Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G151000 Glycine max HOM05D000092 ORTHO05D011915 1.5e-50 202.6 103 100.0
Glyma.13G260600 Glycine max HOM05D000092 ORTHO05D000042 2.3e-27 125.6 95 66.3
Medtr2g072020 Medicago truncatula HOM05D000092 ORTHO05D000042 1.6e-17 92.8 102 47.1
Glyma.15G246100 Glycine max HOM05D000092 ORTHO05D000042 1.4e-16 89.7 72 58.3
Glyma.15G246800 Glycine max HOM05D000092 ORTHO05D000042 1.4e-16 89.7 72 58.3
Medtr2g072150 Medicago truncatula HOM05D000092 ORTHO05D000042 3.1e-16 88.6 102 44.1
Medtr2g072030 Medicago truncatula HOM05D000092 ORTHO05D000042 5.3e-16 87.8 102 45.1
TPR.G29674 Trifolium pratense HOM05D000092 ORTHO05D000042 5.3e-16 87.8 102 46.1
Glyma.15G247400 Glycine max HOM05D000092 ORTHO05D000042 1.2e-15 86.7 80 52.5
Glyma.15G247600 Glycine max HOM05D000092 ORTHO05D000042 1.5e-15 86.3 80 51.2
TPR.G26607 Trifolium pratense HOM05D000092 ORTHO05D000042 2.6e-15 85.5 101 45.5
TPR.G26631 Trifolium pratense HOM05D000092 ORTHO05D000042 3.4e-15 85.1 102 44.1
Medtr2g072110 Medicago truncatula HOM05D000092 ORTHO05D000042 2.9e-14 82.0 102 41.2
Medtr2g072080 Medicago truncatula HOM05D000092 ORTHO05D000042 4.9e-14 81.3 102 43.1
TPR.G847 Trifolium pratense HOM05D000092 ORTHO05D000042 4.9e-14 81.3 105 41.9
Medtr2g072820 Medicago truncatula HOM05D000092 ORTHO05D000042 1.4e-13 79.7 102 40.2
Medtr2g071870 Medicago truncatula HOM05D000092 ORTHO05D000042 4.2e-13 78.2 84 44.0
Medtr2g071940 Medicago truncatula HOM05D000092 ORTHO05D000042 4.2e-13 78.2 84 44.0
Medtr2g072090 Medicago truncatula HOM05D000092 ORTHO05D000042 4.2e-13 78.2 84 44.0
Medtr2g071850 Medicago truncatula HOM05D000092 ORTHO05D000042 2.1e-12 75.9 84 41.7
Medtr2g071960 Medicago truncatula HOM05D000092 ORTHO05D000042 2.1e-12 75.9 84 41.7
Medtr2g075970 Medicago truncatula HOM05D000092 ORTHO05D000042 3.5e-12 75.1 94 38.3
Medtr2g071820 Medicago truncatula HOM05D000092 ORTHO05D000042 7.8e-12 73.9 87 42.5
Lalb_Chr20g0109001 Lupinus albus HOM05D000092 ORTHO05D000042 3.0e-11 72.0 84 40.5
Medtr2g071890 Medicago truncatula HOM05D000092 ORTHO05D000042 3.9e-11 71.6 87 40.2
Ciclev10003533m.g Citrus clementina HOM05D000092 ORTHO05D000042 6.6e-11 70.9 92 37.0
Ciclev10000136m.g Citrus clementina HOM05D000092 ORTHO05D000042 3.3e-10 68.6 92 39.1
Lalb_Chr20g0108991 Lupinus albus HOM05D000092 ORTHO05D000042 3.3e-10 68.6 84 38.1
Medtr2g071900 Medicago truncatula HOM05D000092 ORTHO05D000042 7.3e-10 67.4 98 36.7
Ciclev10003696m.g Citrus clementina HOM05D000092 ORTHO05D000042 1.6e-09 66.2 92 32.6
Medtr2g071980 Medicago truncatula HOM05D000092 ORTHO05D000042 2.8e-09 65.5 84 38.1
Ciclev10000198m.g Citrus clementina HOM05D000092 ORTHO05D000042 3.6e-09 65.1 93 37.6
