Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G151500 Glycine max HOM05D006442 ORTHO05D007980 6.0e-73 277.3 133 100.0
VMungo1080G0583 Vigna mungo HOM05D006442 ORTHO05D007980 6.5e-67 257.3 133 91.0
Glyma.15G271700 Glycine max HOM05D006442 ORTHO05D007980 3.2e-66 255.0 133 90.2
Phvul.005G037200 Phaseolus vulgaris HOM05D006442 ORTHO05D007980 2.3e-64 248.8 133 87.2
Lj3g0007274 Lotus japonicus HOM05D006442 ORTHO05D007980 6.7e-64 247.3 133 85.7
VMungo1080G0430 Vigna mungo HOM05D006442 ORTHO05D007980 6.7e-64 247.3 129 86.8
arahy.Tifrunner.gnm1.ann1.9R1925 Arachis hypogaea HOM05D006442 ORTHO05D007980 1.9e-63 245.7 133 85.7
arahy.Tifrunner.gnm1.ann1.A55RA3 Arachis hypogaea HOM05D006442 ORTHO05D007980 1.9e-63 245.7 133 85.7
Haze_03245 Corylus avellana HOM05D006442 ORTHO05D007980 3.3e-63 245.0 130 86.2
Cfa010728 Carpinus fangiana HOM05D006442 ORTHO05D007980 5.7e-63 244.2 130 84.6
Dinv43911 Davidia involucrata HOM05D006442 ORTHO05D007980 5.7e-63 244.2 133 83.5
Medtr3g027090 Medicago truncatula HOM05D006442 ORTHO05D007980 5.7e-63 244.2 133 85.7
Prupe.2G007200 Prunus persica HOM05D006442 ORTHO05D007980 1.6e-62 242.7 130 83.8
TPR.G12183 Trifolium pratense HOM05D006442 ORTHO05D007980 6.3e-62 240.7 133 84.2
Hma1.2p1_0010F.1_g007050 Hydrangea macrophylla HOM05D006442 ORTHO05D007980 1.1e-61 240.0 130 83.8
Eucgr.G03402 Eucalyptus grandis HOM05D006442 ORTHO05D007980 3.1e-61 238.4 133 83.5
Phvul.005G038700 Phaseolus vulgaris HOM05D006442 ORTHO05D007980 3.1e-61 238.4 129 85.3
PGR042G3140 Punica granatum HOM05D006442 ORTHO05D007980 4.1e-61 238.0 133 80.5
CSS0016496 Camellia sinensis var. sinensis HOM05D006442 ORTHO05D007980 9.0e-61 236.9 133 82.0
Manes.10G148300 Manihot esculenta HOM05D006442 ORTHO05D007980 9.0e-61 236.9 133 82.0
GSVIVG01032037001 Vitis vinifera HOM05D006442 ORTHO05D007980 1.2e-60 236.5 133 82.7
Actinidia20688 Actinidia chinensis HOM05D006442 ORTHO05D007980 1.5e-60 236.1 129 82.2
Actinidia21568 Actinidia chinensis HOM05D006442 ORTHO05D007980 2.6e-60 235.3 129 81.4
Rhsim07G0053100 Rhododendron simsii HOM05D006442 ORTHO05D007980 2.6e-60 235.3 133 80.5
CSS0031684 Camellia sinensis var. sinensis HOM05D006442 ORTHO05D007980 3.4e-60 235.0 133 81.2
CiPaw.12G060500 Carya illinoinensis HOM05D006442 ORTHO05D007980 5.9e-60 234.2 129 82.2
Cc02_g27370 Coffea canephora HOM05D006442 ORTHO05D007980 5.9e-60 234.2 130 81.5
FvH4_7g00510 Fragaria vesca HOM05D006442 ORTHO05D007980 7.7e-60 233.8 130 80.8
FAN06G2479 Fragaria x ananassa HOM05D006442 ORTHO05D007980 7.7e-60 233.8 130 80.8
FAN10G1890 Fragaria x ananassa HOM05D006442 ORTHO05D007980 7.7e-60 233.8 130 80.8
MD07G1004900 Malus domestica HOM05D006442 ORTHO05D007980 1.0e-59 233.4 130 80.0
