Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G167100 Glycine max HOM05D003670 ORTHO05D004767 6.5e-221 770.4 380 100.0
Phvul.005G050400 Phaseolus vulgaris HOM05D003670 ORTHO05D004767 5.0e-205 717.6 380 92.6
VMungo1080G1660 Vigna mungo HOM05D003670 ORTHO05D004767 1.6e-198 696.0 372 92.2
Lj3g0014239 Lotus japonicus HOM05D003670 ORTHO05D004767 2.7e-198 695.3 379 89.2
Glyma.15G260300 Glycine max HOM05D003670 ORTHO05D004767 9.4e-196 686.8 348 97.7
Lalb_Chr25g0284691 Lupinus albus HOM05D003670 ORTHO05D004767 5.5e-188 661.0 380 84.7
Medtr2g067080 Medicago truncatula HOM05D003670 ORTHO05D004767 4.0e-186 654.8 379 83.6
Ca_03600_v3 Cicer arietinum L. HOM05D003670 ORTHO05D004767 4.4e-185 651.4 379 83.6
TPR.G33813 Trifolium pratense HOM05D003670 ORTHO05D004767 7.5e-185 650.6 380 83.4
Psat1g013760 Pisum sativum HOM05D003670 ORTHO05D004767 1.7e-184 649.4 379 82.8
Prupe.4G134300 Prunus persica HOM05D003670 ORTHO05D004767 5.4e-175 617.8 382 81.2
CiPaw.11G061900 Carya illinoinensis HOM05D003670 ORTHO05D004767 1.6e-174 616.3 381 80.1
Potri.007G069300 Populus trichocarpa HOM05D003670 ORTHO05D004767 3.5e-174 615.1 381 80.1
Gohir.D13G127300 Gossypium hirsutum HOM05D003670 ORTHO05D004767 4.6e-174 614.8 379 79.2
Hma1.2p1_0151F.1_g067325 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 3.0e-173 612.1 381 79.8
Gorai.013G142500 Gossypium raimondii HOM05D003670 ORTHO05D004767 6.6e-173 610.9 380 78.9
Manes.06G175700 Manihot esculenta HOM05D003670 ORTHO05D004767 6.6e-173 610.9 381 79.8
Thecc.07G180400 Theobroma cacao HOM05D003670 ORTHO05D004767 1.5e-172 609.8 379 78.9
MD05G1228000 Malus domestica HOM05D003670 ORTHO05D004767 5.6e-172 607.8 381 79.3
QL04p088520 Quercus lobata HOM05D003670 ORTHO05D004767 1.2e-171 606.7 406 74.9
RcHm_v2.0_Chr5g0024611 Rosa chinensis HOM05D003670 ORTHO05D004767 1.6e-171 606.3 381 80.6
Gohir.A13G123400 Gossypium hirsutum HOM05D003670 ORTHO05D004767 2.1e-171 605.9 379 78.1
TWI39G0091 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 2.8e-171 605.5 380 80.0
Manes.14G010300 Manihot esculenta HOM05D003670 ORTHO05D004767 1.4e-170 603.2 379 78.6
MD10G1208500 Malus domestica HOM05D003670 ORTHO05D004767 1.8e-170 602.8 381 80.1
FvH4_3g14990 Fragaria vesca HOM05D003670 ORTHO05D004767 1.2e-169 600.1 381 79.0
PGR031G1669 Punica granatum HOM05D003670 ORTHO05D004767 2.0e-169 599.4 382 78.0
FAN11G2825 Fragaria x ananassa HOM05D003670 ORTHO05D004767 7.5e-169 597.4 381 78.5
FAN21G1395 Fragaria x ananassa HOM05D003670 ORTHO05D004767 1.1e-167 593.6 381 78.0
CSS0006756 Camellia sinensis var. sinensis HOM05D003670 ORTHO05D004767 7.0e-167 590.9 382 77.5
FAN25G1710 Fragaria x ananassa HOM05D003670 ORTHO05D004767 7.0e-167 590.9 391 75.7
