Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G158100 Glycine max HOM05D004722 ORTHO05D005453 4.5e-37 157.5 85 100.0
Glyma.15G268200 Glycine max HOM05D004722 ORTHO05D005453 9.3e-35 149.8 85 94.1
Phvul.005G042200 Phaseolus vulgaris HOM05D004722 ORTHO05D005453 5.5e-27 124.0 79 83.5
arahy.Tifrunner.gnm1.ann1.3B9L35 Arachis hypogaea HOM05D004722 ORTHO05D005453 2.3e-25 118.6 84 72.6
Psat1g129080 Pisum sativum HOM05D004722 ORTHO05D005453 5.6e-24 114.0 70 84.3
Lj3g0007026 Lotus japonicus HOM05D004722 ORTHO05D005453 9.6e-24 113.2 77 79.2
Medtr2g061780 Medicago truncatula HOM05D004722 ORTHO05D005453 1.6e-23 112.5 70 81.4
Ca_03203_v3 Cicer arietinum L. HOM05D004722 ORTHO05D005453 3.7e-23 111.3 76 75.0
TPR.G16145 Trifolium pratense HOM05D004722 ORTHO05D005453 6.2e-23 110.5 70 81.4
Lalb_Chr25g0283671 Lupinus albus HOM05D004722 ORTHO05D005453 7.6e-21 103.6 72 75.0
Lalb_Chr01g0014951 Lupinus albus HOM05D004722 ORTHO05D005453 2.1e-18 95.5 76 67.1
Manes.10G152300 Manihot esculenta HOM05D004722 ORTHO05D005453 2.7e-18 95.1 72 69.4
MD02G1319500 Malus domestica HOM05D004722 ORTHO05D005453 1.1e-16 89.7 70 71.4
COL.COLO4_35454 Corchorus olitorius HOM05D004722 ORTHO05D005453 1.5e-16 89.4 75 61.3
Duzib114G0602 Durio zibethinus HOM05D004722 ORTHO05D005453 4.3e-16 87.8 76 61.8
Prupe.2G002500 Prunus persica HOM05D004722 ORTHO05D005453 4.3e-16 87.8 70 65.7
TWI60G0560 Tripterygium wilfordii HOM05D004722 ORTHO05D005453 7.4e-16 87.0 82 57.3
RhsimUnG0154700 Rhododendron simsii HOM05D004722 ORTHO05D005453 1.3e-15 86.3 84 63.1
Atru.chr11.2706 Acer truncatum HOM05D004722 ORTHO05D005453 1.6e-15 85.9 73 64.4
Rhsim13G0228000 Rhododendron simsii HOM05D004722 ORTHO05D005453 1.6e-15 85.9 84 63.1
PGR102G1407 Punica granatum HOM05D004722 ORTHO05D005453 2.2e-15 85.5 81 61.7
TAR636G1609 Trochodendron aralioides HOM05D004722 ORTHO05D005453 2.2e-15 85.5 69 65.2
MD00G1055400 Malus domestica HOM05D004722 ORTHO05D005453 2.8e-15 85.1 73 64.4
Potri.009G024300 Populus trichocarpa HOM05D004722 ORTHO05D005453 6.3e-15 84.0 71 64.8
TAR636G0988 Trochodendron aralioides HOM05D004722 ORTHO05D005453 6.3e-15 84.0 69 63.8
vmacro13608 Vaccinium macrocarpon HOM05D004722 ORTHO05D005453 8.2e-15 83.6 84 54.8
CSS0019299 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 1.4e-14 82.8 72 66.7
Thecc.09G215900 Theobroma cacao HOM05D004722 ORTHO05D005453 1.4e-14 82.8 77 62.3
TAR633G0462 Trochodendron aralioides HOM05D004722 ORTHO05D005453 1.4e-14 82.8 71 64.8
Cpa.g.sc189.2 Carica papaya HOM05D004722 ORTHO05D005453 1.8e-14 82.4 69 63.8
FAN01G1424 Fragaria x ananassa HOM05D000082 ORTHO05D005453 1.8e-14 82.4 84 57.1
Sed0000285 Sechium edule HOM05D004722 ORTHO05D005453 1.8e-14 82.4 71 66.2
Nn7g35982 Nelumbo nucifera HOM05D004722 ORTHO05D005453 2.4e-14 82.0 89 56.2
Rhsim07G0049700 Rhododendron simsii HOM05D004722 ORTHO05D005453 2.4e-14 82.0 72 59.7
Aqoxy2G00098 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 3.1e-14 81.6 80 60.0
Aqoxy3G01856 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 3.1e-14 81.6 80 60.0
Ciclev10017204m.g Citrus clementina HOM05D004722 ORTHO05D005453 3.1e-14 81.6 79 62.0
