatus HOM05D002385 ORTHO05D002245 7.1e-12 73.6 70 51.4
Eucgr.A00899 Eucalyptus grandis HOM05D002385 ORTHO05D002245 2.7e-11 71.6 71 56.3
Lj3g0003491 Lotus japonicus HOM05D002385 ORTHO05D002245 2.7e-11 71.6 78 55.1
Medtr4g091090 Medicago truncatula HOM05D002385 ORTHO05D002245 1.0e-10 69.7 76 51.3
Psat1g011360 Pisum sativum HOM05D002385 ORTHO05D002245 1.0e-10 69.7 73 52.1
Eucgr.A00897 Eucalyptus grandis HOM05D002385 ORTHO05D002245 1.3e-10 69.3 71 54.9
THA.LOC104822278 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 1.3e-10 69.3 48 64.6
HanXRQChr01g0017681 Helianthus annuus HOM05D002385 ORTHO05D002245 1.7e-10 68.9 53 62.3
Eucgr.A00898 Eucalyptus grandis HOM05D002385 ORTHO05D002245 2.3e-10 68.6 71 54.9
Glyma.08G172300 Glycine max HOM05D002385 ORTHO05D002245 2.3e-10 68.6 71 53.5
TPR.G9755 Trifolium pratense HOM05D002385 ORTHO05D002245 2.3e-10 68.6 76 52.6
PGR031G2469 Punica granatum HOM05D002385 ORTHO05D002245 3.0e-10 68.2 72 54.2
Atru.chr11.2673 Acer truncatum HOM05D002385 ORTHO05D002245 3.9e-10 67.8 71 47.9
CiPaw.11G059900 Carya illinoinensis HOM05D002385 ORTHO05D002245 3.9e-10 67.8 80 46.2
Eucgr.A00896 Eucalyptus grandis HOM05D002385 ORTHO05D002245 3.9e-10 67.8 71 53.5
Eucgr.A00900 Eucalyptus grandis HOM05D002385 ORTHO05D002245 6.6e-10 67.0 73 54.8
Glyma.08G170800 Glycine max HOM05D002385 ORTHO05D002245 6.6e-10 67.0 74 51.4
Medtr1g040735 Medicago truncatula HOM05D002385 ORTHO05D002245 6.6e-10 67.0 77 50.6
Medtr2g069420 Medicago truncatula HOM05D002385 ORTHO05D002245 6.6e-10 67.0 76 52.6
Prupe.3G187200 Prunus persica HOM05D002385 ORTHO05D002245 6.6e-10 67.0 66 54.5
ECA240G4719 Erigeron canadensis HOM05D002385 ORTHO05D002245 8.6e-10 66.6 69 55.1
TPR.G9734 Trifolium pratense HOM05D002385 ORTHO05D002245 8.6e-10 66.6 72 51.4
FvH4_6g39683 Fragaria vesca HOM05D002385 ORTHO05D002245 1.1e-09 66.2 55 56.4
Medtr2g069430 Medicago truncatula HOM05D002385 ORTHO05D002245 1.1e-09 66.2 74 54.1
Psat6g029000 Pisum sativum HOM05D002385 ORTHO05D002245 1.1e-09 66.2 73 50.7
PGSC0003DMG400019578 Solanum tuberosum HOM05D002385 ORTHO05D002245 1.1e-09 66.2 70 51.4
Medtr1g040775 Medicago truncatula HOM05D002385 ORTHO05D002245 1.5e-09 65.9 77 49.4
Medtr5g042360 Medicago truncatula HOM05D002385 ORTHO05D002245 1.5e-09 65.9 77 49.4
Sed0017850 Sechium edule HOM05D002385 ORTHO05D002245 1.5e-09 65.9 81 45.7
Cfa023569 Carpinus fangiana HOM05D002385 ORTHO05D002245 1.9e-09 65.5 60 58.3
Peaxi162Scf00322g00010 Petunia axillaris HOM05D002385 ORTHO05D002245 1.9e-09 65.5 74 50.0
Manes.09G073500 Manihot esculenta HOM05D002385 ORTHO05D002245 2.5e-09 65.1 68 54.4
Dinv19617 Davidia involucrata HOM05D002385 ORTHO05D002245 3.3e-09 64.7 93 43.0
HanXRQChr11g0335361 Helianthus annuus HOM05D002385 ORTHO05D002245 3.3e-09 64.7 69 50.7
Potri.016G019201 Populus trichocarpa HOM05D002385 ORTHO05D002245 4.3e-09 64.3 71 52.1