Ciclev10005196m.g Citrus clementina HOM05D003670 ORTHO05D004767 2.0e-166 589.3 381 76.6
GSVIVG01036786001 Vitis vinifera HOM05D003670 ORTHO05D004767 7.8e-166 587.4 380 76.1
CsaV3_3G018980 Cucumis sativus L. HOM05D003670 ORTHO05D004767 2.3e-165 585.9 379 75.7
TWI38G1711 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 2.3e-165 585.9 378 77.8
COL.COLO4_32264 Corchorus olitorius HOM05D003670 ORTHO05D004767 3.0e-165 585.5 346 81.8
Eucgr.F04458 Eucalyptus grandis HOM05D003670 ORTHO05D004767 3.3e-164 582.0 380 77.1
Rhsim06G0242300 Rhododendron simsii HOM05D003670 ORTHO05D004767 3.3e-164 582.0 400 73.0
TAR583G0001 Trochodendron aralioides HOM05D003670 ORTHO05D004767 1.2e-163 580.1 375 75.5
Lsat_1_v5_gn_7_110680 Lactuca sativa HOM05D003670 ORTHO05D004767 6.2e-163 577.8 380 75.3
CANSAT80G2697 Cannabis sativa HOM05D003670 ORTHO05D004767 8.1e-163 577.4 382 76.4
Nitab4.5_0006241g0010 Nicotiana tabacum HOM05D003670 ORTHO05D004767 2.3e-162 575.9 380 74.5
Duzib187G0441 Durio zibethinus HOM05D003670 ORTHO05D004767 4.0e-162 575.1 318 85.2
Sabra07G0056700 Salix brachista HOM05D003670 ORTHO05D004767 7.5e-161 570.9 400 73.0
Cfa022976 Carpinus fangiana HOM05D003670 ORTHO05D004767 2.9e-160 568.9 381 75.3
Nitab4.5_0000029g0340 Nicotiana tabacum HOM05D003670 ORTHO05D004767 4.9e-160 568.2 380 74.2
Migut.H01671 Erythranthe guttata HOM05D003670 ORTHO05D004767 5.4e-159 564.7 385 72.7
MBI02_g18168_MAGBIO Magnolia biondii HOM05D003670 ORTHO05D004767 2.7e-158 562.4 379 72.8
Peaxi162Scf00452g00333 Petunia axillaris HOM05D003670 ORTHO05D004767 3.5e-158 562.0 379 73.1
Sp5g34280 Schrenkiella parvula HOM05D003670 ORTHO05D004767 3.5e-158 562.0 376 73.7
AUR62037644 Chenopodium quinoa HOM05D003670 ORTHO05D004767 4.6e-158 561.6 381 72.7
ATR0763G120 Amborella trichopoda HOM05D003670 ORTHO05D004767 1.0e-157 560.5 380 73.7
ECA236G3562 Erigeron canadensis HOM05D003670 ORTHO05D004767 1.0e-157 560.5 318 83.3
Cc05_g16310 Coffea canephora HOM05D003670 ORTHO05D004767 1.7e-157 559.7 381 72.4
Thhalv10018699m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 1.7e-157 559.7 379 74.7
Sed0012107 Sechium edule HOM05D003670 ORTHO05D004767 3.9e-157 558.5 380 71.6
HanXRQChr11g0335601 Helianthus annuus HOM05D003670 ORTHO05D004767 8.6e-157 557.4 379 73.4
CAN.G943.51 Capsicum annuum HOM05D003670 ORTHO05D004767 1.1e-156 557.0 381 73.5
Nitab4.5_0005765g0040 Nicotiana tabacum HOM05D003670 ORTHO05D004767 1.1e-156 557.0 381 72.4
arahy.Tifrunner.gnm1.ann1.36F1KB Arachis hypogaea HOM05D003670 ORTHO05D004767 1.9e-156 556.2 349 79.9
Peaxi162Scf00006g00159 Petunia axillaris HOM05D003670 ORTHO05D004767 3.3e-156 555.4 379 73.1