Aa31LG1G19080 Aethionema arabicum HOM05D004722 ORTHO05D005453 5.3e-14 80.9 72 63.9
CSS0017159 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 5.3e-14 80.9 71 66.2
CSS0018564 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 5.3e-14 80.9 71 66.2
RcHm_v2.0_Chr1g0313231 Rosa chinensis HOM05D004722 ORTHO05D005453 5.3e-14 80.9 84 56.0
Ciclev10033110m.g Citrus clementina HOM05D004722 ORTHO05D005453 6.9e-14 80.5 70 65.7
Actinidia05843 Actinidia chinensis HOM05D004722 ORTHO05D005453 2.0e-13 79.0 66 68.2
Hma1.2p1_0541F.1_g174840 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 2.0e-13 79.0 73 65.8
Nn2g15722 Nelumbo nucifera HOM05D004722 ORTHO05D005453 2.0e-13 79.0 83 59.0
Potri.001G010600 Populus trichocarpa HOM05D004722 ORTHO05D005453 2.0e-13 79.0 77 55.8
BcaC02g11308 Brassica carinata HOM05D004722 ORTHO05D005453 2.6e-13 78.6 79 58.2
A05p13590 Brassica napus HOM05D004722 ORTHO05D005453 2.6e-13 78.6 79 58.2
C04p17690 Brassica napus HOM05D004722 ORTHO05D005453 2.6e-13 78.6 79 58.2
BolC4t23317H Brassica oleracea HOM05D004722 ORTHO05D005453 2.6e-13 78.6 79 58.2
BraA05t20296Z Brassica rapa HOM05D004722 ORTHO05D005453 2.6e-13 78.6 79 58.2
ClCG10G012700 Citrullus lanatus HOM05D004722 ORTHO05D005453 2.6e-13 78.6 73 58.9
HanXRQChr11g0344951 Helianthus annuus HOM05D004722 ORTHO05D005453 3.4e-13 78.2 84 54.8
GSVIVG01025254001 Vitis vinifera HOM05D004722 ORTHO05D005453 3.4e-13 78.2 68 64.7
Carub.0004s1325 Capsella rubella HOM05D004722 ORTHO05D005453 4.5e-13 77.8 76 59.2
DCAR_029591 Daucus carota HOM05D004722 ORTHO05D005453 4.5e-13 77.8 79 59.5
Sabra09G0015700 Salix brachista HOM05D004722 ORTHO05D005453 4.5e-13 77.8 70 64.3
Thecc.10G172000 Theobroma cacao HOM05D004722 ORTHO05D005453 5.9e-13 77.4 76 55.3
Cfa010708 Carpinus fangiana HOM05D004722 ORTHO05D005453 7.7e-13 77.0 69 63.8
Haze_03270 Corylus avellana HOM05D004722 ORTHO05D005453 1.0e-12 76.6 69 63.8
Eucgr.B03635 Eucalyptus grandis HOM05D004722 ORTHO05D005453 1.0e-12 76.6 75 60.0
Cc02_g26920 Coffea canephora HOM05D004722 ORTHO05D005453 1.7e-12 75.9 79 54.4
Thhalv10017532m.g Eutrema salsugineum HOM05D004722 ORTHO05D005453 2.2e-12 75.5 80 55.0
Hma1.2p1_1373F.1_g278710 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 2.9e-12 75.1 69 62.3
Hma1.2p1_2663F.1_g326415 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 2.9e-12 75.1 69 62.3
Lsat_1_v5_gn_1_68380 Lactuca sativa HOM05D004722 ORTHO05D005453 2.9e-12 75.1 71 62.0
Potri.001G230900 Populus trichocarpa HOM05D004722 ORTHO05D005453 2.9e-12 75.1 81 56.8
MELO3C023928.2 Cucumis melo HOM05D004722 ORTHO05D005453 5.0e-12 74.3 70 58.6
ECA236G3701 Erigeron canadensis HOM05D004722 ORTHO05D005453 5.0e-12 74.3 79 55.7
Eucgr.B02611 Eucalyptus grandis HOM05D004722 ORTHO05D005453 5.0e-12 74.3 71 60.6
CiPaw.13G035000 Carya illinoinensis HOM05D004722 ORTHO05D005453 8.5e-12 73.6 73 58.9
Sp4g14310 Schrenkiella parvula HOM05D004722 ORTHO05D005453 8.5e-12 73.6 76 57.9
THA.LOC104800946 Tarenaya hassleriana HOM05D004722 ORTHO05D005453 8.5e-12 73.6 77 57.1
AL4G27260 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 1.1e-11 73.2 76 55.3