Ciclev10000151m.g Citrus clementina HOM05D000092 ORTHO05D000042 8.1e-09 63.9 91 34.1
Ciclev10003564m.g Citrus clementina HOM05D000092 ORTHO05D000042 8.1e-09 63.9 92 31.5
Ciclev10004100m.g Citrus clementina HOM05D000092 ORTHO05D000042 8.1e-09 63.9 91 34.1
CsaV3_2G033580 Cucumis sativus L. HOM05D000092 ORTHO05D000042 1.1e-08 63.5 90 36.7
Ciclev10000327m.g Citrus clementina HOM05D000092 ORTHO05D000042 5.3e-08 61.2 94 35.1
Ciclev10003228m.g Citrus clementina HOM05D000092 ORTHO05D000042 5.3e-08 61.2 94 35.1
Ciclev10013993m.g Citrus clementina HOM05D000092 ORTHO05D000042 5.3e-08 61.2 91 33.0
Ciclev10000228m.g Citrus clementina HOM05D000092 ORTHO05D000042 6.9e-08 60.8 87 33.3
Ciclev10003477m.g Citrus clementina HOM05D000092 ORTHO05D000042 6.9e-08 60.8 94 35.1
Ciclev10013995m.g Citrus clementina HOM05D000092 ORTHO05D000042 6.9e-08 60.8 87 33.3
FAN18G2769 Fragaria x ananassa HOM05D005885 ORTHO05D000042 6.9e-08 60.8 92 34.8
Ciclev10003410m.g Citrus clementina HOM05D000092 ORTHO05D000042 9.0e-08 60.5 92 29.3
Atru.chr1.2689_Atru.chr1.2685 Acer truncatum HOM05D000092 ORTHO05D000042 1.2e-07 60.1 74 37.8
Ca_03400_v3 Cicer arietinum L. HOM05D000092 ORTHO05D000042 1.5e-07 59.7 72 44.4
Ciclev10000221m.g Citrus clementina HOM05D000092 ORTHO05D000042 2.6e-07 58.9 91 31.9
Glyma.18G226850 Glycine max HOM05D000092 ORTHO05D000042 2.6e-07 58.9 82 30.5
RcHm_v2.0_Chr4g0397921 Rosa chinensis HOM05D000092 ORTHO05D000042 2.6e-07 58.9 89 31.5
Cpa.g.c28428.2 Carica papaya HOM05D000092 ORTHO05D000042 3.4e-07 58.5 68 38.2
Ciclev10000323m.g Citrus clementina HOM05D000092 ORTHO05D000042 4.5e-07 58.2 94 33.0
Ciclev10003132m.g Citrus clementina HOM05D000092 ORTHO05D000042 4.5e-07 58.2 94 33.0
Sabra13G0019600 Salix brachista HOM05D000092 ORTHO05D000042 4.5e-07 58.2 102 31.4
Glyma.18G226250 Glycine max HOM05D000092 ORTHO05D000042 5.8e-07 57.8 82 31.7
Glyma.18G226500 Glycine max HOM05D000092 ORTHO05D000042 5.8e-07 57.8 82 29.3
Psat5g221880 Pisum sativum HOM05D000092 ORTHO05D000042 5.8e-07 57.8 82 37.8
Ciclev10003179m.g Citrus clementina HOM05D000092 ORTHO05D000042 7.6e-07 57.4 76 32.9
MELO3C004321.2 Cucumis melo HOM05D000092 ORTHO05D000042 7.6e-07 57.4 90 33.3
FvH4_7g31140 Fragaria vesca HOM05D000092 ORTHO05D000042 9.9e-07 57.0 84 34.5
GSVIVG01023563001 Vitis vinifera HOM05D000092 ORTHO05D000042 9.9e-07 57.0 102 32.4
arahy.Tifrunner.gnm1.ann1.BPD95K Arachis hypogaea HOM05D000092 ORTHO05D000042 1.3e-06 56.6 89 36.0
arahy.Tifrunner.gnm1.ann1.TXZ93S Arachis hypogaea HOM05D000092 ORTHO05D000042 1.3e-06 56.6 89 36.0
Cpa.g.c40114 Carica papaya HOM05D000092 ORTHO05D011915 1.3e-06 56.6 67 37.3
