Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G129502 Glycine max HOM05D008992 ORTHO05D002272 8.2e-73 276.9 139 100.0
VMungo0251G0856 Vigna mungo HOM05D008992 ORTHO05D002272 2.1e-20 102.8 118 47.5
Ca_03843_v3 Cicer arietinum L. HOM05D008992 ORTHO05D002272 4.7e-20 101.7 115 48.7
Lj1g0000579 Lotus japonicus HOM05D008992 ORTHO05D002272 6.8e-19 97.8 111 47.7
Lj4g0020153 Lotus japonicus HOM05D008992 ORTHO05D002272 6.8e-19 97.8 89 56.2
Lj4g0011648 Lotus japonicus HOM05D008992 ORTHO05D002272 4.2e-16 88.6 93 51.6
Ca_17802_v3 Cicer arietinum L. HOM05D008992 ORTHO05D002272 2.1e-15 86.3 152 36.2
Lalb_Chr07g0185621 Lupinus albus HOM05D008992 ORTHO05D002272 3.5e-15 85.5 103 46.6
Medtr8g089440 Medicago truncatula HOM05D008992 ORTHO05D002272 3.9e-14 82.0 106 44.3
Medtr8g089480 Medicago truncatula HOM05D008992 ORTHO05D002272 3.9e-14 82.0 106 44.3
Medtr8g089530 Medicago truncatula HOM05D008992 ORTHO05D002272 8.7e-14 80.9 105 45.7
TPR.G6199 Trifolium pratense HOM05D008992 ORTHO05D002272 2.5e-13 79.3 107 44.9
TPR.G6214 Trifolium pratense HOM05D008992 ORTHO05D002272 2.5e-13 79.3 108 44.4
TPR.G6244 Trifolium pratense HOM05D008992 ORTHO05D007974 4.3e-13 78.6 107 43.9
Lj4g0010390 Lotus japonicus HOM05D008992 ORTHO05D002272 1.3e-12 77.0 105 41.0
Lalb_Chr12g0204211 Lupinus albus HOM05D008992 ORTHO05D002272 3.1e-11 72.4 89 42.7
Lalb_Chr07g0190491 Lupinus albus HOM05D008992 ORTHO05D002272 4.0e-11 72.0 73 50.7
COL.COLO4_31049 Corchorus olitorius HOM05D002972 ORTHO05D002272 1.5e-10 70.1 91 44.0
Psat0s3155g0080 Pisum sativum HOM05D008992 ORTHO05D002272 2.0e-10 69.7 95 44.2
Ca_16626_v3 Cicer arietinum L. HOM05D008992 ORTHO05D002272 7.6e-10 67.8 99 39.4
Dinv10222 Davidia involucrata HOM05D002972 ORTHO05D002272 7.6e-10 67.8 111 34.2
TPR.G35385 Trifolium pratense HOM05D008992 ORTHO05D002272 9.9e-10 67.4 93 45.2
Psat0s921g0280 Pisum sativum HOM05D008992 ORTHO05D002272 2.2e-09 66.2 93 40.9
Medtr2g006000 Medicago truncatula HOM05D008992 ORTHO05D002272 2.9e-09 65.9 103 37.9
Medtr8g089500 Medicago truncatula HOM05D008992 ORTHO05D002272 2.9e-09 65.9 164 34.1
Duzib147G0607 Durio zibethinus HOM05D002972 ORTHO05D002272 3.8e-09 65.5 93 36.6
Hma1.2p1_1114F.1_g258730 Hydrangea macrophylla HOM05D002972 ORTHO05D002272 3.8e-09 65.5 112 36.6
arahy.Tifrunner.gnm1.ann1.1MNX0Y Arachis hypogaea HOM05D008992 ORTHO05D002272 8.4e-09 64.3 84 41.7
CsaV3_7G001090 Cucumis sativus L. HOM05D002972 ORTHO05D002272 1.1e-08 63.9 111 29.7
Medtr4g417290 Medicago truncatula HOM05D008992 ORTHO05D002272 1.4e-08 63.5 95 36.8
arahy.Tifrunner.gnm1.ann1.C8FNMN Arachis hypogaea HOM05D008992 ORTHO05D002272 2.4e-08 62.8 84 40.5
ClCG02G004020 Citrullus lanatus HOM05D002972 ORTHO05D002272 2.4e-08 62.8 111 29.7