AT1G05575 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 1.1e-11 73.2 80 55.0
Cc02_g26900 Coffea canephora HOM05D004722 ORTHO05D005453 1.1e-11 73.2 67 62.7
DCAR_027044 Daucus carota HOM05D004722 ORTHO05D005453 1.1e-11 73.2 62 69.4
SalBow4G0755 Salvia bowleyana HOM05D004722 ORTHO05D005453 1.1e-11 73.2 73 56.2
Sed0020970 Sechium edule HOM05D004722 ORTHO05D005453 1.4e-11 72.8 73 57.5
CARHR005060 Cardamine hirsuta HOM05D004722 ORTHO05D005453 1.9e-11 72.4 78 53.8
COL.COLO4_10444 Corchorus olitorius HOM05D004722 ORTHO05D005453 1.9e-11 72.4 81 56.8
DCAR_027045 Daucus carota HOM05D004722 ORTHO05D005453 1.9e-11 72.4 63 66.7
HanXRQChr15g0480671 Helianthus annuus HOM05D004722 ORTHO05D005453 1.9e-11 72.4 79 53.2
Peaxi162Scf00245g00096 Petunia axillaris HOM05D004722 ORTHO05D005453 2.5e-11 72.0 72 58.3
Potri.003G215300 Populus trichocarpa HOM05D004722 ORTHO05D005453 2.5e-11 72.0 69 58.0
PSO339G1234 Papaver somniferum HOM05D004722 ORTHO05D005453 3.2e-11 71.6 76 55.3
Sc06g0004360 Simmondsia chinensis HOM05D004722 ORTHO05D005453 3.2e-11 71.6 72 54.2
Sabra16G0138300 Salix brachista HOM05D004722 ORTHO05D005453 4.2e-11 71.2 72 59.7
PGR119G0776 Punica granatum HOM05D004722 ORTHO05D005453 5.5e-11 70.9 67 64.2
Migut.N01655 Erythranthe guttata HOM05D004722 ORTHO05D005453 7.2e-11 70.5 74 58.1
Gohir.A05G401550 Gossypium hirsutum HOM05D004722 ORTHO05D005453 9.4e-11 70.1 80 55.0
Gohir.D04G014200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 9.4e-11 70.1 80 55.0
A10p04290 Brassica napus HOM05D004722 ORTHO05D005453 1.2e-10 69.7 72 58.3
BraA10t42697Z Brassica rapa HOM05D004722 ORTHO05D005453 1.2e-10 69.7 72 58.3
CANSAT11G0834 Cannabis sativa HOM05D004722 ORTHO05D005453 1.2e-10 69.7 65 58.5
Gorai.012G016800 Gossypium raimondii HOM05D004722 ORTHO05D005453 1.2e-10 69.7 80 55.0
Atru.chr3.2176 Acer truncatum HOM05D004722 ORTHO05D005453 1.6e-10 69.3 59 64.4
AT2G31945 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 1.6e-10 69.3 72 55.6
BolC5t29171H Brassica oleracea HOM05D004722 ORTHO05D005453 1.6e-10 69.3 72 58.3
Oeu034890.1 Olea europaea HOM05D004722 ORTHO05D005453 1.6e-10 69.3 72 52.8
Carub.0001s0489 Capsella rubella HOM05D004722 ORTHO05D005453 2.1e-10 68.9 78 53.8
CAN.G129.50 Capsicum annuum HOM05D004722 ORTHO05D005453 2.1e-10 68.9 66 62.1
Gorai.013G005600 Gossypium raimondii HOM05D004722 ORTHO05D005453 2.1e-10 68.9 69 59.4
PGSC0003DMG400028988 Solanum tuberosum HOM05D004722 ORTHO05D005453 3.6e-10 68.2 72 59.7
Zm00001eb100700 Zea mays HOM05D004722 ORTHO05D005453 3.6e-10 68.2 79 57.0
Zm00001eb100710 Zea mays HOM05D004722 ORTHO05D005453 3.6e-10 68.2 79 57.0
AL1G15450 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 4.6e-10 67.8 73 56.2
BcaC05g24363 Brassica carinata HOM05D004722 ORTHO05D005453 6.1e-10 67.4 71 60.6
BraA10t42701Z Brassica rapa HOM05D000875 ORTHO05D000684 6.1e-10 67.4 69 60.9
Gohir.A13G005400 Gossypium hirsutum HOM05D004722 ORTHO05D005453 6.1e-10 67.4 81 54.3
HanXRQChr01g0021201 Helianthus annuus HOM05D004722 ORTHO05D005453 6.1e-10 67.4 62 61.3
ClCG09G003700 Citrullus lanatus HOM05D004722 ORTHO05D005453 7.9e-10 67.0 65 58.5