TWI09G1159 Tripterygium wilfordii HOM05D006442 ORTHO05D007980 1.0e-59 233.4 130 80.8
Cc02_g27340 Coffea canephora HOM05D006442 ORTHO05D007980 1.3e-59 233.0 130 80.8
FAN03G1462 Fragaria x ananassa HOM05D006442 ORTHO05D007980 1.7e-59 232.6 130 80.0
RcHm_v2.0_Chr1g0314301 Rosa chinensis HOM05D006442 ORTHO05D007980 2.9e-59 231.9 130 80.0
PGSC0003DMG400026375 Solanum tuberosum HOM05D006442 ORTHO05D007980 2.9e-59 231.9 133 79.7
TAR633G2790 Trochodendron aralioides HOM05D006442 ORTHO05D007980 1.1e-58 229.9 133 78.9
CAN.G1110.8 Capsicum annuum HOM05D006442 ORTHO05D007980 2.5e-58 228.8 129 79.1
Peaxi162Scf00045g00327 Petunia axillaris HOM05D006442 ORTHO05D007980 2.5e-58 228.8 129 77.5
Psat5g207000 Pisum sativum HOM05D006442 ORTHO05D007980 3.2e-58 228.4 133 80.5
Ciclev10033058m.g Citrus clementina HOM05D006442 ORTHO05D007980 4.2e-58 228.0 130 80.8
Sc14g0005190 Simmondsia chinensis HOM05D006442 ORTHO05D007980 5.5e-58 227.6 131 77.1
Solyc10g037980.2 Solanum lycopersicum HOM05D006442 ORTHO05D007980 5.5e-58 227.6 129 79.1
Lalb_Chr25g0283271 Lupinus albus HOM05D006442 ORTHO05D007980 9.4e-58 226.9 133 77.4
Duzib133G0004 Durio zibethinus HOM05D006442 ORTHO05D007980 1.2e-57 226.5 135 76.3
Lsat_1_v5_gn_8_7620 Lactuca sativa HOM05D006442 ORTHO05D007980 1.2e-57 226.5 133 78.2
Potri.001G225500 Populus trichocarpa HOM05D006442 ORTHO05D007980 2.1e-57 225.7 130 78.5
Oeu064276.1 Olea europaea HOM05D006442 ORTHO05D007980 2.7e-57 225.3 133 74.4
Ah.16g101020 Amaranthus hybridus HOM05D006442 ORTHO05D007980 3.6e-57 224.9 131 78.6
SalBow5G2051 Salvia bowleyana HOM05D006442 ORTHO05D007980 3.6e-57 224.9 131 75.6
Sopen10g011600 Solanum pennellii HOM05D006442 ORTHO05D007980 6.1e-57 224.2 129 78.3
Atru.chr11.2670 Acer truncatum HOM05D006442 ORTHO05D007980 1.4e-56 223.0 130 77.7
QL04p004786 Quercus lobata HOM05D006442 ORTHO05D007980 1.4e-56 223.0 175 63.4
Sabra16G0134100 Salix brachista HOM05D006442 ORTHO05D007980 1.4e-56 223.0 130 77.7
Gohir.D09G099100 Gossypium hirsutum HOM05D006442 ORTHO05D007980 1.8e-56 222.6 135 76.3
Gorai.006G116100 Gossypium raimondii HOM05D006442 ORTHO05D007980 1.8e-56 222.6 135 76.3
MSTRG.28085 Avicennia marina HOM05D006442 ORTHO05D007980 3.0e-56 221.9 130 76.2
Gohir.A09G099700 Gossypium hirsutum HOM05D006442 ORTHO05D007980 5.1e-56 221.1 135 74.8
DCAR_006304 Daucus carota HOM05D006442 ORTHO05D007980 8.8e-56 220.3 130 76.9
Nitab4.5_0002012g0020 Nicotiana tabacum HOM05D006442 ORTHO05D007980 8.8e-56 220.3 129 76.0
Nn7g36056 Nelumbo nucifera HOM05D006442 ORTHO05D007980 1.1e-55 219.9 133 74.4
Aqoxy1G00188 Aquilegia oxysepala HOM05D006442 ORTHO05D007980 3.3e-55 218.4 133 75.2
Sed0019847 Sechium edule HOM05D006442 ORTHO05D007980 4.3e-55 218.0 131 76.3