Cfa023568 Carpinus fangiana HOM05D002385 ORTHO05D002245 5.6e-09 63.9 66 54.5
Nitab4.5_0003177g0010 Nicotiana tabacum HOM05D002385 ORTHO05D002245 5.6e-09 63.9 72 51.4
Potri.006G021600 Populus trichocarpa HOM05D002385 ORTHO05D002245 7.3e-09 63.5 71 52.1
MD17G1127900 Malus domestica HOM05D002385 ORTHO05D002245 9.5e-09 63.2 66 54.5
Oeu048060.1 Olea europaea HOM05D002385 ORTHO05D002245 1.2e-08 62.8 77 46.8
Sabra16G0021200 Salix brachista HOM05D002385 ORTHO05D002245 1.2e-08 62.8 72 51.4
Sabra16G0025900 Salix brachista HOM05D002385 ORTHO05D002245 1.2e-08 62.8 72 51.4
Solyc05g016060.4 Solanum lycopersicum HOM05D002385 ORTHO05D002245 1.2e-08 62.8 70 48.6
Sopen05g012340 Solanum pennellii HOM05D002385 ORTHO05D002245 1.6e-08 62.4 70 48.6
Atru.chr8.975 Acer truncatum HOM05D002385 ORTHO05D002245 2.1e-08 62.0 75 48.0
Atru.chr8.976 Acer truncatum HOM05D002385 ORTHO05D002245 2.1e-08 62.0 75 48.0
Actinidia11006 Actinidia chinensis HOM05D002385 ORTHO05D002245 2.1e-08 62.0 81 49.4
CANSAT64G2629 Cannabis sativa HOM05D002385 ORTHO05D002245 2.1e-08 62.0 68 48.5
Haze_13593 Corylus avellana HOM05D002385 ORTHO05D002245 2.1e-08 62.0 61 55.7
Migut.M01554 Erythranthe guttata HOM05D002385 ORTHO05D002245 2.1e-08 62.0 66 51.5
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 2.1e-08 62.0 72 48.6
Actinidia11099 Actinidia chinensis HOM05D002385 ORTHO05D002245 2.8e-08 61.6 78 46.2
Actinidia39326 Actinidia chinensis HOM05D002385 ORTHO05D002245 2.8e-08 61.6 74 47.3
Gohir.D07G190900 Gossypium hirsutum HOM05D002385 ORTHO05D002245 2.8e-08 61.6 78 48.7
Gorai.001G213300 Gossypium raimondii HOM05D002385 ORTHO05D002245 2.8e-08 61.6 78 48.7
Oeu003091.1 Olea europaea HOM05D002385 ORTHO05D002245 2.8e-08 61.6 77 46.8
Prupe.3G187300 Prunus persica HOM05D002385 ORTHO05D002245 2.8e-08 61.6 69 52.2
Thecc.07G152000 Theobroma cacao HOM05D021429 ORTHO05D022417 2.8e-08 61.6 67 47.8
HPP92_004187 Vanilla planifolia HOM05D002385 ORTHO05D002245 2.8e-08 61.6 85 47.1
Oeu012375.1 Olea europaea HOM05D002385 ORTHO05D002245 4.7e-08 60.8 75 48.0
RcHm_v2.0_Chr2g0114521 Rosa chinensis HOM05D002385 ORTHO05D002245 4.7e-08 60.8 78 46.2
Sed0023256 Sechium edule HOM05D002385 ORTHO05D002245 6.2e-08 60.5 70 45.7
TWI60G1403 Tripterygium wilfordii HOM05D002385 ORTHO05D002245 6.2e-08 60.5 72 48.6
GSVIVG01015781001 Vitis vinifera HOM05D002385 ORTHO05D002245 6.2e-08 60.5 78 47.4
GSVIVG01015789001 Vitis vinifera HOM05D002385 ORTHO05D002245 6.2e-08 60.5 78 47.4
Actinidia11007 Actinidia chinensis HOM05D002385 ORTHO05D002245 8.1e-08 60.1 79 49.4
Actinidia11100 Actinidia chinensis HOM05D003155 ORTHO05D002245 8.1e-08 60.1 67 50.7
Lalb_Chr20g0108741 Lupinus albus HOM05D002385 ORTHO05D002245 8.1e-08 60.1 77 42.9
arahy.Tifrunner.gnm1.ann1.7QB2HQ Arachis hypogaea HOM05D002385 ORTHO05D002245 1.1e-07 59.7 84 45.2
C05p03670 Brassica napus HOM05D002385 ORTHO05D002245 1.1e-07 59.7 51 56.9
