Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G127900 Glycine max HOM05D005359 ORTHO05D006431 1.4e-245 852.4 421 100.0
Glyma.05G169600 Glycine max HOM05D005359 ORTHO05D006431 9.1e-232 806.6 421 93.8
Phvul.002G250300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 1.3e-225 786.2 421 91.4
VMungo0251G3193 Vigna mungo HOM05D005359 ORTHO05D006431 1.0e-222 776.5 421 90.7
Lj4g0002358 Lotus japonicus HOM05D005359 ORTHO05D006431 1.8e-200 702.6 425 80.9
arahy.Tifrunner.gnm1.ann1.HK0KDN Arachis hypogaea HOM05D005359 ORTHO05D006431 2.4e-200 702.2 421 81.5
Glyma.15G046900 Glycine max HOM05D005359 ORTHO05D006431 2.4e-200 702.2 421 81.7
arahy.Tifrunner.gnm1.ann1.8TZ9EP Arachis hypogaea HOM05D005359 ORTHO05D006431 1.3e-198 696.4 421 80.8
Glyma.08G185900 Glycine max HOM05D005359 ORTHO05D006431 5.5e-197 691.0 421 81.0
Lj6g0011599 Lotus japonicus HOM05D005359 ORTHO05D006431 2.0e-194 682.6 421 79.6
VMungo0540G0616 Vigna mungo HOM05D005359 ORTHO05D006431 5.9e-191 671.0 421 77.7
Phvul.006G214300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 5.6e-189 664.5 421 76.2
Ca_00078_v3 Cicer arietinum L. HOM05D005359 ORTHO05D006431 6.1e-188 661.0 420 76.9
CiPaw.06G147600 Carya illinoinensis HOM05D005359 ORTHO05D006431 4.1e-184 648.3 421 74.8
Medtr2g007220 Medicago truncatula HOM05D005359 ORTHO05D006431 7.0e-184 647.5 421 75.3
Psat2g122240 Pisum sativum HOM05D005359 ORTHO05D006431 5.9e-183 644.4 421 75.1
Prupe.1G568000 Prunus persica HOM05D005359 ORTHO05D006431 1.3e-182 643.3 421 75.1
Manes.07G015400 Manihot esculenta HOM05D005359 ORTHO05D006431 1.7e-182 642.9 421 74.6
Eucgr.I02722 Eucalyptus grandis HOM05D005359 ORTHO05D006431 2.3e-182 642.5 421 74.3
Ciclev10001293m.g Citrus clementina HOM05D005359 ORTHO05D006431 3.9e-182 641.7 421 75.5
Cpa.g.sc113.63 Carica papaya HOM05D005359 ORTHO05D006431 8.6e-182 640.6 421 74.6
TPR.G2126 Trifolium pratense HOM05D005359 ORTHO05D006431 1.9e-181 639.4 421 74.8
Potri.001G210800 Populus trichocarpa HOM05D005359 ORTHO05D006431 2.1e-180 636.0 421 74.1
TWI14G1253 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 3.6e-180 635.2 421 72.7
Sabra01G0162800 Salix brachista HOM05D005359 ORTHO05D006431 4.7e-180 634.8 421 73.4
TWI23G0911 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 6.2e-180 634.4 421 72.7
Potri.003G019400 Populus trichocarpa HOM05D005359 ORTHO05D006431 2.3e-179 632.5 421 74.3
Haze_01666 Corylus avellana HOM05D005359 ORTHO05D006431 8.9e-179 630.6 421 74.6
QL08p043348 Quercus lobata HOM05D005359 ORTHO05D006431 1.2e-178 630.2 420 74.0
COL.COLO4_17869 Corchorus olitorius HOM05D005359 ORTHO05D006431 2.6e-178 629.0 421 72.7
