Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G136100 Glycine max HOM05D004872 ORTHO05D006050 1.1e-96 356.7 185 100.0
Glyma.01G027700 Glycine max HOM05D004872 ORTHO05D006050 1.5e-82 309.7 178 92.7
VMungo0251G0214 Vigna mungo HOM05D004872 ORTHO05D006050 1.1e-72 276.9 178 82.0
Phvul.002G255800 Phaseolus vulgaris HOM05D004872 ORTHO05D006050 3.5e-71 271.9 182 80.8
arahy.Tifrunner.gnm1.ann1.EX2XSN Arachis hypogaea HOM05D004872 ORTHO05D006050 4.3e-61 238.4 178 73.6
arahy.Tifrunner.gnm1.ann1.U00P2R Arachis hypogaea HOM05D004872 ORTHO05D006050 9.6e-61 237.3 178 74.2
Lj6g0013181 Lotus japonicus HOM05D004872 ORTHO05D006050 1.3e-57 226.9 180 71.1
Medtr7g096840 Medicago truncatula HOM05D004872 ORTHO05D006050 4.9e-57 224.9 177 73.4
TPR.G29301 Trifolium pratense HOM05D004872 ORTHO05D006050 4.9e-57 224.9 180 72.2
arahy.Tifrunner.gnm1.ann1.K1U5S9 Arachis hypogaea HOM05D004872 ORTHO05D006050 8.4e-57 224.2 202 64.4
Lj6g0009628 Lotus japonicus HOM05D004872 ORTHO05D006050 4.2e-56 221.9 173 72.3
TPR.G26917 Trifolium pratense HOM05D004872 ORTHO05D006050 1.6e-55 219.9 180 70.6
Psat2g130480 Pisum sativum HOM05D004872 ORTHO05D006050 2.7e-55 219.2 178 70.8
arahy.Tifrunner.gnm1.ann1.R4J47E Arachis hypogaea HOM05D004872 ORTHO05D006050 1.6e-52 209.9 205 62.0
Haze_23271 Corylus avellana HOM05D004500 ORTHO05D005775 3.9e-46 188.7 159 64.8
QL01p016491 Quercus lobata HOM05D004872 ORTHO05D006050 3.9e-46 188.7 187 59.9
QL01p024148 Quercus lobata HOM05D004872 ORTHO05D006050 3.9e-46 188.7 187 59.9
Lalb_Chr04g0249071 Lupinus albus HOM05D004872 ORTHO05D006050 6.7e-46 188.0 170 65.3
CiPaw.14G110500 Carya illinoinensis HOM05D004872 ORTHO05D006050 5.7e-45 184.9 175 61.7
Cfa009914 Carpinus fangiana HOM05D004872 ORTHO05D006050 9.7e-45 184.1 160 63.8
CiPaw.13G148000 Carya illinoinensis HOM05D004872 ORTHO05D006050 9.7e-45 184.1 176 60.8
Atru.chr4.2930 Acer truncatum HOM05D004872 ORTHO05D006050 6.5e-41 171.4 166 60.8
Manes.09G068000 Manihot esculenta HOM05D004872 ORTHO05D006050 7.2e-40 167.9 149 60.4
Dinv22205 Davidia involucrata HOM05D004872 ORTHO05D006050 7.9e-39 164.5 159 60.4
MD12G1010900 Malus domestica HOM05D004872 ORTHO05D006050 3.0e-38 162.5 178 54.5
TWI31G0308 Tripterygium wilfordii HOM05D004872 ORTHO05D006050 3.0e-38 162.5 178 55.1
Duzib150G1163 Durio zibethinus HOM05D004872 ORTHO05D006050 5.1e-38 161.8 171 56.1
RcHm_v2.0_Chr5g0046151 Rosa chinensis HOM05D004872 ORTHO05D006050 6.7e-38 161.4 145 57.2
Prupe.7G012800 Prunus persica HOM05D004872 ORTHO05D006050 1.5e-37 160.2 180 52.2
FAN25G2824 Fragaria x ananassa HOM05D004872 ORTHO05D006050 2.0e-37 159.8 145 57.2
Ciclev10006059m.g Citrus clementina HOM05D004872 ORTHO05D006050 3.3e-37 159.1 146 61.6
Thecc.09G254600 Theobroma cacao HOM05D004872 ORTHO05D006050 3.3e-37 159.1 148 60.1
Cpa.g.sc34.184 Carica papaya HOM05D004872 ORTHO05D006050 7.4e-37 157.9 161 55.3
Prupe.4G268800 Prunus persica HOM05D004872 ORTHO05D006050 1.3e-36 157.1 155 52.9
FvH4_3g25170 Fragaria vesca HOM05D004872 ORTHO05D006050 1.7e-36 156.8 145 56.6