ECA236G0309 Erigeron canadensis HOM05D002385 ORTHO05D002245 1.1e-07 59.7 78 47.4
C05p41120 Brassica napus HOM05D002385 ORTHO05D002245 1.4e-07 59.3 49 53.1
BolC5t29144H Brassica oleracea HOM05D002385 ORTHO05D002245 1.4e-07 59.3 51 56.9
BolC5t32855H Brassica oleracea HOM05D002385 ORTHO05D002245 1.4e-07 59.3 49 53.1
Cfa023571 Carpinus fangiana HOM05D002385 ORTHO05D002245 1.4e-07 59.3 61 54.1
COL.COLO4_07164 Corchorus olitorius HOM05D002385 ORTHO05D002245 1.4e-07 59.3 76 52.6
Haze_13596 Corylus avellana HOM05D002385 ORTHO05D002245 1.4e-07 59.3 61 54.1
Haze_13600 Corylus avellana HOM05D002385 ORTHO05D002245 1.4e-07 59.3 61 54.1
BcaC02g07945 Brassica carinata HOM05D002385 ORTHO05D002245 1.8e-07 58.9 59 50.8
BraA04t17993Z Brassica rapa HOM05D002385 ORTHO05D002245 1.8e-07 58.9 68 45.6
BraA10t42676Z Brassica rapa HOM05D002385 ORTHO05D002245 1.8e-07 58.9 51 56.9
CAN.G1202.1 Capsicum annuum HOM05D002385 ORTHO05D002245 1.8e-07 58.9 73 47.9
FAN14G0168 Fragaria x ananassa HOM05D002385 ORTHO05D002245 1.8e-07 58.9 62 48.4
Lj6g0002718 Lotus japonicus HOM05D002385 ORTHO05D002245 1.8e-07 58.9 65 52.3
Oeu048064.1 Olea europaea HOM05D002385 ORTHO05D002245 1.8e-07 58.9 66 53.0
QL04p061416 Quercus lobata HOM05D002385 ORTHO05D002245 1.8e-07 58.9 48 62.5
Duzib235G0963 Durio zibethinus HOM05D014462 ORTHO05D002245 2.4e-07 58.5 93 39.8
Migut.M00099 Erythranthe guttata HOM05D002385 ORTHO05D002245 2.4e-07 58.5 65 55.4
Gohir.A07G184100 Gossypium hirsutum HOM05D002385 ORTHO05D002245 2.4e-07 58.5 78 47.4
RcHm_v2.0_Chr2g0153751 Rosa chinensis HOM05D002385 ORTHO05D002245 2.4e-07 58.5 64 54.7
Sabra06G0015400 Salix brachista HOM05D002385 ORTHO05D002245 2.4e-07 58.5 70 52.9
GSVIVG01015779001 Vitis vinifera HOM05D002385 ORTHO05D002245 2.4e-07 58.5 65 46.2
BcaB06g28585 Brassica carinata HOM05D002385 ORTHO05D002245 3.1e-07 58.2 48 54.2
Gohir.D07G086800 Gossypium hirsutum HOM05D002385 ORTHO05D002245 3.1e-07 58.2 79 48.1
Actinidia30458 Actinidia chinensis HOM05D002385 ORTHO05D002245 4.0e-07 57.8 74 44.6
Carub.0004s1351 Capsella rubella HOM05D002385 ORTHO05D002245 4.0e-07 57.8 71 45.1
Duzib138G1429 Durio zibethinus HOM05D002385 ORTHO05D002245 4.0e-07 57.8 71 53.5
Gorai.001G092800 Gossypium raimondii HOM05D002385 ORTHO05D002245 4.0e-07 57.8 79 49.4
Aqoxy1G01477 Aquilegia oxysepala HOM05D002385 ORTHO05D002245 5.2e-07 57.4 68 50.0
FAN26G3044 Fragaria x ananassa HOM05D002385 ORTHO05D002245 5.2e-07 57.4 50 58.0
Lsat_1_v5_gn_1_82281 Lactuca sativa HOM05D019240 ORTHO05D002245 5.2e-07 57.4 51 60.8
C04p61680 Brassica napus HOM05D002385 ORTHO05D002245 6.8e-07 57.0 70 44.3
CiPaw.03G113600 Carya illinoinensis HOM05D002385 ORTHO05D002245 6.8e-07 57.0 49 59.2
Ca_03673_v3 Cicer arietinum L. HOM05D002385 ORTHO05D002245 6.8e-07 57.0 66 50.0
MD09G1137600 Malus domestica HOM05D002385 ORTHO05D002245 6.8e-07 57.0 65 49.2