MELO3C013346.2 Cucumis melo HOM05D002972 ORTHO05D002272 3.2e-08 62.4 111 29.7
Lalb_Chr06g0163671 Lupinus albus HOM05D002972 ORTHO05D002272 5.4e-08 61.6 108 28.7
Cpa.g.sc6.181 Carica papaya HOM05D002972 ORTHO05D002272 7.1e-08 61.2 107 33.6
TPR.G6204 Trifolium pratense HOM05D008992 ORTHO05D002272 7.1e-08 61.2 98 39.8
CAN.G438.50 Capsicum annuum HOM05D002972 ORTHO05D002272 9.3e-08 60.8 96 33.3
Ciclev10028228m.g Citrus clementina HOM05D002972 ORTHO05D002272 9.3e-08 60.8 94 29.8
COL.COLO4_22001 Corchorus olitorius HOM05D002972 ORTHO05D002272 9.3e-08 60.8 78 41.0
Duzib147G1519 Durio zibethinus HOM05D000126 ORTHO05D000085 9.3e-08 60.8 104 36.5
Nitab4.5_0003885g0010 Nicotiana tabacum HOM05D002972 ORTHO05D002272 9.3e-08 60.8 120 28.3
vmacro17724 Vaccinium macrocarpon HOM05D002972 ORTHO05D002272 9.3e-08 60.8 100 36.0
Eucgr.I01431 Eucalyptus grandis HOM05D002972 ORTHO05D002272 1.2e-07 60.5 108 29.6
COL.COLO4_22003 Corchorus olitorius HOM05D002972 ORTHO05D002272 1.6e-07 60.1 99 36.4
PGR142G3299 Punica granatum HOM05D002972 ORTHO05D002272 1.6e-07 60.1 98 31.6
Sed0027632 Sechium edule HOM05D002972 ORTHO05D002272 1.6e-07 60.1 118 27.1
Lalb_Chr12g0204191 Lupinus albus HOM05D008992 ORTHO05D002272 2.1e-07 59.7 101 37.6
Medtr2g022010 Medicago truncatula HOM05D008992 ORTHO05D002272 2.1e-07 59.7 87 42.5
Lalb_Chr21g0306941 Lupinus albus HOM05D002972 ORTHO05D002272 2.7e-07 59.3 105 28.6
Gohir.A11G175900 Gossypium hirsutum HOM05D000126 ORTHO05D000085 3.5e-07 58.9 77 36.4
Rhsim08G0123100 Rhododendron simsii HOM05D002972 ORTHO05D002272 3.5e-07 58.9 104 35.6
Sopen03g039260 Solanum pennellii HOM05D002972 ORTHO05D002272 3.5e-07 58.9 96 33.3
CSS0037442 Camellia sinensis var. sinensis HOM05D002972 ORTHO05D002272 4.6e-07 58.5 108 29.6
Nitab4.5_0003159g0070 Nicotiana tabacum HOM05D002972 ORTHO05D002272 4.6e-07 58.5 111 29.7
Sed0017149 Sechium edule HOM05D002972 ORTHO05D002272 4.6e-07 58.5 118 27.1
Solyc03g120360.1 Solanum lycopersicum HOM05D002972 ORTHO05D002272 4.6e-07 58.5 109 31.2
Sopen03g039250 Solanum pennellii HOM05D002972 ORTHO05D002272 4.6e-07 58.5 113 26.5
CSS0006608 Camellia sinensis var. sinensis HOM05D002972 ORTHO05D002272 6.0e-07 58.2 108 30.6
COL.COLO4_21920 Corchorus olitorius HOM05D000126 ORTHO05D002272 6.0e-07 58.2 70 38.6
Gorai.007G195600 Gossypium raimondii HOM05D000126 ORTHO05D000085 6.0e-07 58.2 77 36.4
PGSC0003DMG400002637 Solanum tuberosum HOM05D002972 ORTHO05D002272 6.0e-07 58.2 105 30.5
PGSC0003DMG400002638 Solanum tuberosum HOM05D002972 ORTHO05D002272 6.0e-07 58.2 135 27.4
FAN27G2301 Fragaria x ananassa HOM05D002972 ORTHO05D002272 7.9e-07 57.8 96 28.1