PGSC0003DMG400022232 Solanum tuberosum HOM05D003670 ORTHO05D004767 5.6e-156 554.7 381 74.3
Nn7g37780 Nelumbo nucifera HOM05D003670 ORTHO05D004767 7.3e-156 554.3 347 78.4
PSO541G1524 Papaver somniferum HOM05D003670 ORTHO05D004767 1.6e-155 553.1 380 71.6
PSO675G6901 Papaver somniferum HOM05D003670 ORTHO05D004767 2.1e-155 552.7 380 71.3
Sopen07g034740 Solanum pennellii HOM05D003670 ORTHO05D004767 2.1e-155 552.7 382 73.6
AUR62039184 Chenopodium quinoa HOM05D003670 ORTHO05D004767 2.8e-155 552.4 381 71.1
CARHR016930 Cardamine hirsuta HOM05D003670 ORTHO05D004767 8.1e-155 550.8 379 72.0
Solyc07g066580.3 Solanum lycopersicum HOM05D003670 ORTHO05D004767 1.4e-154 550.1 381 73.5
EL10Ac2g03264 Beta vulgaris HOM05D003670 ORTHO05D004767 3.1e-154 548.9 380 70.5
Potri.005G095300 Populus trichocarpa HOM05D003670 ORTHO05D004767 3.1e-154 548.9 307 84.7
AL2G39700 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 2.0e-153 546.2 380 70.0
A07p27230 Brassica napus HOM05D003670 ORTHO05D004767 2.6e-153 545.8 378 72.5
A07p44350 Brassica napus HOM05D003670 ORTHO05D004767 2.6e-153 545.8 375 71.2
BraA07t30367Z Brassica rapa HOM05D003670 ORTHO05D004767 2.6e-153 545.8 378 72.5
BraA07t31943Z Brassica rapa HOM05D003670 ORTHO05D004767 2.6e-153 545.8 376 71.5
MSTRG.14566 Avicennia marina HOM05D003670 ORTHO05D004767 4.4e-153 545.0 381 70.6
Aqoxy1G01484 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 5.8e-153 544.7 380 70.3
AT1G79230 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 5.8e-153 544.7 382 69.9
Carub.0002s2610 Capsella rubella HOM05D003670 ORTHO05D004767 5.8e-153 544.7 383 71.3
BcaB02g07206 Brassica carinata HOM05D003670 ORTHO05D004767 9.9e-153 543.9 374 71.1
BolC6t38160H Brassica oleracea HOM05D003670 ORTHO05D004767 9.9e-153 543.9 378 72.2
Duzib213G1009 Durio zibethinus HOM05D003670 ORTHO05D004767 1.7e-152 543.1 386 72.3
Aa31LG4G1790 Aethionema arabicum HOM05D003670 ORTHO05D004767 8.4e-152 540.8 328 78.0
BcaC08g45368 Brassica carinata HOM05D003670 ORTHO05D004767 8.4e-152 540.8 378 72.0
C06p30000 Brassica napus HOM05D003670 ORTHO05D004767 8.4e-152 540.8 378 72.0
Oeu002796.1 Olea europaea HOM05D003670 ORTHO05D004767 1.1e-151 540.4 327 77.1
CARHR072860 Cardamine hirsuta HOM05D003670 ORTHO05D004767 1.4e-151 540.0 312 80.1
THA.LOC104812362 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 2.4e-151 539.3 387 69.3
Ah.10g033690 Amaranthus hybridus HOM05D003670 ORTHO05D004767 4.1e-151 538.5 405 66.9
arahy.Tifrunner.gnm1.ann1.YZ7E83 Arachis hypogaea HOM05D003670 ORTHO05D004767 1.2e-150 537.0 349 78.5
Carub.0001s1620 Capsella rubella HOM05D003670 ORTHO05D004767 2.1e-150 536.2 377 69.5
vmacro11699 Vaccinium macrocarpon HOM05D003670 ORTHO05D004767 1.7e-149 533.1 356 73.6