FvH4_6g53580 Fragaria vesca HOM05D000092 ORTHO05D000042 1.3e-06 56.6 69 39.1
FAN14G0094 Fragaria x ananassa HOM05D000092 ORTHO05D000042 1.3e-06 56.6 69 39.1
Psat5g221920 Pisum sativum HOM05D000092 ORTHO05D000042 1.3e-06 56.6 82 35.4
RcHm_v2.0_Chr4g0398211 Rosa chinensis HOM05D000092 ORTHO05D000042 1.3e-06 56.6 92 28.3
Ca_07526_v3 Cicer arietinum L. HOM05D000092 ORTHO05D000042 1.7e-06 56.2 84 32.1
Ca_29921_v3 Cicer arietinum L. HOM05D000092 ORTHO05D000042 1.7e-06 56.2 84 32.1
Ciclev10013518m.g Citrus clementina HOM05D000092 ORTHO05D000042 2.2e-06 55.8 94 31.9
COL.COLO4_20550 Corchorus olitorius HOM05D000092 ORTHO05D000042 2.2e-06 55.8 86 31.4
Potri.005G041101 Populus trichocarpa HOM05D000092 ORTHO05D000042 2.2e-06 55.8 79 34.2
Ciclev10000123m.g Citrus clementina HOM05D000092 ORTHO05D000042 2.9e-06 55.5 87 34.5
ECA247G0302 Erigeron canadensis HOM05D000092 ORTHO05D000042 2.9e-06 55.5 85 34.1
FAN06G3901 Fragaria x ananassa HOM05D000092 ORTHO05D000042 2.9e-06 55.5 84 34.5
FAN06G5058 Fragaria x ananassa HOM05D000092 ORTHO05D000042 2.9e-06 55.5 84 34.5
Ciclev10000055m.g Citrus clementina HOM05D000092 ORTHO05D000042 3.8e-06 55.1 65 41.5
Ciclev10000331m.g Citrus clementina HOM05D000092 ORTHO05D000042 3.8e-06 55.1 79 35.4
FAN21G2588 Fragaria x ananassa HOM05D000092 ORTHO05D000042 3.8e-06 55.1 67 37.3
Potri.005G042400 Populus trichocarpa HOM05D000092 ORTHO05D000042 3.8e-06 55.1 79 32.9
Prupe.2G029200 Prunus persica HOM05D000092 ORTHO05D000042 3.8e-06 55.1 95 29.5
RcHm_v2.0_Chr4g0397841 Rosa chinensis HOM05D000092 ORTHO05D000042 3.8e-06 55.1 87 27.6
Ciclev10003894m.g Citrus clementina HOM05D000092 ORTHO05D000042 4.9e-06 54.7 93 33.3
FvH4_1g18121 Fragaria vesca HOM05D000092 ORTHO05D000042 4.9e-06 54.7 102 30.4
Lalb_Chr03g0031971 Lupinus albus HOM05D000092 ORTHO05D000042 4.9e-06 54.7 102 30.4
Phvul.008G072100 Phaseolus vulgaris HOM05D000092 ORTHO05D000042 4.9e-06 54.7 94 28.7
RcHm_v2.0_Chr4g0397781 Rosa chinensis HOM05D000092 ORTHO05D000042 4.9e-06 54.7 69 34.8
Ciclev10013355m.g Citrus clementina HOM05D000092 ORTHO05D000042 6.4e-06 54.3 82 31.7
TPR.G24935 Trifolium pratense HOM05D000092 ORTHO05D000042 6.4e-06 54.3 67 35.8
TWI38G1108 Tripterygium wilfordii HOM05D000092 ORTHO05D000042 6.4e-06 54.3 102 28.4
GSVIVG01029290001 Vitis vinifera HOM05D000092 ORTHO05D000042 6.4e-06 54.3 86 33.7
Ciclev10014088m.g Citrus clementina HOM05D000092 ORTHO05D000042 8.4e-06 53.9 90 30.0
Ciclev10017820m.g Citrus clementina HOM05D000092 ORTHO05D000042 8.4e-06 53.9 90 31.1
RhsimUnG0029200 Rhododendron simsii HOM05D000092 ORTHO05D000042 8.4e-06 53.9 92 34.8


User provided reference genes

Program Settings