Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G144367 Glycine max HOM05D004023 ORTHO05D004681 2.0e-52 208.8 102 100.0
Glyma.13G110200 Glycine max HOM05D004023 ORTHO05D004681 1.7e-43 179.1 110 84.5
Glyma.17G049500 Glycine max HOM05D004023 ORTHO05D004681 3.6e-33 144.8 86 83.7
Phvul.003G131100 Phaseolus vulgaris HOM05D004023 ORTHO05D004681 4.7e-25 117.9 101 59.4
arahy.Tifrunner.gnm1.ann1.XHC94G Arachis hypogaea HOM05D004023 ORTHO05D004681 6.8e-24 114.0 98 61.2
arahy.Tifrunner.gnm1.ann1.KDYD97 Arachis hypogaea HOM05D004023 ORTHO05D004681 2.0e-23 112.5 98 61.2
Lalb_Chr12g0200121 Lupinus albus HOM05D004023 ORTHO05D004681 3.6e-17 91.7 71 64.8
VMungo1309G2832 Vigna mungo HOM05D004023 ORTHO05D004681 8.0e-17 90.5 93 53.8
Glyma.15G177500 Glycine max HOM05D004023 ORTHO05D004681 1.0e-16 90.1 89 55.1
Phvul.009G227400 Phaseolus vulgaris HOM05D004023 ORTHO05D004681 1.4e-16 89.7 99 52.5
Glyma.09G069500 Glycine max HOM05D004023 ORTHO05D004681 2.3e-16 89.0 91 53.8
Lj6g0013866 Lotus japonicus HOM05D004023 ORTHO05D004681 6.8e-16 87.4 95 48.4
VMungo1215G3036 Vigna mungo HOM05D000651 ORTHO05D003435 6.8e-16 87.4 92 54.3
Atru.chr7.1700 Acer truncatum HOM05D004023 ORTHO05D004681 8.9e-16 87.0 103 47.6
CiPaw.03G206900 Carya illinoinensis HOM05D004023 ORTHO05D004681 1.2e-15 86.7 77 55.8
CANSAT56G0673 Cannabis sativa HOM05D004023 ORTHO05D004681 1.5e-15 86.3 99 47.5
Dinv42390 Davidia involucrata HOM05D004023 ORTHO05D004681 5.8e-15 84.3 86 48.8
Ca_23416_v3 Cicer arietinum L. HOM05D004023 ORTHO05D004681 9.8e-15 83.6 83 55.4
Lalb_Chr08g0232581 Lupinus albus HOM05D004023 ORTHO05D004681 1.3e-14 83.2 76 59.2
MD02G1091000 Malus domestica HOM05D004023 ORTHO05D004681 1.3e-14 83.2 85 50.6
Cfa002993 Carpinus fangiana HOM05D004023 ORTHO05D004681 1.7e-14 82.8 86 51.2
MD15G1217100 Malus domestica HOM05D004023 ORTHO05D004681 2.2e-14 82.4 85 49.4
TWI34G0375 Tripterygium wilfordii HOM05D004023 ORTHO05D004681 2.2e-14 82.4 78 55.1
Ciclev10009135m.g Citrus clementina HOM05D004023 ORTHO05D004681 2.9e-14 82.0 85 55.3
Haze_26009 Corylus avellana HOM05D004023 ORTHO05D004681 2.9e-14 82.0 86 50.0
CSS0006992 Camellia sinensis var. sinensis HOM05D004023 ORTHO05D004681 4.9e-14 81.3 85 49.4
CSS0007502 Camellia sinensis var. sinensis HOM05D004023 ORTHO05D004681 4.9e-14 81.3 85 49.4
CSS0019806 Camellia sinensis var. sinensis HOM05D004023 ORTHO05D004681 4.9e-14 81.3 85 49.4
Potri.006G142100 Populus trichocarpa HOM05D004023 ORTHO05D004681 4.9e-14 81.3 89 50.6
Duzib168G1033 Durio zibethinus HOM05D004023 ORTHO05D004681 8.3e-14 80.5 84 51.2
CSS0047726 Camellia sinensis var. sinensis HOM05D004023 ORTHO05D004681 1.4e-13 79.7 78 50.0
Manes.03G040200 Manihot esculenta HOM05D004023 ORTHO05D004681 1.8e-13 79.3 86 46.5
Psat1g134240 Pisum sativum HOM05D004023 ORTHO05D004681 2.4e-13 79.0 99 49.5
AT2G06025 Arabidopsis thaliana HOM05D004023 ORTHO05D004681 3.2e-13 78.6 85 50.6
TPR.G28584 Trifolium pratense HOM05D004023 ORTHO05D004681 5.4e-13 77.8 88 55.7