Sabra05G0078800 Salix brachista HOM05D003670 ORTHO05D004767 3.9e-149 531.9 350 74.9
THA.LOC104813608 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 6.6e-149 531.2 381 69.0
BolC5t30186H Brassica oleracea HOM05D003670 ORTHO05D004767 2.5e-148 529.3 376 69.4
Zm00001eb031400 Zea mays HOM05D003670 ORTHO05D004767 4.3e-148 528.5 317 79.5
Thhalv10007910m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 7.3e-148 527.7 310 79.4
Solyc02g078990.4 Solanum lycopersicum HOM05D003670 ORTHO05D004767 7.3e-148 527.7 339 74.3
BcaB05g25180 Brassica carinata HOM05D003670 ORTHO05D004767 9.6e-148 527.3 314 79.9
BcaC05g25571 Brassica carinata HOM05D003670 ORTHO05D004767 9.6e-148 527.3 376 69.4
Os12g0608600 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 1.2e-147 526.9 321 78.5
C05p14650 Brassica napus HOM05D003670 ORTHO05D004767 2.1e-147 526.2 376 69.1
Hund20101 Selenicereus undatus HOM05D003670 ORTHO05D004767 2.8e-147 525.8 380 69.5
unitig_578.g16333 Utricularia gibba HOM05D003670 ORTHO05D004767 6.2e-147 524.6 312 76.6
Sopen02g023800 Solanum pennellii HOM05D003670 ORTHO05D004767 1.1e-146 523.9 318 78.0
BcaB02g06624 Brassica carinata HOM05D003670 ORTHO05D004767 2.6e-145 519.2 378 68.5
A06p12380 Brassica napus HOM05D003670 ORTHO05D004767 3.8e-144 515.4 376 68.1
AL1G28600 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 6.4e-144 514.6 307 79.2
BraA06t24401Z Brassica rapa HOM05D003670 ORTHO05D004767 8.4e-144 514.2 376 68.4
ClCG05G009800 Citrullus lanatus HOM05D003670 ORTHO05D000003 8.4e-144 514.2 374 69.0
HPP92_013192 Vanilla planifolia HOM05D003670 ORTHO05D004767 8.4e-144 514.2 381 65.1
Sp1g14610 Schrenkiella parvula HOM05D003670 ORTHO05D004767 9.3e-143 510.8 312 76.6
Sc06g0002800 Simmondsia chinensis HOM05D003670 ORTHO05D004767 1.3e-141 506.9 348 72.4
Oeu043724.2 Olea europaea HOM05D003670 ORTHO05D004767 1.5e-140 503.4 326 73.3
Aa31LG7G1000 Aethionema arabicum HOM05D003670 ORTHO05D004767 4.3e-140 501.9 310 75.5
DCAR_019919 Daucus carota HOM05D003670 ORTHO05D004767 9.6e-140 500.7 380 66.8
MSTRG.7076 Avicennia marina HOM05D003670 ORTHO05D004767 1.3e-139 500.4 307 73.9
AT1G16460 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 3.1e-138 495.7 307 77.2
MELO3C019489.2 Cucumis melo HOM05D003670 ORTHO05D004767 9.9e-137 490.7 326 73.6
SGA_v2.0_scaffold186G40197 Striga asiatica HOM05D003670 ORTHO05D004767 9.9e-137 490.7 304 73.0
unitig_8.g4750 Utricularia gibba HOM05D003670 ORTHO05D004767 4.3e-132 475.3 376 62.8
Nitab4.5_0000388g0140 Nicotiana tabacum HOM05D003670 ORTHO05D004767 3.7e-131 472.2 327 72.2
SEGI_21826 Sequoiadendron giganteum HOM05D003670 ORTHO05D004767 1.8e-130 469.9 306 70.9
