Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G164732 Glycine max HOM05D000870 ORTHO05D026246 4.6e-47 191.0 108 100.0
Glyma.15G262400 Glycine max HOM05D000870 ORTHO05D000715 6.3e-28 127.5 97 71.1
Glyma.15G262300 Glycine max HOM05D000870 ORTHO05D000715 1.4e-22 109.8 97 61.9
Glyma.08G164800 Glycine max HOM05D000870 ORTHO05D000715 1.8e-22 109.4 97 63.9
Phvul.005G049300 Phaseolus vulgaris HOM05D000870 ORTHO05D000715 5.0e-17 91.3 97 55.7
VMungo1080G1185 Vigna mungo HOM05D000870 ORTHO05D000715 2.5e-16 89.0 97 55.7
Glyma.09G099500 Glycine max HOM05D000870 ORTHO05D000715 3.2e-16 88.6 82 57.3
Ca_05897_v3 Cicer arietinum L. HOM05D000870 ORTHO05D000715 4.7e-15 84.7 79 57.0
Cfa019385 Carpinus fangiana HOM05D000870 ORTHO05D000715 3.0e-14 82.0 79 57.0
arahy.Tifrunner.gnm1.ann1.DW8A2N Arachis hypogaea HOM05D000870 ORTHO05D000715 2.0e-13 79.3 89 56.2
VMungo1127G1213 Vigna mungo HOM05D000870 ORTHO05D000715 2.0e-13 79.3 73 57.5
Haze_07784 Corylus avellana HOM05D000870 ORTHO05D000715 3.3e-13 78.6 76 57.9
TPR.G27465 Trifolium pratense HOM05D000870 ORTHO05D000715 7.4e-13 77.4 81 58.0
Lj3g0020383 Lotus japonicus HOM05D000870 ORTHO05D000715 1.3e-12 76.6 101 51.5
arahy.Tifrunner.gnm1.ann1.JR9DQ2 Arachis hypogaea HOM05D000870 ORTHO05D000715 1.7e-12 76.3 104 47.1
Medtr8g046550 Medicago truncatula HOM05D000870 ORTHO05D000715 2.8e-12 75.5 77 55.8
Sabra10G0132200 Salix brachista HOM05D000870 ORTHO05D000715 2.8e-12 75.5 74 54.1
MSTRG.16095 Avicennia marina HOM05D000870 ORTHO05D000715 8.2e-12 73.9 79 53.2
CiPaw.11G059000 Carya illinoinensis HOM05D000870 ORTHO05D000715 8.2e-12 73.9 88 48.9
Medtr2g064405 Medicago truncatula HOM05D000870 ORTHO05D000715 1.4e-11 73.2 80 56.2
Nitab4.5_0008908g0010 Nicotiana tabacum HOM05D000870 ORTHO05D000715 1.4e-11 73.2 79 50.6
Nitab4.5_0008957g0050 Nicotiana tabacum HOM05D000870 ORTHO05D000715 1.4e-11 73.2 79 50.6
unitig_37.g12199 Utricularia gibba HOM05D000870 ORTHO05D000715 1.4e-11 73.2 82 46.3
SGA_v2.0_scaffold186G40190 Striga asiatica HOM05D000870 ORTHO05D000715 2.4e-11 72.4 77 53.2
Lalb_Chr25g0284471 Lupinus albus HOM05D000870 ORTHO05D000715 3.1e-11 72.0 71 59.2
Ca_23079_v3 Cicer arietinum L. HOM05D000870 ORTHO05D000715 4.1e-11 71.6 74 56.8
Lalb_Chr01g0015531 Lupinus albus HOM05D000870 ORTHO05D000715 7.0e-11 70.9 80 55.0
QL04p092619 Quercus lobata HOM05D000870 ORTHO05D000715 1.2e-10 70.1 79 48.1
QL04p092797 Quercus lobata HOM05D000870 ORTHO05D000715 1.2e-10 70.1 77 48.1
Actinidia12764 Actinidia chinensis HOM05D000870 ORTHO05D000715 1.6e-10 69.7 80 51.2
Nitab4.5_0003134g0040 Nicotiana tabacum HOM05D000870 ORTHO05D000715 1.6e-10 69.7 84 53.6
QL04p092548 Quercus lobata HOM05D000870 ORTHO05D000715 2.0e-10 69.3 77 48.1
Manes.03G080151 Manihot esculenta HOM05D000870 ORTHO05D000715 3.5e-10 68.6 71 54.9
Dinv42468 Davidia involucrata HOM05D000870 ORTHO05D000715 4.5e-10 68.2 82 50.0
QL04p091389 Quercus lobata HOM05D000870 ORTHO05D000715 4.5e-10 68.2 77 46.8
QL04p092499 Quercus lobata HOM05D000870 ORTHO05D000715 4.5e-10 68.2 77 46.8
Potri.010G172800 Populus trichocarpa HOM05D000870 ORTHO05D000715 5.9e-10 67.8 75 52.0
DCAR_009656 Daucus carota HOM05D000870 ORTHO05D000715 1.0e-09 67.0 80 52.5
