Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G148700 Glycine max HOM05D000435 ORTHO05D213021 6.7e-63 243.8 121 100.0
Glyma.01G154400 Glycine max HOM05D000435 ORTHO05D000430 1.1e-20 103.6 59 89.8
Glyma.11G090200 Glycine max HOM05D000435 ORTHO05D000430 1.9e-20 102.8 59 89.8
VMungo1215G2926 Vigna mungo HOM05D000435 ORTHO05D000430 1.5e-17 93.2 59 79.7
Lalb_Chr05g0215061 Lupinus albus HOM05D000435 ORTHO05D000430 4.3e-17 91.7 58 79.3
Phvul.002G121200 Phaseolus vulgaris HOM05D000435 ORTHO05D000430 4.3e-17 91.7 59 79.7
Lj2g0002848 Lotus japonicus HOM05D000435 ORTHO05D000430 3.6e-16 88.6 63 69.8
Lalb_Chr16g0380341 Lupinus albus HOM05D000435 ORTHO05D000430 4.7e-16 88.2 62 71.0
Lalb_Chr09g0324981 Lupinus albus HOM05D000435 ORTHO05D000430 1.1e-15 87.0 62 69.4
arahy.Tifrunner.gnm1.ann1.A0EMFP Arachis hypogaea HOM05D000435 ORTHO05D000430 2.3e-15 85.9 66 68.2
arahy.Tifrunner.gnm1.ann1.NJU12A Arachis hypogaea HOM05D000435 ORTHO05D000430 2.3e-15 85.9 66 68.2
Medtr5g025470 Medicago truncatula HOM05D000435 ORTHO05D000430 2.6e-14 82.4 65 67.7
TPR.G8994 Trifolium pratense HOM05D000435 ORTHO05D000430 2.6e-14 82.4 59 76.3
Dinv37425 Davidia involucrata HOM05D000435 ORTHO05D000430 5.8e-14 81.3 81 55.6
GSVIVG01036869001 Vitis vinifera HOM05D000435 ORTHO05D000430 2.9e-13 79.0 59 66.1
Ca_25035_v3 Cicer arietinum L. HOM05D000435 ORTHO05D000430 3.7e-13 78.6 58 74.1
Potri.003G046800 Populus trichocarpa HOM05D000435 ORTHO05D000430 8.3e-13 77.4 59 64.4
AUR62030428 Chenopodium quinoa HOM05D000435 ORTHO05D000430 1.9e-12 76.3 70 57.1
Manes.15G183300 Manihot esculenta HOM05D000435 ORTHO05D000430 2.4e-12 75.9 57 63.2
EL10Ac5g12574 Beta vulgaris HOM05D000435 ORTHO05D000430 4.1e-12 75.1 70 55.7
CAN.G930.10 Capsicum annuum HOM05D000435 ORTHO05D000430 4.1e-12 75.1 56 64.3
Manes.17G002900 Manihot esculenta HOM05D000435 ORTHO05D000430 5.4e-12 74.7 57 59.6
Peaxi162Scf00193g00724 Petunia axillaris HOM05D000435 ORTHO05D000430 5.4e-12 74.7 65 56.9
AUR62010471 Chenopodium quinoa HOM05D000435 ORTHO05D000430 7.1e-12 74.3 70 55.7
CiPaw.12G054300 Carya illinoinensis HOM05D000435 ORTHO05D000430 9.2e-12 73.9 66 56.1
Potri.004G236500 Populus trichocarpa HOM05D000435 ORTHO05D000430 9.2e-12 73.9 57 64.9
CiPaw.11G075800 Carya illinoinensis HOM05D000435 ORTHO05D000430 1.2e-11 73.6 58 60.3
Solyc08g075430.3 Solanum lycopersicum HOM05D000435 ORTHO05D000430 1.2e-11 73.6 56 64.3
Dinv41807 Davidia involucrata HOM05D000435 ORTHO05D000430 1.6e-11 73.2 65 55.4
CSS0020197 Camellia sinensis var. sinensis HOM05D000435 ORTHO05D000430 4.6e-11 71.6 57 59.6
Hma1.2p1_0211F.1_g089880 Hydrangea macrophylla HOM05D000435 ORTHO05D000430 4.6e-11 71.6 73 54.8
Nn1g09340 Nelumbo nucifera HOM05D000435 ORTHO05D000430 4.6e-11 71.6 62 59.7