Lj2A15G76 Lonicera japonica HOM05D003670 ORTHO05D004767 3.1e-130 469.2 351 69.5
BcaC08g47490 Brassica carinata HOM05D003670 ORTHO05D004767 2.9e-128 462.6 378 64.3
Haze_07818 Corylus avellana HOM05D003670 ORTHO05D004767 3.5e-126 455.7 327 73.4
C06p53140 Brassica napus HOM05D003670 ORTHO05D004767 1.1e-124 450.7 271 78.2
BolC6t40330H Brassica oleracea HOM05D003670 ORTHO05D004767 1.1e-124 450.7 263 80.2
DCAR_016837 Daucus carota HOM05D003670 ORTHO05D004767 3.3e-124 449.1 294 68.7
QL04p088965 Quercus lobata HOM05D003670 ORTHO05D004767 2.8e-123 446.0 241 87.6
Os02g0167100 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 7.9e-118 427.9 296 62.8
Mapoly0058s0078 Marchantia polymorpha HOM05D003670 ORTHO05D004767 2.3e-117 426.4 318 62.3
SGA_v2.0_scaffold49G18190 Striga asiatica HOM05D003670 ORTHO05D004767 4.3e-116 422.2 265 77.0
Dinv19592 Davidia involucrata HOM05D003670 ORTHO05D004767 2.1e-110 403.3 255 78.8
Zm00001eb207410 Zea mays HOM05D003670 ORTHO05D004767 4.6e-110 402.1 329 57.1
AagrBONN_evm.TU.Sc2ySwM_344.5346 Anthoceros agrestis HOM05D003670 ORTHO05D004767 6.1e-110 401.7 316 59.8
CDE06G2006 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 6.3e-107 391.7 234 75.6
Pp3c9_17670 Physcomitrium patens HOM05D003670 ORTHO05D004767 2.6e-105 386.3 335 55.2
Rhsim05G0210500 Rhododendron simsii HOM05D003670 ORTHO05D004767 6.5e-104 381.7 233 79.4
SMO119G0061 Selaginella moellendorffii HOM05D003670 ORTHO05D004767 6.5e-104 381.7 293 61.4
HPP92_013209 Vanilla planifolia HOM05D003670 ORTHO05D004767 8.8e-101 371.3 381 52.0
Actinidia12766 Actinidia chinensis HOM05D003670 ORTHO05D004767 7.2e-95 351.7 236 74.6
CDE02G0962 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 7.2e-95 351.7 234 70.5
MD05G1228700 Malus domestica HOM05D003670 ORTHO05D004767 2.1e-94 350.1 196 84.7
FAN16G2550 Fragaria x ananassa HOM05D003670 ORTHO05D004767 3.6e-94 349.4 196 84.2
Cpa.g.sc34.17 Carica papaya HOM05D003670 ORTHO05D004767 1.4e-90 337.4 226 73.0
RcHm_v2.0_Chr5g0024731 Rosa chinensis HOM05D003670 ORTHO05D004767 3.2e-79 299.7 213 74.6
CBR_g17038 Chara braunii HOM05D003670 ORTHO05D004767 2.5e-71 273.5 351 42.5
A02p22680 Brassica napus HOM05D003670 ORTHO05D004767 3.6e-70 269.6 343 44.9
C02p36310 Brassica napus HOM05D003670 ORTHO05D004767 8.9e-69 265.0 219 62.1
Cre13.g607050 Chlamydomonas reinhardtii HOM05D003670 ORTHO05D004767 2.8e-67 260.0 323 44.0
MCO09G588 Micromonas commoda HOM05D003670 ORTHO05D004767 2.8e-67 260.0 296 47.0
PRCOL_00006295 Prasinoderma coloniale HOM05D003670 ORTHO05D004767 3.1e-66 256.5 306 44.8
Hma1.2p1_0269F.1_g107810 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 1.4e-53 214.5 153 72.5