CSS0006428 Camellia sinensis var. sinensis HOM05D004872 ORTHO05D006050 1.8e-35 153.3 154 55.2
Potri.013G075500 Populus trichocarpa HOM05D004872 ORTHO05D006050 3.1e-35 152.5 177 53.7
Rhsim07G0167900 Rhododendron simsii HOM05D004872 ORTHO05D006050 4.1e-35 152.1 170 51.2
GSVIVG01037356001 Vitis vinifera HOM05D004872 ORTHO05D006050 4.1e-35 152.1 169 53.8
Sabra13G0065000 Salix brachista HOM05D004872 ORTHO05D006050 5.3e-35 151.8 176 54.0
SGA_v2.0_scaffold144G35815 Striga asiatica HOM05D004872 ORTHO05D006050 1.2e-34 150.6 171 53.2
MSTRG.1742 Avicennia marina HOM05D004872 ORTHO05D006050 2.0e-34 149.8 175 50.3
COL.COLO4_24934 Corchorus olitorius HOM05D004872 ORTHO05D006050 2.6e-34 149.4 151 53.6
DCAR_030961 Daucus carota HOM05D004872 ORTHO05D006050 2.6e-34 149.4 174 54.0
Manes.08G069866 Manihot esculenta HOM05D004872 ORTHO05D006050 3.4e-34 149.1 146 57.5
TAR633G0253 Trochodendron aralioides HOM05D004872 ORTHO05D006050 4.5e-34 148.7 173 53.8
CANSAT54G2026 Cannabis sativa HOM05D004872 ORTHO05D006050 1.0e-33 147.5 171 55.0
Peaxi162Scf00025g02826 Petunia axillaris HOM05D004872 ORTHO05D006050 1.7e-33 146.7 147 53.7
FAN11G3172 Fragaria x ananassa HOM05D004872 ORTHO05D006050 2.2e-33 146.4 121 62.8
Lsat_1_v5_gn_3_110040 Lactuca sativa HOM05D004872 ORTHO05D006050 6.5e-33 144.8 159 55.3
Nn2g15815 Nelumbo nucifera HOM05D004872 ORTHO05D006050 6.5e-33 144.8 159 56.6
Gohir.D09G105300 Gossypium hirsutum HOM05D004872 ORTHO05D006050 8.5e-33 144.4 160 51.9
THA.LOC104816943 Tarenaya hassleriana HOM05D004872 ORTHO05D006050 8.5e-33 144.4 155 53.5
CAN.G1549.27 Capsicum annuum HOM05D004872 ORTHO05D006050 1.1e-32 144.1 165 52.1
Gohir.A09G108400 Gossypium hirsutum HOM05D004872 ORTHO05D006050 1.9e-32 143.3 164 51.8
HanXRQChr08g0217181 Helianthus annuus HOM05D004872 ORTHO05D006050 1.9e-32 143.3 154 53.9
PGSC0003DMG400003977 Solanum tuberosum HOM05D004872 ORTHO05D006050 1.9e-32 143.3 147 56.5
Lsat_1_v5_gn_8_24740 Lactuca sativa HOM05D004872 ORTHO05D006050 3.2e-32 142.5 148 57.4
Cc11_g04500 Coffea canephora HOM05D004872 ORTHO05D006050 7.2e-32 141.4 171 49.7
ECA233G5422 Erigeron canadensis HOM05D004872 ORTHO05D006050 7.2e-32 141.4 144 53.5
Sp4g26910 Schrenkiella parvula HOM05D004872 ORTHO05D006050 1.6e-31 140.2 142 53.5
Nn8g39701 Nelumbo nucifera HOM05D004872 ORTHO05D006050 2.1e-31 139.8 151 57.0
Thhalv10019047m.g Eutrema salsugineum HOM05D004872 ORTHO05D006050 2.7e-31 139.4 159 50.3
arahy.Tifrunner.gnm1.ann1.X2Q8UN Arachis hypogaea HOM05D004872 ORTHO05D006050 1.0e-30 137.5 159 56.0
ClCG02G022680 Citrullus lanatus HOM05D004872 ORTHO05D006050 1.4e-30 137.1 171 50.3
Gorai.006G122300 Gossypium raimondii HOM05D004872 ORTHO05D006050 1.4e-30 137.1 161 50.3
Hma1.2p1_0299F.1_g117840 Hydrangea macrophylla HOM05D004872 ORTHO05D006050 1.8e-30 136.7 159 52.8
Aa31LG1G26360 Aethionema arabicum HOM05D004872 ORTHO05D006050 3.0e-30 136.0 142 55.6
MELO3C014544.2 Cucumis melo HOM05D004872 ORTHO05D006050 3.0e-30 136.0 172 50.6
Migut.E01400 Erythranthe guttata HOM05D004872 ORTHO05D006050 3.0e-30 136.0 158 51.3