MSTRG.7082 Avicennia marina HOM05D000870 ORTHO05D000715 1.3e-09 66.6 79 54.4
Prupe.4G131000 Prunus persica HOM05D000870 ORTHO05D000715 1.3e-09 66.6 77 53.2
Migut.M01512 Erythranthe guttata HOM05D000870 ORTHO05D000715 1.7e-09 66.2 75 53.3
QL04p091333 Quercus lobata HOM05D000870 ORTHO05D000715 1.7e-09 66.2 79 48.1
PGR031G3961 Punica granatum HOM05D000870 ORTHO05D000715 2.2e-09 65.9 76 50.0
Cc05_g16500 Coffea canephora HOM05D000870 ORTHO05D000715 2.9e-09 65.5 75 50.7
Atru.chr1.72 Acer truncatum HOM05D000870 ORTHO05D000715 3.8e-09 65.1 84 46.4
QL04p091406 Quercus lobata HOM05D000870 ORTHO05D000715 3.8e-09 65.1 73 52.1
PGSC0003DMG400011247 Solanum tuberosum HOM05D000870 ORTHO05D000715 3.8e-09 65.1 78 50.0
Duzib268G0052 Durio zibethinus HOM05D000870 ORTHO05D000715 5.0e-09 64.7 77 48.1
CSS0044030 Camellia sinensis var. sinensis HOM05D000870 ORTHO05D000715 6.5e-09 64.3 77 49.4
Solyc10g005500.3 Solanum lycopersicum HOM05D000870 ORTHO05D000715 6.5e-09 64.3 78 48.7
ATR1125G013 Amborella trichopoda HOM05D000870 ORTHO05D000715 8.5e-09 63.9 72 56.9
Nn7g38286 Nelumbo nucifera HOM05D000870 ORTHO05D000715 1.1e-08 63.5 71 53.5
Atru.chr1.73 Acer truncatum HOM05D000870 ORTHO05D000715 1.5e-08 63.2 82 48.8
Gohir.A01G098100 Gossypium hirsutum HOM05D000870 ORTHO05D000715 1.9e-08 62.8 78 50.0
QL04p092816 Quercus lobata HOM05D000870 ORTHO05D000715 1.9e-08 62.8 74 50.0
Sc08g0003330 Simmondsia chinensis HOM05D000870 ORTHO05D000715 2.5e-08 62.4 79 48.1
Sopen10g001480 Solanum pennellii HOM05D000870 ORTHO05D000715 2.5e-08 62.4 78 47.4
Sopen12g008130 Solanum pennellii HOM05D000870 ORTHO05D000715 3.2e-08 62.0 73 50.7
PGSC0003DMG400009656 Solanum tuberosum HOM05D000870 ORTHO05D000715 3.2e-08 62.0 74 48.6
Atru.chr1.74 Acer truncatum HOM05D000870 ORTHO05D000715 4.2e-08 61.6 83 47.0
Gorai.002G108200 Gossypium raimondii HOM05D000870 ORTHO05D000715 4.2e-08 61.6 78 48.7
HanXRQChr13g0408871 Helianthus annuus HOM05D000870 ORTHO05D000715 4.2e-08 61.6 75 50.7
THA.LOC104812379 Tarenaya hassleriana HOM05D000870 ORTHO05D000715 4.2e-08 61.6 74 50.0
TPR.G24717 Trifolium pratense HOM05D000870 ORTHO05D000715 4.2e-08 61.6 48 66.7
CANSAT56G1924 Cannabis sativa HOM05D000870 ORTHO05D000715 5.5e-08 61.2 87 49.4
CANSAT56G3326 Cannabis sativa HOM05D000870 ORTHO05D000715 5.5e-08 61.2 87 49.4
Gohir.D01G082800 Gossypium hirsutum HOM05D000870 ORTHO05D000715 5.5e-08 61.2 78 48.7
Cfa019386 Carpinus fangiana HOM05D000870 ORTHO05D000715 7.2e-08 60.8 80 47.5
Eucgr.F04469 Eucalyptus grandis HOM05D000870 ORTHO05D000715 7.2e-08 60.8 78 47.4
Sc08g0003310 Simmondsia chinensis HOM05D000870 ORTHO05D000715 7.2e-08 60.8 79 48.1
AUR62044375 Chenopodium quinoa HOM05D000870 ORTHO05D000715 9.4e-08 60.5 72 50.0
Ah.11g041140 Amaranthus hybridus HOM05D000870 ORTHO05D000715 1.2e-07 60.1 72 51.4
MD10G1211700 Malus domestica HOM05D000870 ORTHO05D000715 1.2e-07 60.1 97 43.3
Potri.010G172900 Populus trichocarpa HOM05D000870 ORTHO05D000715 1.2e-07 60.1 73 50.7
CiPaw.11G059200 Carya illinoinensis HOM05D000870 ORTHO05D000715 1.6e-07 59.7 86 47.7
Nitab4.5_0000388g0070 Nicotiana tabacum HOM05D000870 ORTHO05D000715 1.6e-07 59.7 72 48.6
Rhsim06G0243200 Rhododendron simsii HOM05D000870 ORTHO05D000715 1.6e-07 59.7 90 42.2