MD05G1228600 Malus domestica HOM05D003670 ORTHO05D004767 2.4e-50 203.8 185 62.2
Aqoxy1G03000 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 9.2e-50 201.8 114 79.8
Cfa026738 Carpinus fangiana HOM05D003670 ORTHO05D004767 1.4e-42 177.9 350 35.1
BolC1t01654H Brassica oleracea HOM05D003670 ORTHO05D004767 4.0e-37 159.8 131 65.6
C03p82980 Brassica napus HOM05D003670 ORTHO05D004767 1.2e-36 158.3 94 83.0
BcaC01g00674 Brassica carinata HOM05D003670 ORTHO05D004767 2.6e-36 157.1 92 83.7
C01p17180 Brassica napus HOM05D003670 ORTHO05D004767 9.9e-36 155.2 131 64.1
BcaC04g18607 Brassica carinata HOM05D003670 ORTHO05D004767 2.9e-35 153.7 92 81.5
CAN.G891.1 Capsicum annuum HOM05D003670 ORTHO05D004767 6.4e-35 152.5 94 79.8
BolC9t58925H Brassica oleracea HOM05D003670 ORTHO05D004767 8.4e-35 152.1 131 62.6
Oeu010650.2 Olea europaea HOM05D003670 ORTHO05D004767 2.3e-32 144.1 98 77.6
Cpa.g.sc34.16 Carica papaya HOM05D003670 ORTHO05D004767 3.1e-29 133.7 75 82.7
Mapoly0032s0014 Marchantia polymorpha HOM05D003670 ORTHO05D031137 2.0e-28 131.0 343 29.2
Lsat_1_v5_gn_4_93521 Lactuca sativa HOM05D003670 ORTHO05D004767 8.4e-27 125.6 66 86.4
Oeu034061.1 Olea europaea HOM05D003670 ORTHO05D020012 1.2e-25 121.7 74 74.3
BolC7t42971H Brassica oleracea HOM05D003670 ORTHO05D004767 2.5e-23 114.0 133 50.4
BcaC06g34801 Brassica carinata HOM05D003670 ORTHO05D004767 5.6e-23 112.8 92 67.4
Solyc06g009850.3 Solanum lycopersicum HOM05D003670 ORTHO05D014971 4.8e-22 109.8 116 51.7
CDE06G0877 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 6.9e-21 105.9 64 78.1
QL04p088979 Quercus lobata HOM05D003670 ORTHO05D004767 1.3e-19 101.7 103 57.3
BcaC03g15876 Brassica carinata HOM05D003670 ORTHO05D020012 7.9e-17 92.4 61 68.9
BcaC05g28269 Brassica carinata HOM05D003670 ORTHO05D014971 1.9e-15 87.8 51 78.4
AagrBONN_evm.TU.Sc2ySwM_117.2139 Anthoceros agrestis HOM05D003670 ORTHO05D031137 9.6e-15 85.5 245 30.6
Sopen06g004510 Solanum pennellii HOM05D003670 ORTHO05D014971 1.5e-12 78.2 47 76.6
BcaC02g07679 Brassica carinata HOM05D003670 ORTHO05D014971 1.3e-11 75.1 42 81.0
Solyc06g009860.1 Solanum lycopersicum HOM05D003670 ORTHO05D020012 1.2e-09 68.6 46 65.2
Lsat_1_v5_gn_8_160501 Lactuca sativa HOM05D003670 ORTHO05D002209 2.5e-07 60.8 34 85.3
C06p40160 Brassica napus HOM05D003670 ORTHO05D020012 3.3e-07 60.5 30 83.3
BolC6t39098H Brassica oleracea HOM05D003670 ORTHO05D020012 3.3e-07 60.5 30 83.3
Hma1.2p1_1039F.1_g250810 Hydrangea macrophylla HOM05D001854 ORTHO05D001800 2.8e-06 57.4 39 66.7
Cre01.g008891 Chlamydomonas reinhardtii HOM05D003670 ORTHO05D031137 8.2e-06 55.8 58 39.7


User provided reference genes

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