Nitab4.5_0013109g0010 Nicotiana tabacum HOM05D000435 ORTHO05D000430 6.0e-11 71.2 60 58.3
Sabra03G0019400 Salix brachista HOM05D000435 ORTHO05D000430 7.8e-11 70.9 60 55.0
PGSC0003DMG400001967 Solanum tuberosum HOM05D000435 ORTHO05D000430 7.8e-11 70.9 67 52.2
Nitab4.5_0000030g0450 Nicotiana tabacum HOM05D000435 ORTHO05D000430 1.0e-10 70.5 60 58.3
Sabra01G0180700 Salix brachista HOM05D000435 ORTHO05D000430 1.0e-10 70.5 57 61.4
CSS0013180 Camellia sinensis var. sinensis HOM05D000435 ORTHO05D000430 1.3e-10 70.1 65 55.4
Sopen08g024060 Solanum pennellii HOM05D000435 ORTHO05D000430 1.7e-10 69.7 67 52.2
Atru.chr8.2630 Acer truncatum HOM05D000435 ORTHO05D037895 2.3e-10 69.3 57 59.6
Actinidia18168 Actinidia chinensis HOM05D000435 ORTHO05D000430 3.0e-10 68.9 57 59.6
Cc08_g05640 Coffea canephora HOM05D000435 ORTHO05D000430 3.0e-10 68.9 57 61.4
Glyma.16G110100 Glycine max HOM05D000435 ORTHO05D000430 3.0e-10 68.9 76 51.3
Nn7g37390 Nelumbo nucifera HOM05D000435 ORTHO05D000430 3.0e-10 68.9 62 56.5
Cfa012291 Carpinus fangiana HOM05D000435 ORTHO05D000430 3.9e-10 68.6 56 57.1
Duzib205G1136 Durio zibethinus HOM05D000435 ORTHO05D000430 3.9e-10 68.6 59 57.6
PGSC0003DMG400018479 Solanum tuberosum HOM05D000435 ORTHO05D000430 5.1e-10 68.2 56 58.9
Nitab4.5_0001175g0170 Nicotiana tabacum HOM05D000435 ORTHO05D000430 8.6e-10 67.4 56 60.7
Phvul.003G278800 Phaseolus vulgaris HOM05D000435 ORTHO05D000430 8.6e-10 67.4 57 63.2
QL12p004141 Quercus lobata HOM05D000435 ORTHO05D000430 8.6e-10 67.4 56 62.5
CAN.G884.11 Capsicum annuum HOM05D000435 ORTHO05D000430 1.1e-09 67.0 56 57.1
Nitab4.5_0006410g0010 Nicotiana tabacum HOM05D000435 ORTHO05D000430 1.1e-09 67.0 56 60.7
TAR636G1064 Trochodendron aralioides HOM05D000435 ORTHO05D000430 1.1e-09 67.0 81 46.9
Actinidia14733 Actinidia chinensis HOM05D000435 ORTHO05D000430 1.5e-09 66.6 57 57.9
COL.COLO4_11283 Corchorus olitorius HOM05D000435 ORTHO05D000430 1.9e-09 66.2 58 55.2
Lj8A1G38 Lonicera japonica HOM05D000435 ORTHO05D000430 1.9e-09 66.2 65 49.2
Lj8A343G23 Lonicera japonica HOM05D000435 ORTHO05D000430 1.9e-09 66.2 65 49.2
CsaV3_4G007160 Cucumis sativus L. HOM05D000435 ORTHO05D000430 3.3e-09 65.5 58 58.6
Psat2g146080 Pisum sativum HOM05D000435 ORTHO05D000430 4.3e-09 65.1 58 60.3
Hund11021 Selenicereus undatus HOM05D000435 ORTHO05D000430 4.3e-09 65.1 72 51.4
Haze_08437 Corylus avellana HOM05D000435 ORTHO05D000430 5.6e-09 64.7 56 55.4
Rhsim07G0139900 Rhododendron simsii HOM05D000435 ORTHO05D000430 5.6e-09 64.7 57 52.6
vmacro14241 Vaccinium macrocarpon HOM05D000435 ORTHO05D000430 5.6e-09 64.7 57 56.1
MELO3C016221.2 Cucumis melo HOM05D000435 ORTHO05D000430 7.3e-09 64.3 58 56.9
Prupe.1G353300 Prunus persica HOM05D000435 ORTHO05D000430 9.5e-09 63.9 61 57.4