AUR62023154 Chenopodium quinoa HOM05D006442 ORTHO05D007980 7.4e-55 217.2 129 76.0
ECA248G1263 Erigeron canadensis HOM05D006442 ORTHO05D007980 1.7e-54 216.1 133 74.4
COL.COLO4_23906 Corchorus olitorius HOM05D006442 ORTHO05D007980 2.2e-54 215.7 137 74.5
Migut.N01489 Erythranthe guttata HOM05D006442 ORTHO05D007980 2.2e-54 215.7 130 75.4
HanXRQChr01g0018511 Helianthus annuus HOM05D006442 ORTHO05D007980 2.2e-54 215.7 133 74.4
Nn2g15582 Nelumbo nucifera HOM05D006442 ORTHO05D007980 2.2e-54 215.7 127 76.4
CANSAT01G1452 Cannabis sativa HOM05D006442 ORTHO05D007980 3.7e-54 214.9 130 76.9
AUR62009476 Chenopodium quinoa HOM05D006442 ORTHO05D007980 3.7e-54 214.9 129 76.0
Thecc.01G414800 Theobroma cacao HOM05D006442 ORTHO05D007980 8.2e-54 213.8 132 76.5
CDE07G0477 Ceratophyllum demersum HOM05D006442 ORTHO05D007980 2.4e-53 212.2 131 71.8
CAN.G1076.12 Capsicum annuum HOM05D006442 ORTHO05D007980 3.1e-53 211.8 129 76.0
Oeu013593.2 Olea europaea HOM05D006442 ORTHO05D007980 1.2e-52 209.9 133 69.2
SGA_v2.0_scaffold4G02243 Striga asiatica HOM05D006442 ORTHO05D007980 1.0e-51 206.8 130 72.3
EL10Ac2g04436 Beta vulgaris HOM05D006442 ORTHO05D007980 1.3e-51 206.5 131 69.5
SGA_v2.0_scaffold10G05439 Striga asiatica HOM05D006442 ORTHO05D007980 1.7e-51 206.1 130 70.8
Ca_27853_v3 Cicer arietinum L. HOM05D006442 ORTHO05D007980 8.5e-51 203.8 227 49.8
AUR62009477 Chenopodium quinoa HOM05D006442 ORTHO05D007980 6.1e-49 197.6 131 67.2
PSO384G2221 Papaver somniferum HOM05D006442 ORTHO05D007980 6.1e-49 197.6 130 69.2
AUR62023155 Chenopodium quinoa HOM05D006442 ORTHO05D007980 1.0e-48 196.8 131 67.9
unitig_22.g5766 Utricularia gibba HOM05D006442 ORTHO05D007980 1.8e-48 196.1 131 68.7
PSO339G0425 Papaver somniferum HOM05D006442 ORTHO05D007980 3.9e-48 194.9 130 67.7
THA.LOC104823024 Tarenaya hassleriana HOM05D006442 ORTHO05D007980 3.9e-48 194.9 130 67.7
Glyma.08G152300 Glycine max HOM05D006442 ORTHO05D007980 1.5e-47 193.0 133 71.4
Atru.chr11.2672 Acer truncatum HOM05D006442 ORTHO05D007980 2.6e-47 192.2 126 73.0
BcaC06g31744 Brassica carinata HOM05D006442 ORTHO05D007980 2.6e-47 192.2 131 65.6
BcaC02g10802 Brassica carinata HOM05D006442 ORTHO05D007980 7.4e-47 190.7 131 64.1
C04p24990 Brassica napus HOM05D006442 ORTHO05D007980 7.4e-47 190.7 131 64.1
BolC4t23999H Brassica oleracea HOM05D006442 ORTHO05D007980 7.4e-47 190.7 131 64.1
A06p48230 Brassica napus HOM05D006442 ORTHO05D007980 2.8e-46 188.7 131 62.6
BraA06t27691Z Brassica rapa HOM05D006442 ORTHO05D007980 2.8e-46 188.7 131 62.6
AL8G18110 Arabidopsis lyrata HOM05D006442 ORTHO05D007980 1.1e-45 186.8 131 64.9
Thhalv10003289m.g Eutrema salsugineum HOM05D006442 ORTHO05D007980 1.8e-45 186.0 131 64.1