MD15G1422700 Malus domestica HOM05D005359 ORTHO05D006431 5.8e-178 627.9 421 73.2
PGR042G0198 Punica granatum HOM05D005359 ORTHO05D006431 5.8e-178 627.9 421 71.5
Sabra03G0010900 Salix brachista HOM05D005359 ORTHO05D006431 5.8e-178 627.9 421 73.4
Duzib052G1228 Durio zibethinus HOM05D005359 ORTHO05D006431 7.5e-178 627.5 421 73.4
Thecc.02G038700 Theobroma cacao HOM05D005359 ORTHO05D006431 7.5e-178 627.5 421 73.4
Cfa005525 Carpinus fangiana HOM05D005359 ORTHO05D006431 1.3e-177 626.7 421 73.6
RcHm_v2.0_Chr7g0222501 Rosa chinensis HOM05D005359 ORTHO05D006431 1.3e-177 626.7 421 73.2
Dinv19364 Davidia involucrata HOM05D005359 ORTHO05D006431 2.9e-177 625.5 421 72.9
MD08G1228700 Malus domestica HOM05D005359 ORTHO05D006431 2.4e-176 622.5 404 75.0
Gohir.D01G169300 Gossypium hirsutum HOM05D005359 ORTHO05D006431 9.2e-176 620.5 421 72.2
Gorai.002G210900 Gossypium raimondii HOM05D005359 ORTHO05D006431 9.2e-176 620.5 421 72.2
CANSAT11G0924 Cannabis sativa HOM05D005359 ORTHO05D006431 1.0e-174 617.1 421 71.3
Gohir.A01G178400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 1.0e-174 617.1 421 71.7
Gorai.008G042100 Gossypium raimondii HOM05D005359 ORTHO05D006431 1.0e-174 617.1 421 72.2
Gohir.D12G040400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 2.3e-174 615.9 421 72.0
Dinv24279 Davidia involucrata HOM05D005359 ORTHO05D006431 3.9e-174 615.1 421 71.7
Gohir.A12G031900 Gossypium hirsutum HOM05D005359 ORTHO05D006431 8.6e-174 614.0 421 71.7
Lj5A252T45 Lonicera japonica HOM05D005359 ORTHO05D006431 1.1e-173 613.6 421 71.5
THA.LOC104819321 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 5.6e-173 611.3 421 71.7
CSS0002632 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 1.2e-172 610.1 421 71.3
FvH4_5g29550 Fragaria vesca HOM05D005359 ORTHO05D006431 2.1e-172 609.4 421 71.5
FAN18G3183 Fragaria x ananassa HOM05D005359 ORTHO05D006431 2.1e-172 609.4 421 71.5
Lalb_Chr20g0123431 Lupinus albus HOM05D005359 ORTHO05D006431 3.6e-172 608.6 421 69.1
CSS0043414 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 8.1e-172 607.4 421 71.0
CANSAT11G2649 Cannabis sativa HOM05D005359 ORTHO05D006431 1.1e-171 607.1 422 70.6
DCAR_013987 Daucus carota HOM05D005359 ORTHO05D006431 1.4e-171 606.7 421 69.4
Rhsim11G0129700 Rhododendron simsii HOM05D005359 ORTHO05D006431 1.4e-171 606.7 421 70.8
Sed0010360 Sechium edule HOM05D005359 ORTHO05D006431 1.8e-171 606.3 421 71.0
vmacro01763 Vaccinium macrocarpon HOM05D005359 ORTHO05D006431 4.0e-171 605.1 421 70.1
FAN08G1144 Fragaria x ananassa HOM05D005359 ORTHO05D006431 8.9e-171 604.0 421 71.0
Nn5g28206 Nelumbo nucifera HOM05D005359 ORTHO05D006431 7.5e-170 600.9 421 69.6