CSS0012197 Camellia sinensis var. sinensis HOM05D004023 ORTHO05D004681 7.0e-13 77.4 85 48.2
Carub.0003s2716 Capsella rubella HOM05D004023 ORTHO05D004681 9.2e-13 77.0 89 47.2
GSVIVG01015086001 Vitis vinifera HOM05D004023 ORTHO05D004681 1.2e-12 76.6 87 44.8
CARHR103710 Cardamine hirsuta HOM05D004023 ORTHO05D004681 1.6e-12 76.3 85 45.9
Thecc.09G077600 Theobroma cacao HOM05D004023 ORTHO05D004681 1.6e-12 76.3 88 47.7
arahy.Tifrunner.gnm1.ann1.KW18SN Arachis hypogaea HOM05D004023 ORTHO05D004681 2.7e-12 75.5 91 46.2
TWI63G1612 Tripterygium wilfordii HOM05D004023 ORTHO05D004681 2.7e-12 75.5 86 46.5
Actinidia29930 Actinidia chinensis HOM05D004023 ORTHO05D004681 3.5e-12 75.1 78 50.0
AL3G43670 Arabidopsis lyrata HOM05D004023 ORTHO05D004681 3.5e-12 75.1 85 47.1
BcaC06g35952 Brassica carinata HOM05D004023 ORTHO05D004681 3.5e-12 75.1 85 48.2
A07p06280 Brassica napus HOM05D004023 ORTHO05D004681 3.5e-12 75.1 85 48.2
C07p09330 Brassica napus HOM05D004023 ORTHO05D004681 3.5e-12 75.1 85 48.2
BolC7t41351H Brassica oleracea HOM05D004023 ORTHO05D004681 3.5e-12 75.1 85 48.2
Sabra06G0111200 Salix brachista HOM05D004023 ORTHO05D004681 3.5e-12 75.1 91 45.1
BcaB06g26883 Brassica carinata HOM05D004023 ORTHO05D004681 6.0e-12 74.3 85 48.2
Nitab4.5_0005767g0010 Nicotiana tabacum HOM05D004023 ORTHO05D004681 6.0e-12 74.3 93 46.2
Sp3g24610 Schrenkiella parvula HOM05D004023 ORTHO05D004681 6.0e-12 74.3 87 49.4
Medtr2g041620 Medicago truncatula HOM05D004023 ORTHO05D004681 1.0e-11 73.6 97 44.3
Gohir.A06G076200 Gossypium hirsutum HOM05D004023 ORTHO05D004681 1.3e-11 73.2 92 45.7
Gohir.D06G075200 Gossypium hirsutum HOM05D004023 ORTHO05D004681 1.3e-11 73.2 92 45.7
Gorai.010G088100 Gossypium raimondii HOM05D004023 ORTHO05D004681 1.3e-11 73.2 92 45.7
TAR383G0448 Trochodendron aralioides HOM05D004023 ORTHO05D004681 1.7e-11 72.8 99 44.4
Aqoxy7G01044 Aquilegia oxysepala HOM05D004023 ORTHO05D004681 2.3e-11 72.4 58 62.1
FvH4_1g08620 Fragaria vesca HOM05D004023 ORTHO05D004681 3.9e-11 71.6 76 50.0
FAN19G1115 Fragaria x ananassa HOM05D004023 ORTHO05D004681 3.9e-11 71.6 76 50.0
FAN23G1893 Fragaria x ananassa HOM05D004023 ORTHO05D004681 3.9e-11 71.6 76 50.0
FAN26G1792 Fragaria x ananassa HOM05D004023 ORTHO05D004681 3.9e-11 71.6 76 50.0
FAN26G3281 Fragaria x ananassa HOM05D004023 ORTHO05D004681 3.9e-11 71.6 76 50.0
Prupe.7G199400 Prunus persica HOM05D004023 ORTHO05D004681 5.0e-11 71.2 86 46.5
RcHm_v2.0_Chr2g0094881 Rosa chinensis HOM05D004023 ORTHO05D004681 5.0e-11 71.2 75 50.7
SEGI_14760 Sequoiadendron giganteum HOM05D004023 ORTHO05D004681 5.0e-11 71.2 73 50.7
FAN28G2268 Fragaria x ananassa HOM05D004023 ORTHO05D004681 6.6e-11 70.9 70 51.4
BraA07t28423Z Brassica rapa HOM05D004023 ORTHO05D004681 8.6e-11 70.5 85 45.9
QL11p000695 Quercus lobata HOM05D004023 ORTHO05D004681 8.6e-11 70.5 84 50.0
THA.LOC104826588 Tarenaya hassleriana HOM05D004023 ORTHO05D004681 1.1e-10 70.1 95 41.1