Manes.05G115500 Manihot esculenta HOM05D002385 ORTHO05D002245 6.8e-07 57.0 73 39.7
Rhsim06G0138200 Rhododendron simsii HOM05D002385 ORTHO05D002245 6.8e-07 57.0 82 47.6
Ca_22650_v3 Cicer arietinum L. HOM05D002385 ORTHO05D002245 8.9e-07 56.6 63 52.4
MELO3C026402.2 Cucumis melo HOM05D002385 ORTHO05D002245 8.9e-07 56.6 61 49.2
RcHm_v2.0_Chr2g0114501 Rosa chinensis HOM05D002385 ORTHO05D002245 8.9e-07 56.6 63 52.4
Cfa023570 Carpinus fangiana HOM05D002385 ORTHO05D002245 1.2e-06 56.2 45 60.0
Eucgr.E01879 Eucalyptus grandis HOM05D002385 ORTHO05D002245 1.2e-06 56.2 69 49.3
Phvul.005G057200 Phaseolus vulgaris HOM05D002385 ORTHO05D002245 1.5e-06 55.8 62 48.4
Prupe.6G185200 Prunus persica HOM05D002385 ORTHO05D002245 1.5e-06 55.8 70 48.6
Prupe.6G185400 Prunus persica HOM05D002385 ORTHO05D002245 1.5e-06 55.8 50 58.0
Haze_13594 Corylus avellana HOM05D002385 ORTHO05D002245 2.0e-06 55.5 63 49.2
FAN23G3060 Fragaria x ananassa HOM05D002385 ORTHO05D002245 2.0e-06 55.5 50 56.0
Glyma.13G003300 Glycine max HOM05D002385 ORTHO05D002245 2.0e-06 55.5 62 50.0
THA.LOC109116124 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 2.0e-06 55.5 51 56.9
CsaV3_4G032300 Cucumis sativus L. HOM05D002385 ORTHO05D002245 2.6e-06 55.1 59 47.5
Duzib133G0918 Durio zibethinus HOM05D002385 ORTHO05D002245 2.6e-06 55.1 76 50.0
FvH4_1g21001 Fragaria vesca HOM05D002385 ORTHO05D002245 2.6e-06 55.1 73 46.6
Thecc.01G172200 Theobroma cacao HOM05D002385 ORTHO05D002245 2.6e-06 55.1 76 48.7
vmacro09249 Vaccinium macrocarpon HOM05D002385 ORTHO05D002245 2.6e-06 55.1 74 48.6
Cfa023028 Carpinus fangiana HOM05D002385 ORTHO05D002245 3.4e-06 54.7 73 45.2
Haze_13597 Corylus avellana HOM05D002385 ORTHO05D002245 3.4e-06 54.7 68 48.5
Thhalv10009262m.g Eutrema salsugineum HOM05D002385 ORTHO05D002245 3.4e-06 54.7 73 46.6
Sabra16G0021100 Salix brachista HOM05D002385 ORTHO05D002245 3.4e-06 54.7 51 52.9
Sed0001434 Sechium edule HOM05D002385 ORTHO05D002245 3.4e-06 54.7 74 45.9
CARHR004830 Cardamine hirsuta HOM05D002385 ORTHO05D002245 4.4e-06 54.3 63 52.4
ClCG11G016780 Citrullus lanatus HOM05D002385 ORTHO05D002245 4.4e-06 54.3 74 45.9
Prupe.6G185500 Prunus persica HOM05D002385 ORTHO05D002245 4.4e-06 54.3 66 50.0
Carub.0001s0465 Capsella rubella HOM05D002385 ORTHO05D002245 5.8e-06 53.9 63 47.6
Phvul.005G057400 Phaseolus vulgaris HOM05D002385 ORTHO05D002245 5.8e-06 53.9 63 47.6
RcHm_v2.0_Chr2g0153711 Rosa chinensis HOM05D002385 ORTHO05D002245 5.8e-06 53.9 64 50.0
TAR626G0681 Trochodendron aralioides HOM05D002385 ORTHO05D002245 5.8e-06 53.9 79 45.6
AL4G27550 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 9.9e-06 53.1 48 52.1
Prupe.6G185600 Prunus persica HOM05D002385 ORTHO05D002245 9.9e-06 53.1 48 54.2
vmacro12336 Vaccinium macrocarpon HOM05D002385 ORTHO05D002245 9.9e-06 53.1 80 43.8


User provided reference genes

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