Actinidia06989 Actinidia chinensis HOM05D004500 ORTHO05D005775 6.7e-30 134.8 115 61.7
CsaV3_6G038800 Cucumis sativus L. HOM05D004872 ORTHO05D006050 8.8e-30 134.4 160 51.9
Nitab4.5_0002138g0010 Nicotiana tabacum HOM05D004872 ORTHO05D006050 4.4e-29 132.1 140 50.7
Eucgr.J02277 Eucalyptus grandis HOM05D004872 ORTHO05D006050 1.3e-28 130.6 164 51.8
BcaB02g10512 Brassica carinata HOM05D004872 ORTHO05D006050 1.7e-28 130.2 170 49.4
SalBow1G8122 Salvia bowleyana HOM05D004872 ORTHO05D006050 1.7e-28 130.2 130 55.4
Sc11g0003110 Simmondsia chinensis HOM05D004872 ORTHO05D006050 2.8e-28 129.4 167 48.5
BraA05t19473Z Brassica rapa HOM05D004872 ORTHO05D006050 3.7e-28 129.0 127 55.9
CiPaw.13G148200 Carya illinoinensis HOM05D004872 ORTHO05D006050 1.1e-27 127.5 141 56.7
SalBow6G3136 Salvia bowleyana HOM05D004872 ORTHO05D006050 1.1e-27 127.5 150 51.3
BcaC02g12267 Brassica carinata HOM05D004872 ORTHO05D006050 1.4e-27 127.1 127 53.5
C04p05820 Brassica napus HOM05D004872 ORTHO05D006050 1.4e-27 127.1 127 53.5
BolC4t22211H Brassica oleracea HOM05D004872 ORTHO05D006050 1.4e-27 127.1 172 44.8
Solyc11g005570.2 Solanum lycopersicum HOM05D004872 ORTHO05D006050 1.8e-27 126.7 150 50.7
Sopen11g001540 Solanum pennellii HOM05D004872 ORTHO05D006050 1.8e-27 126.7 150 50.7
BcaB02g08868 Brassica carinata HOM05D004872 ORTHO05D006050 2.4e-27 126.3 150 48.7
AL4G43900 Arabidopsis lyrata HOM05D004872 ORTHO05D006050 3.1e-27 125.9 163 48.5
Sp2g10980 Schrenkiella parvula HOM05D004872 ORTHO05D006050 3.1e-27 125.9 153 48.4
HanXRQChr10g0315331 Helianthus annuus HOM05D004872 ORTHO05D006050 4.1e-27 125.6 188 44.1
Carub.0004s2739 Capsella rubella HOM05D004872 ORTHO05D006050 7.0e-27 124.8 162 48.1
PSO541G2017 Papaver somniferum HOM05D004872 ORTHO05D006050 1.2e-26 124.0 139 49.6
A05p04990 Brassica napus HOM05D004872 ORTHO05D006050 1.6e-26 123.6 156 47.4
PSO017G2452 Papaver somniferum HOM05D004872 ORTHO05D006050 4.5e-26 122.1 151 49.0
PSO017G5814 Papaver somniferum HOM05D004872 ORTHO05D006050 4.5e-26 122.1 151 49.0
PSO529G0002 Papaver somniferum HOM05D004872 ORTHO05D006050 4.5e-26 122.1 151 49.0
PSO591G0356 Papaver somniferum HOM05D004872 ORTHO05D006050 4.5e-26 122.1 151 49.0
PSO705G0001 Papaver somniferum HOM05D004872 ORTHO05D006050 4.5e-26 122.1 151 49.0
BolC4t23202H Brassica oleracea HOM05D004872 ORTHO05D006050 1.0e-25 120.9 151 48.3
A05p12650 Brassica napus HOM05D004872 ORTHO05D006050 1.3e-25 120.6 153 49.7
AUR62000220 Chenopodium quinoa HOM05D004872 ORTHO05D006050 1.3e-25 120.6 142 51.4
PSO591G0248 Papaver somniferum HOM05D004872 ORTHO05D006050 1.7e-25 120.2 151 48.3
BraA05t20203Z Brassica rapa HOM05D004872 ORTHO05D006050 2.2e-25 119.8 152 50.0
MBI17_g09534_MAGBIO Magnolia biondii HOM05D004872 ORTHO05D006050 2.2e-25 119.8 161 49.7
Hund07423 Selenicereus undatus HOM05D004872 ORTHO05D006050 2.2e-25 119.8 135 54.1
Ah.04g159640 Amaranthus hybridus HOM05D004872 ORTHO05D006050 2.9e-25 119.4 159 47.2
AT2G44820 Arabidopsis thaliana HOM05D004872 ORTHO05D006050 2.9e-25 119.4 159 49.7