Oeu008891.1 Olea europaea HOM05D005359 ORTHO05D006431 2.9e-169 599.0 421 70.1
FAN13G1157 Fragaria x ananassa HOM05D005359 ORTHO05D006431 1.1e-168 597.0 421 69.8
DCAR_031890 Daucus carota HOM05D005359 ORTHO05D006431 2.7e-167 592.4 417 69.1
ClCG09G014240 Citrullus lanatus HOM05D005359 ORTHO05D006431 4.6e-167 591.7 421 68.9
TAR376G0200 Trochodendron aralioides HOM05D005359 ORTHO05D006431 1.3e-166 590.1 421 68.6
Aa31LG1G4050 Aethionema arabicum HOM05D005359 ORTHO05D006431 3.0e-166 589.0 421 67.5
Cc02_g22460 Coffea canephora HOM05D005359 ORTHO05D006431 3.0e-166 589.0 421 68.6
MSTRG.5231 Avicennia marina HOM05D005359 ORTHO05D006431 3.9e-166 588.6 421 69.6
CsaV3_6G037270 Cucumis sativus L. HOM05D005359 ORTHO05D006431 5.1e-166 588.2 421 68.2
Lsat_1_v5_gn_5_109981 Lactuca sativa HOM05D005359 ORTHO05D006431 1.9e-165 586.3 422 69.7
SalBow6G6401 Salvia bowleyana HOM05D005359 ORTHO05D006431 1.9e-165 586.3 421 69.1
TAR628G1654 Trochodendron aralioides HOM05D005359 ORTHO05D006431 7.3e-165 584.3 421 68.2
Peaxi162Scf00011g00352 Petunia axillaris HOM05D005359 ORTHO05D006431 2.4e-163 579.3 422 68.0
EL10Ac6g14556 Beta vulgaris HOM05D005359 ORTHO05D006431 4.0e-163 578.6 425 68.0
THA.LOC104809588 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 4.0e-163 578.6 421 68.6
MELO3C014388.2 Cucumis melo HOM05D005359 ORTHO05D006431 8.9e-163 577.4 416 67.3
Hund05788 Selenicereus undatus HOM05D005359 ORTHO05D006431 3.4e-162 575.5 423 67.1
AL1G21710 Arabidopsis lyrata HOM05D005359 ORTHO05D006431 7.6e-162 574.3 421 67.0
CiPaw.05G044000 Carya illinoinensis HOM05D005359 ORTHO05D006431 2.2e-161 572.8 421 69.1
Thhalv10007703m.g Eutrema salsugineum HOM05D005359 ORTHO05D006431 6.4e-161 571.2 421 67.0
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 6.4e-161 571.2 409 68.9
Sc16g0001650 Simmondsia chinensis HOM05D005359 ORTHO05D006431 8.4e-161 570.9 424 67.2
Lalb_Chr07g0185731 Lupinus albus HOM05D005359 ORTHO05D006431 1.1e-160 570.5 421 66.0
AUR62002965 Chenopodium quinoa HOM05D005359 ORTHO05D006431 1.4e-160 570.1 425 66.6
AUR62007773 Chenopodium quinoa HOM05D005359 ORTHO05D006431 1.4e-160 570.1 425 66.6
AT1G10780 Arabidopsis thaliana HOM05D005359 ORTHO05D006431 4.1e-160 568.5 421 66.3
GSVIVG01022967001 Vitis vinifera HOM05D005359 ORTHO05D006431 1.6e-159 566.6 424 67.9
HanXRQChr10g0289981 Helianthus annuus HOM05D005359 ORTHO05D006431 2.7e-159 565.8 421 66.3
ECA234G2063 Erigeron canadensis HOM05D005359 ORTHO05D006431 7.8e-159 564.3 421 65.8
HanXRQChr16g0514561 Helianthus annuus HOM05D005359 ORTHO05D006431 1.0e-158 563.9 421 66.7