CSS0019909 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 1.0e-09 66.6 79 53.2
AL80U10030 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 1.4e-09 66.2 69 56.5
Gohir.A10G182200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 1.4e-09 66.2 79 53.2
Gohir.D13G005100 Gossypium hirsutum HOM05D004722 ORTHO05D005453 1.4e-09 66.2 64 57.8
MD03G1011900 Malus domestica HOM05D004722 ORTHO05D005453 1.4e-09 66.2 59 62.7
SalBow4G0008 Salvia bowleyana HOM05D004722 ORTHO05D005453 1.8e-09 65.9 68 54.4
Prupe.6G012500 Prunus persica HOM05D004722 ORTHO05D005453 2.3e-09 65.5 73 57.5
Sopen01g033290 Solanum pennellii HOM05D004722 ORTHO05D005453 2.3e-09 65.5 63 61.9
Sopen01g033320 Solanum pennellii HOM05D004722 ORTHO05D005453 2.3e-09 65.5 77 53.2
PGSC0003DMG400028984 Solanum tuberosum HOM05D004722 ORTHO05D005453 2.3e-09 65.5 71 57.7
CSS0030536 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 3.0e-09 65.1 73 57.5
Os02g0774200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 3.0e-09 65.1 76 52.6
Solyc01g073720.2 Solanum lycopersicum HOM05D004722 ORTHO05D005453 3.0e-09 65.1 63 60.3
Zm00001eb193270 Zea mays HOM05D004722 ORTHO05D005453 3.0e-09 65.1 80 52.5
BcaB02g06840 Brassica carinata HOM05D004722 ORTHO05D005453 3.9e-09 64.7 72 59.7
Zm00001eb373570 Zea mays HOM05D004722 ORTHO05D005453 6.7e-09 63.9 79 57.0
MD11G1015000 Malus domestica HOM05D004722 ORTHO05D005453 8.8e-09 63.5 70 54.3
RcHm_v2.0_Chr5g0081201 Rosa chinensis HOM05D004722 ORTHO05D005453 8.8e-09 63.5 61 60.7
Atru.chr3.2177 Acer truncatum HOM05D004722 ORTHO05D005453 1.5e-08 62.8 72 52.8
Cpa.g.sc119.96 Carica papaya HOM05D004722 ORTHO05D005453 1.9e-08 62.4 63 57.1
Nitab4.5_0000468g0090 Nicotiana tabacum HOM05D004722 ORTHO05D005453 1.9e-08 62.4 66 54.5
Gorai.011G212200 Gossypium raimondii HOM05D004722 ORTHO05D005453 3.3e-08 61.6 79 49.4
Ah.06g190970 Amaranthus hybridus HOM05D004722 ORTHO05D005453 4.3e-08 61.2 67 53.7
Sed0018607 Sechium edule HOM05D004722 ORTHO05D005453 4.3e-08 61.2 70 52.9
Peaxi162Scf00402g00810 Petunia axillaris HOM05D004722 ORTHO05D005453 5.7e-08 60.8 75 52.0
FvH4_3g44500 Fragaria vesca HOM05D004722 ORTHO05D005453 7.4e-08 60.5 61 59.0
FAN11G3093 Fragaria x ananassa HOM05D004722 ORTHO05D005453 7.4e-08 60.5 61 59.0
EL10Ac4g09615 Beta vulgaris HOM05D004722 ORTHO05D005453 9.7e-08 60.1 67 53.7
FAN10G0002 Fragaria x ananassa HOM05D040482 ORTHO05D005453 1.3e-07 59.7 63 54.0
Oeu032785.1 Olea europaea HOM05D004722 ORTHO05D005453 1.3e-07 59.7 73 52.1
DCAR_023306 Daucus carota HOM05D004722 ORTHO05D005453 2.2e-07 58.9 63 58.7
Os09g0446700 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 2.8e-07 58.5 71 54.9
EL10Ac4g09614 Beta vulgaris HOM05D004722 ORTHO05D005453 4.8e-07 57.8 71 49.3
Nitab4.5_0009236g0010 Nicotiana tabacum HOM05D004722 ORTHO05D005453 4.8e-07 57.8 75 50.7
Os06g0207200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 6.3e-07 57.4 82 48.8
FvH4_7g00010 Fragaria vesca HOM05D040482 ORTHO05D005453 1.1e-06 56.6 50 64.0
EL10Ac4g09616 Beta vulgaris HOM05D004722 ORTHO05D005453 3.1e-06 55.1 67 49.3


User provided reference genes

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