Ah.03g147260 Amaranthus hybridus HOM05D004023 ORTHO05D004681 1.5e-10 69.7 71 49.3
Nitab4.5_0000024g0190 Nicotiana tabacum HOM05D004023 ORTHO05D004681 1.9e-10 69.3 93 43.0
Cc06_g12120 Coffea canephora HOM05D004023 ORTHO05D004681 3.3e-10 68.6 87 43.7
CsaV3_1G041000 Cucumis sativus L. HOM05D004023 ORTHO05D004681 3.3e-10 68.6 87 43.7
AUR62017796 Chenopodium quinoa HOM05D004023 ORTHO05D004681 4.3e-10 68.2 62 54.8
EL10Ac6g15385 Beta vulgaris HOM05D004023 ORTHO05D004681 5.6e-10 67.8 65 53.8
MELO3C015518.2 Cucumis melo HOM05D004023 ORTHO05D004681 5.6e-10 67.8 87 44.8
MBI13_g41748_MAGBIO Magnolia biondii HOM05D004023 ORTHO05D004681 9.5e-10 67.0 95 47.4
Eucgr.J00649 Eucalyptus grandis HOM05D004023 ORTHO05D004681 1.2e-09 66.6 78 46.2
Aa31sc133G50 Aethionema arabicum HOM05D004023 ORTHO05D004681 1.6e-09 66.2 85 43.5
AUR62003487 Chenopodium quinoa HOM05D004023 ORTHO05D004681 2.1e-09 65.9 93 43.0
PGR119G0815 Punica granatum HOM05D004023 ORTHO05D004681 2.1e-09 65.9 66 51.5
PGR142G0045 Punica granatum HOM05D004023 ORTHO05D004681 2.1e-09 65.9 50 62.0
EL10Ac8g19063 Beta vulgaris HOM05D004023 ORTHO05D004681 2.8e-09 65.5 68 47.1
ClCG03G015110 Citrullus lanatus HOM05D004023 ORTHO05D004681 2.8e-09 65.5 87 44.8
Eucgr.C00816 Eucalyptus grandis HOM05D004023 ORTHO05D004681 2.8e-09 65.5 86 46.5
Peaxi162Scf00554g00920 Petunia axillaris HOM05D004023 ORTHO05D004681 2.8e-09 65.5 85 44.7
Thhalv10002632m.g Eutrema salsugineum HOM05D004023 ORTHO05D004681 3.6e-09 65.1 99 40.4
Oeu013106.1 Olea europaea HOM05D004023 ORTHO05D004681 6.2e-09 64.3 76 44.7
Sed0007208 Sechium edule HOM05D004023 ORTHO05D004681 8.0e-09 63.9 77 44.2
PGSC0003DMG400027761 Solanum tuberosum HOM05D004023 ORTHO05D004681 1.1e-08 63.5 93 40.9
MBI13_g42818_MAGBIO Magnolia biondii HOM05D004023 ORTHO05D004681 1.4e-08 63.2 75 42.7
SalBow6G6388 Salvia bowleyana HOM05D004023 ORTHO05D004681 2.3e-08 62.4 61 55.7
Hund12723 Selenicereus undatus HOM05D004023 ORTHO05D004681 2.3e-08 62.4 66 45.5
TAR369G0443 Trochodendron aralioides HOM05D004023 ORTHO05D004681 2.3e-08 62.4 96 46.9
HPP92_013291 Vanilla planifolia HOM05D004023 ORTHO05D004681 2.3e-08 62.4 49 61.2
GSVIVG01037415001 Vitis vinifera HOM05D004023 ORTHO05D004681 2.3e-08 62.4 62 53.2
MSTRG.18474 Avicennia marina HOM05D004023 ORTHO05D004681 3.1e-08 62.0 70 50.0
DCAR_031922 Daucus carota HOM05D004023 ORTHO05D004681 3.1e-08 62.0 96 39.6
ECA240G3187 Erigeron canadensis HOM05D004023 ORTHO05D004681 3.1e-08 62.0 60 56.7
Lj4A912T25 Lonicera japonica HOM05D004023 ORTHO05D004681 3.1e-08 62.0 78 41.0
Lj2C939G1 Lonicera japonica HOM05D004023 ORTHO05D004681 4.0e-08 61.6 50 60.0
Actinidia24483 Actinidia chinensis HOM05D004023 ORTHO05D004681 5.2e-08 61.2 50 58.0
AUR62025247 Chenopodium quinoa HOM05D004023 ORTHO05D004681 5.2e-08 61.2 67 49.3
DCAR_024747 Daucus carota HOM05D004023 ORTHO05D004681 6.8e-08 60.8 85 40.0
unitig_0.g313 Utricularia gibba HOM05D004023 ORTHO05D004681 6.8e-08 60.8 61 52.5