Sp2g07550 Schrenkiella parvula HOM05D006442 ORTHO05D007980 3.1e-45 185.3 130 63.8
CARHR181310 Cardamine hirsuta HOM05D006442 ORTHO05D007980 1.2e-44 183.3 131 62.6
Carub.0008s0607 Capsella rubella HOM05D006442 ORTHO05D007980 2.0e-44 182.6 131 61.8
AT5G42850 Arabidopsis thaliana HOM05D006442 ORTHO05D007980 3.8e-43 178.3 131 61.1
vmacro13638 Vaccinium macrocarpon HOM05D006442 ORTHO05D007980 1.6e-41 172.9 156 57.1
SEGI_10267 Sequoiadendron giganteum HOM05D006442 ORTHO05D007980 8.8e-40 167.2 129 55.8
Aa31LG8G5740 Aethionema arabicum HOM05D000097 ORTHO05D000041 4.4e-39 164.9 132 56.8
ATR0605G011 Amborella trichopoda HOM05D006442 ORTHO05D007980 1.3e-38 163.3 129 55.0
HPP92_018950 Vanilla planifolia HOM05D006442 ORTHO05D007980 1.3e-38 163.3 126 59.5
Os06g0320000 Oryza sativa ssp. japonica HOM05D006442 ORTHO05D007980 2.8e-38 162.2 135 54.8
Zm00001eb381670 Zea mays HOM05D006442 ORTHO05D007980 2.4e-37 159.1 133 56.4
SMO244G0064 Selaginella moellendorffii HOM05D006442 ORTHO05D007980 7.0e-37 157.5 129 54.3
CsaV3_3G032370 Cucumis sativus L. HOM05D006442 ORTHO05D007980 9.1e-37 157.1 85 83.5
MBI01_g15755_MAGBIO Magnolia biondii HOM05D006442 ORTHO05D007980 1.6e-36 156.4 85 81.2
AagrBONN_evm.TU.Sc2ySwM_117.1593 Anthoceros agrestis HOM05D006442 ORTHO05D007980 2.9e-35 152.1 129 55.0
CAN.G37.7 Capsicum annuum HOM05D006442 ORTHO05D007980 1.1e-34 150.2 102 65.7
Mapoly0028s0130 Marchantia polymorpha HOM05D006442 ORTHO05D007980 1.6e-33 146.4 130 51.5
Pp3c1_3150 Physcomitrium patens HOM05D006442 ORTHO05D007980 1.7e-30 136.3 129 48.8
Nitab4.5_0004606g0020 Nicotiana tabacum HOM05D006442 ORTHO05D007980 1.1e-29 133.7 79 73.4
ClCG10G012580 Citrullus lanatus HOM05D002156 ORTHO05D002328 1.1e-26 123.6 75 73.3
CBR_g40140 Chara braunii HOM05D006442 ORTHO05D007980 1.4e-24 116.7 130 49.2
MD02G1317000 Malus domestica HOM05D006442 ORTHO05D007980 8.8e-24 114.0 64 75.0
MD01G1062200 Malus domestica HOM05D006442 ORTHO05D007980 1.3e-19 100.1 72 66.7
Aa31LG8G5750 Aethionema arabicum HOM05D006442 ORTHO05D007980 4.2e-18 95.1 126 40.5
CAN.G290.22 Capsicum annuum HOM05D006442 ORTHO05D007980 6.8e-16 87.8 56 62.5
CsaV3_3G032380 Cucumis sativus L. HOM05D002156 ORTHO05D002328 2.8e-14 82.4 48 79.2
MELO3C023952.2 Cucumis melo HOM05D002156 ORTHO05D002328 1.1e-13 80.5 48 75.0
AL8G12830 Arabidopsis lyrata HOM05D006442 ORTHO05D007980 3.9e-11 72.0 53 60.4
Cre07.g315100 Chlamydomonas reinhardtii HOM05D006442 ORTHO05D007980 2.5e-10 69.3 88 42.0
AL5G40550 Arabidopsis lyrata HOM05D006442 ORTHO05D007980 5.6e-10 68.2 47 63.8
MD00G1052400 Malus domestica HOM05D006442 ORTHO05D007980 1.2e-09 67.0 43 67.4


User provided reference genes

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