Lalb_Chr02g0143421 Lupinus albus HOM05D002972 ORTHO05D002272 7.9e-07 57.8 114 22.8
Psat7g060160 Pisum sativum HOM05D008992 ORTHO05D002272 7.9e-07 57.8 96 32.3
TPR.G10 Trifolium pratense HOM05D002972 ORTHO05D002272 7.9e-07 57.8 101 25.7
Ciclev10025208m.g Citrus clementina HOM05D000126 ORTHO05D000085 1.0e-06 57.4 106 30.2
TWI09G0202 Tripterygium wilfordii HOM05D002972 ORTHO05D002272 1.0e-06 57.4 145 24.1
arahy.Tifrunner.gnm1.ann1.8AQR6P Arachis hypogaea HOM05D002972 ORTHO05D002272 1.3e-06 57.0 114 24.6
arahy.Tifrunner.gnm1.ann1.DENV23 Arachis hypogaea HOM05D002972 ORTHO05D002272 1.3e-06 57.0 114 24.6
COL.COLO4_07334 Corchorus olitorius HOM05D002972 ORTHO05D002272 1.3e-06 57.0 95 37.9
Lj1g0000965 Lotus japonicus HOM05D002972 ORTHO05D002272 1.3e-06 57.0 113 23.0
Hund14008 Selenicereus undatus HOM05D002972 ORTHO05D002272 1.3e-06 57.0 93 28.0
BcaC06g36191 Brassica carinata HOM05D002972 ORTHO05D002272 1.7e-06 56.6 100 33.0
C07p06710 Brassica napus HOM05D002972 ORTHO05D002272 1.7e-06 56.6 100 33.0
BolC7t41094H Brassica oleracea HOM05D002972 ORTHO05D002272 1.7e-06 56.6 100 33.0
FAN20G3067 Fragaria x ananassa HOM05D005026 ORTHO05D005981 1.7e-06 56.6 107 25.2
MD10G1125400 Malus domestica HOM05D002972 ORTHO05D002272 1.7e-06 56.6 96 28.1
A03p46120 Brassica napus HOM05D002972 ORTHO05D002272 2.3e-06 56.2 108 30.6
A07p04220 Brassica napus HOM05D002972 ORTHO05D002272 2.3e-06 56.2 100 33.0
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 2.3e-06 56.2 96 27.1
Medtr1g112660 Medicago truncatula HOM05D002972 ORTHO05D002272 2.3e-06 56.2 98 26.5
Psat6g232000 Pisum sativum HOM05D002972 ORTHO05D002272 2.3e-06 56.2 105 25.7
Prupe.8G166700 Prunus persica HOM05D002972 ORTHO05D002272 2.3e-06 56.2 96 27.1
Dinv29033 Davidia involucrata HOM05D002972 ORTHO05D002272 3.0e-06 55.8 111 28.8
CANSAT25G2833 Cannabis sativa HOM05D002972 ORTHO05D002272 3.9e-06 55.5 110 25.5
ECA247G1059 Erigeron canadensis HOM05D000593 ORTHO05D002268 3.9e-06 55.5 85 34.1
FvH4_2g15450 Fragaria vesca HOM05D002972 ORTHO05D002272 3.9e-06 55.5 122 24.6
FAN24G0982 Fragaria x ananassa HOM05D005026 ORTHO05D005981 3.9e-06 55.5 122 24.6
EL10As8g23886 Beta vulgaris HOM05D002972 ORTHO05D002272 5.1e-06 55.1 96 31.2
BraA07t28213Z Brassica rapa HOM05D002972 ORTHO05D002272 5.1e-06 55.1 94 34.0
HanXRQChr02g0033861 Helianthus annuus HOM05D002972 ORTHO05D002272 5.1e-06 55.1 83 33.7
Phvul.007G019100 Phaseolus vulgaris HOM05D002972 ORTHO05D002272 5.1e-06 55.1 97 25.8
VMungo0720G1914 Vigna mungo HOM05D002972 ORTHO05D002272 5.1e-06 55.1 97 25.8
Glyma.10G281600 Glycine max HOM05D002972 ORTHO05D002272 6.6e-06 54.7 97 25.8


User provided reference genes

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