Actinidia07003 Actinidia chinensis HOM05D004023 ORTHO05D004681 8.9e-08 60.5 60 51.7
Aqoxy1G00042 Aquilegia oxysepala HOM05D004023 ORTHO05D004681 8.9e-08 60.5 67 49.3
Lsat_1_v5_gn_2_38101 Lactuca sativa HOM05D004023 ORTHO05D004681 8.9e-08 60.5 74 43.2
Sopen12g034560 Solanum pennellii HOM05D004023 ORTHO05D004681 8.9e-08 60.5 62 51.6
Migut.D00690 Erythranthe guttata HOM05D004023 ORTHO05D004681 1.2e-07 60.1 45 64.4
DCAR_006328 Daucus carota HOM05D004023 ORTHO05D004681 1.5e-07 59.7 61 55.7
Peaxi162Scf00062g00920 Petunia axillaris HOM05D004023 ORTHO05D004681 1.5e-07 59.7 62 50.0
Os03g0177000 Oryza sativa ssp. japonica HOM05D004023 ORTHO05D004681 2.0e-07 59.3 63 46.0
Hund08779 Selenicereus undatus HOM05D004023 ORTHO05D004681 2.0e-07 59.3 61 49.2
Nitab4.5_0001925g0260 Nicotiana tabacum HOM05D004023 ORTHO05D004681 2.6e-07 58.9 50 56.0
Solyc12g099940.2 Solanum lycopersicum HOM05D004023 ORTHO05D004681 2.6e-07 58.9 50 58.0
ATR0598G151 Amborella trichopoda HOM05D004023 ORTHO05D004681 3.4e-07 58.5 72 43.1
ATR1096G005 Amborella trichopoda HOM05D004023 ORTHO05D004681 3.4e-07 58.5 44 56.8
Cc01_g06740 Coffea canephora HOM05D004023 ORTHO05D004681 3.4e-07 58.5 57 47.4
HanXRQChr09g0237831 Helianthus annuus HOM05D004023 ORTHO05D004681 3.4e-07 58.5 86 40.7
Nitab4.5_0011805g0030 Nicotiana tabacum HOM05D004023 ORTHO05D004681 3.4e-07 58.5 50 56.0
PGSC0003DMG400004653 Solanum tuberosum HOM05D004023 ORTHO05D004681 3.4e-07 58.5 62 50.0
Sed0008804 Sechium edule HOM05D004023 ORTHO05D004681 4.4e-07 58.2 86 40.7
Zm00001eb401920 Zea mays HOM05D004023 ORTHO05D004681 4.4e-07 58.2 46 58.7
Zm00001eb401960 Zea mays HOM05D004023 ORTHO05D004681 4.4e-07 58.2 46 58.7
arahy.Tifrunner.gnm1.ann1.NU1P8G Arachis hypogaea HOM05D004023 ORTHO05D004681 5.8e-07 57.8 61 52.5
CDE05G3056 Ceratophyllum demersum HOM05D004023 ORTHO05D004681 5.8e-07 57.8 105 36.2
Hma1.2p1_1711F.1_g298750 Hydrangea macrophylla HOM05D004023 ORTHO05D004681 5.8e-07 57.8 91 39.6
Nn7g37124 Nelumbo nucifera HOM05D004023 ORTHO05D004681 5.8e-07 57.8 105 38.1
PSO339G3635 Papaver somniferum HOM05D004023 ORTHO05D004681 5.8e-07 57.8 57 54.4
PSO384G4677 Papaver somniferum HOM05D004023 ORTHO05D004681 5.8e-07 57.8 57 54.4
CAN.G484.8 Capsicum annuum HOM05D004023 ORTHO05D004681 7.5e-07 57.4 50 56.0
AUR62028938 Chenopodium quinoa HOM05D004023 ORTHO05D004681 9.8e-07 57.0 61 49.2
HanXRQChr14g0431991 Helianthus annuus HOM05D004023 ORTHO05D004681 2.9e-06 55.5 61 49.2
Lsat_1_v5_gn_7_35101 Lactuca sativa HOM05D004023 ORTHO05D004681 2.9e-06 55.5 45 57.8
Cpa.g.sc28.45 Carica papaya HOM05D004023 ORTHO05D004681 4.9e-06 54.7 62 45.2
Gohir.A13G191000 Gossypium hirsutum HOM05D004023 ORTHO05D004681 4.9e-06 54.7 86 38.4
vmacro04098 Vaccinium macrocarpon HOM05D004023 ORTHO05D004681 4.9e-06 54.7 69 49.3
Gohir.D13G196385 Gossypium hirsutum HOM05D004023 ORTHO05D004681 8.3e-06 53.9 86 38.4


User provided reference genes

Program Settings