CARHR140030 Cardamine hirsuta HOM05D004872 ORTHO05D006050 6.5e-25 118.2 150 47.3
Aqoxy7G03169 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 8.5e-25 117.9 152 46.1
vmacro05825 Vaccinium macrocarpon HOM05D004872 ORTHO05D006050 8.5e-25 117.9 162 45.7
Aqoxy72s001 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 1.1e-24 117.5 169 45.0
Oeu040527.1 Olea europaea HOM05D004872 ORTHO05D006050 1.1e-24 117.5 127 57.5
Aqoxy1G01418 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 1.5e-24 117.1 175 44.6
Aqoxy2G00467 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 2.5e-24 116.3 152 46.7
AUR62006565 Chenopodium quinoa HOM05D004872 ORTHO05D006050 2.5e-24 116.3 125 53.6
ECA236G0590 Erigeron canadensis HOM05D004872 ORTHO05D006050 2.5e-24 116.3 108 58.3
Oeu026038.1 Olea europaea HOM05D004872 ORTHO05D006050 4.2e-24 115.5 129 56.6
CDE05G2894 Ceratophyllum demersum HOM05D004872 ORTHO05D006050 7.2e-24 114.8 156 44.2
Nitab4.5_0001582g0110 Nicotiana tabacum HOM05D004872 ORTHO05D006050 9.4e-24 114.4 123 52.8
Sed0007255 Sechium edule HOM05D004872 ORTHO05D006050 2.7e-23 112.8 137 51.8
HPP92_015870 Vanilla planifolia HOM05D004872 ORTHO05D006050 1.0e-22 110.9 126 50.0
AL7G43510 Arabidopsis lyrata HOM05D004872 ORTHO05D006050 6.7e-22 108.2 156 44.2
EL10Ac4g10086 Beta vulgaris HOM05D004872 ORTHO05D006050 8.8e-22 107.8 142 45.8
Aa31LG9G10050 Aethionema arabicum HOM05D004872 ORTHO05D006050 1.5e-21 107.1 159 43.4
BcaC02g11364 Brassica carinata HOM05D004872 ORTHO05D006050 3.7e-20 102.4 165 46.1
ATR0665G028 Amborella trichopoda HOM05D004872 ORTHO05D006050 4.8e-20 102.1 137 46.0
Os01g0224500 Oryza sativa ssp. japonica HOM05D004872 ORTHO05D006050 1.1e-19 100.9 157 44.6
TPR.G14060 Trifolium pratense HOM05D004872 ORTHO05D006050 3.5e-18 95.9 120 56.7
Zm00001eb192850 Zea mays HOM05D004872 ORTHO05D006050 8.5e-17 91.3 158 42.4
Sc11g0003120 Simmondsia chinensis HOM05D004872 ORTHO05D006050 9.4e-16 87.8 106 51.9
Ca_21429_v3 Cicer arietinum L. HOM05D004872 ORTHO05D006050 2.1e-15 86.7 90 58.9
PGR102G1802 Punica granatum HOM05D004872 ORTHO05D006050 6.1e-15 85.1 150 37.3
Zm00001eb281550 Zea mays HOM05D004872 ORTHO05D006050 5.7e-13 78.6 122 45.1
SEGI_13451 Sequoiadendron giganteum HOM05D004872 ORTHO05D006050 4.1e-11 72.4 129 35.7
Atru.chr1.3406 Acer truncatum HOM05D004872 ORTHO05D006050 5.4e-11 72.0 89 52.8
Mapoly0036s0026 Marchantia polymorpha HOM05D004872 ORTHO05D006050 1.7e-09 67.0 150 30.7
AagrBONN_evm.TU.Sc2ySwM_362.236 Anthoceros agrestis HOM05D004872 ORTHO05D006050 6.5e-09 65.1 153 32.0
Pp3c23_7100 Physcomitrium patens HOM05D004872 ORTHO05D006050 1.9e-08 63.5 156 30.8
Aqoxy7G03168 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 7.2e-08 61.6 129 34.9
Zm00001eb416880 Zea mays HOM05D004872 ORTHO05D006050 1.6e-07 60.5 101 42.6
HanXRQChr17g0569331 Helianthus annuus HOM05D004872 ORTHO05D006050 8.0e-07 58.2 69 46.4
C04p16540 Brassica napus HOM05D004872 ORTHO05D006050 1.4e-06 57.4 190 32.6


User provided reference genes

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