Glyma.16G076900 Glycine max HOM05D000435 ORTHO05D000430 1.2e-08 63.5 62 59.7
Gohir.A08G149600 Gossypium hirsutum HOM05D000435 ORTHO05D000430 1.2e-08 63.5 59 52.5
ClCG07G011080 Citrullus lanatus HOM05D000435 ORTHO05D000430 1.6e-08 63.2 57 56.1
Sed0026019 Sechium edule HOM05D000435 ORTHO05D000430 1.6e-08 63.2 57 56.1
Thecc.03G318800 Theobroma cacao HOM05D000435 ORTHO05D000430 1.6e-08 63.2 59 54.2
Actinidia01253 Actinidia chinensis HOM05D000435 ORTHO05D000430 2.1e-08 62.8 53 58.5
Cpa.g.sc90.33 Carica papaya HOM05D000435 ORTHO05D000430 2.8e-08 62.4 59 49.2
Gorai.004G178100 Gossypium raimondii HOM05D000435 ORTHO05D000430 3.6e-08 62.0 59 50.8
Duzib068G1279 Durio zibethinus HOM05D000435 ORTHO05D000430 4.7e-08 61.6 59 52.5
Actinidia32788 Actinidia chinensis HOM05D000435 ORTHO05D000430 8.1e-08 60.8 53 56.6
Eucgr.D02559 Eucalyptus grandis HOM05D000435 ORTHO05D000430 8.1e-08 60.8 55 54.5
VMungo0251G0897 Vigna mungo HOM05D000435 ORTHO05D000430 1.1e-07 60.5 48 70.8
TWI31G0662 Tripterygium wilfordii HOM05D000435 ORTHO05D000430 1.4e-07 60.1 57 56.1
MSTRG.11864 Avicennia marina HOM05D000435 ORTHO05D000430 2.3e-07 59.3 65 44.6
Lsat_1_v5_gn_3_20200 Lactuca sativa HOM05D000435 ORTHO05D000430 3.1e-07 58.9 56 51.8
PGR031G1850 Punica granatum HOM05D000435 ORTHO05D000430 3.1e-07 58.9 55 47.3
TWI75G1019 Tripterygium wilfordii HOM05D000435 ORTHO05D000430 4.0e-07 58.5 57 54.4
ECA246G3535 Erigeron canadensis HOM05D000435 ORTHO05D000430 5.2e-07 58.2 57 49.1
Gohir.D08G170600 Gossypium hirsutum HOM05D000435 ORTHO05D000430 8.9e-07 57.4 59 50.8
Oeu015541.1 Olea europaea HOM05D000435 ORTHO05D000430 8.9e-07 57.4 56 50.0
TAR629G2005 Trochodendron aralioides HOM05D000435 ORTHO05D000430 8.9e-07 57.4 83 41.0
TWI79G1012 Tripterygium wilfordii HOM05D000435 ORTHO05D000430 1.2e-06 57.0 50 56.0
MSTRG.1759 Avicennia marina HOM05D000435 ORTHO05D000430 1.5e-06 56.6 52 48.1
MD08G1001300 Malus domestica HOM05D000435 ORTHO05D000430 1.5e-06 56.6 64 54.7
Gohir.A12G201900 Gossypium hirsutum HOM05D000435 ORTHO05D000430 2.6e-06 55.8 59 49.2
Gohir.D12G204600 Gossypium hirsutum HOM05D000435 ORTHO05D000430 2.6e-06 55.8 59 49.2
Gorai.008G219500 Gossypium raimondii HOM05D000435 ORTHO05D000430 2.6e-06 55.8 59 49.2
MSTRG.25742 Avicennia marina HOM05D000435 ORTHO05D000430 4.4e-06 55.1 56 44.6
Ciclev10011273m.g Citrus clementina HOM05D000435 ORTHO05D000430 5.8e-06 54.7 59 50.8
CAN.G930.14 Capsicum annuum HOM05D000435 ORTHO05D000430 7.6e-06 54.3 43 60.5
HanXRQChr06g0173501 Helianthus annuus HOM05D000435 ORTHO05D000430 7.6e-06 54.3 57 47.4
BcaB07g32824 Brassica carinata HOM05D000435 ORTHO05D000430 9.9e-06 53.9 59 49.2


User provided reference genes

Program Settings