COL.COLO4_04573 Corchorus olitorius HOM05D000870 ORTHO05D000715 2.1e-07 59.3 80 48.8
Duzib268G0323 Durio zibethinus HOM05D000870 ORTHO05D000715 2.1e-07 59.3 73 47.9
QL04p091325 Quercus lobata HOM05D000870 ORTHO05D000715 2.1e-07 59.3 75 48.0
SalBow8G1376 Salvia bowleyana HOM05D000870 ORTHO05D000715 2.1e-07 59.3 98 42.9
SalBow8G4043 Salvia bowleyana HOM05D000870 ORTHO05D000715 2.1e-07 59.3 98 42.9
SalBow8G5136 Salvia bowleyana HOM05D000870 ORTHO05D000715 2.1e-07 59.3 98 42.9
COL.COLO4_04574 Corchorus olitorius HOM05D000870 ORTHO05D000715 3.6e-07 58.5 72 41.7
Lsat_1_v5_gn_7_69540 Lactuca sativa HOM05D000870 ORTHO05D000715 3.6e-07 58.5 80 47.5
Peaxi162Scf00520g00117 Petunia axillaris HOM05D000870 ORTHO05D000715 3.6e-07 58.5 79 46.8
QL04p091209 Quercus lobata HOM05D000870 ORTHO05D000715 3.6e-07 58.5 75 46.7
QL04p092347 Quercus lobata HOM05D000870 ORTHO05D000715 3.6e-07 58.5 75 46.7
QL04p092390 Quercus lobata HOM05D000870 ORTHO05D000715 4.7e-07 58.2 73 47.9
Atru.chr1.75 Acer truncatum HOM05D000870 ORTHO05D026246 6.1e-07 57.8 73 46.6
Thecc.07G187200 Theobroma cacao HOM05D000870 ORTHO05D000715 6.1e-07 57.8 81 45.7
MSTRG.13085 Avicennia marina HOM05D000870 ORTHO05D026246 1.0e-06 57.0 77 42.9
MBI18_g44003_MAGBIO Magnolia biondii HOM05D000870 ORTHO05D000715 1.0e-06 57.0 74 48.6
QL04p092431 Quercus lobata HOM05D000870 ORTHO05D000715 1.0e-06 57.0 75 45.3
Hund12028 Selenicereus undatus HOM05D000870 ORTHO05D000715 1.0e-06 57.0 83 47.0
CiPaw.11G059300 Carya illinoinensis HOM05D000870 ORTHO05D000715 1.4e-06 56.6 73 49.3
HanXRQChr03g0078131 Helianthus annuus HOM05D000870 ORTHO05D000715 1.4e-06 56.6 83 45.8
Prupe.4G131200 Prunus persica HOM05D000870 ORTHO05D000715 1.4e-06 56.6 73 41.1
TWI38G1510 Tripterygium wilfordii HOM05D000870 ORTHO05D000715 1.4e-06 56.6 81 44.4
GSVIVG01036746001 Vitis vinifera HOM05D000870 ORTHO05D000715 2.3e-06 55.8 88 39.8
MELO3C019632.2 Cucumis melo HOM05D000870 ORTHO05D000715 3.0e-06 55.5 72 47.2
CsaV3_6G013480 Cucumis sativus L. HOM05D000870 ORTHO05D000715 3.0e-06 55.5 72 47.2
TAR627G0727 Trochodendron aralioides HOM05D000870 ORTHO05D000715 3.0e-06 55.5 73 45.2
CSS0023067 Camellia sinensis var. sinensis HOM05D000870 ORTHO05D000715 4.0e-06 55.1 78 44.9
CSS0034585 Camellia sinensis var. sinensis HOM05D000870 ORTHO05D000715 4.0e-06 55.1 78 44.9
AUR62036868 Chenopodium quinoa HOM05D000870 ORTHO05D000715 4.0e-06 55.1 72 48.6
Nitab4.5_0011518g0030 Nicotiana tabacum HOM05D000870 ORTHO05D000715 4.0e-06 55.1 63 57.1
Peaxi162Scf00006g01613 Petunia axillaris HOM05D000870 ORTHO05D000715 4.0e-06 55.1 72 47.2
Sp1g14500 Schrenkiella parvula HOM05D000870 ORTHO05D000715 4.0e-06 55.1 80 42.5
MBI18_g25299_MAGBIO Magnolia biondii HOM05D000870 ORTHO05D000715 5.2e-06 54.7 74 45.9
QL04p091268 Quercus lobata HOM05D000870 ORTHO05D000715 5.2e-06 54.7 78 44.9
QL04p092404 Quercus lobata HOM05D000870 ORTHO05D000715 5.2e-06 54.7 78 44.9
Lsat_1_v5_gn_7_110860 Lactuca sativa HOM05D000870 ORTHO05D000715 6.7e-06 54.3 83 44.6
Sed0011288 Sechium edule HOM05D000870 ORTHO05D000715 8.8e-06 53.9 72 45.8


User provided reference genes

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