Migut.N01041 Erythranthe guttata HOM05D005359 ORTHO05D006431 1.3e-158 563.5 421 67.0
Sp1g09480 Schrenkiella parvula HOM05D005359 ORTHO05D006431 1.3e-158 563.5 421 65.6
Carub.0001s1033 Capsella rubella HOM05D005359 ORTHO05D006431 8.6e-158 560.8 421 65.1
HanXRQChr06g0169581 Helianthus annuus HOM05D005359 ORTHO05D006431 1.5e-157 560.1 421 66.0
A09p64680 Brassica napus HOM05D005359 ORTHO05D006431 4.7e-156 555.1 421 65.1
BraA09t41824Z Brassica rapa HOM05D005359 ORTHO05D006431 8.1e-156 554.3 421 65.1
CARHR011000 Cardamine hirsuta HOM05D005359 ORTHO05D006431 8.1e-156 554.3 421 65.1
Nitab4.5_0007420g0030 Nicotiana tabacum HOM05D005359 ORTHO05D006431 1.1e-155 553.9 422 66.6
BolC8t52390H Brassica oleracea HOM05D005359 ORTHO05D006431 1.8e-155 553.1 421 64.6
C08p48500 Brassica napus HOM05D005359 ORTHO05D006431 4.0e-155 552.0 421 64.4
unitig_26.g9020 Utricularia gibba HOM05D005359 ORTHO05D006431 3.4e-154 548.9 421 65.1
Aqoxy5G02275 Aquilegia oxysepala HOM05D005359 ORTHO05D006431 5.8e-154 548.1 422 63.5
CAN.G1577.14 Capsicum annuum HOM05D005359 ORTHO05D006431 3.0e-150 535.8 423 64.5
PGSC0003DMG400023758 Solanum tuberosum HOM05D005359 ORTHO05D006431 1.5e-149 533.5 422 65.6
Sopen01g046670 Solanum pennellii HOM05D005359 ORTHO05D006431 3.6e-148 528.9 422 64.9
Nitab4.5_0002245g0060 Nicotiana tabacum HOM05D005359 ORTHO05D006431 3.8e-145 518.8 422 64.0
Sed0018525 Sechium edule HOM05D005359 ORTHO05D006431 3.5e-143 512.3 421 59.9
ATR0193G009 Amborella trichopoda HOM05D005359 ORTHO05D006431 1.1e-141 507.3 421 58.2
ECA236G4790 Erigeron canadensis HOM05D005359 ORTHO05D006431 8.1e-140 501.1 378 65.6
MBI06_g20718_MAGBIO Magnolia biondii HOM05D005359 ORTHO05D006431 1.1e-139 500.7 421 57.0
Ah.03g138120 Amaranthus hybridus HOM05D005359 ORTHO05D006431 3.8e-137 492.3 425 59.1
Os09g0454300 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 3.0e-134 482.6 421 55.3
Solyc01g104230.4 Solanum lycopersicum HOM05D005359 ORTHO05D006431 2.2e-129 466.5 357 67.2
Zm00001eb176520 Zea mays HOM05D005359 ORTHO05D006431 9.3e-128 461.1 425 54.4
Zm00001eb037840 Zea mays HOM05D005359 ORTHO05D006431 2.0e-122 443.4 425 52.5
Zm00001eb100430 Zea mays HOM05D005359 ORTHO05D006431 8.5e-121 438.0 408 52.9
Hma1.2p1_0217F.1_g092010 Hydrangea macrophylla HOM05D005359 ORTHO05D006431 1.2e-111 407.5 250 79.6
Thecc.02G038500 Theobroma cacao HOM05D005359 ORTHO05D006431 3.9e-110 402.5 282 69.5
Os08g0469500 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 1.9e-104 383.6 423 47.5
Lsat_1_v5_gn_4_48740 Lactuca sativa HOM05D005359 ORTHO05D006431 3.2e-104 382.9 397 53.1
Mapoly0113s0005 Marchantia polymorpha HOM05D005359 ORTHO05D006431 2.1e-103 380.2 412 45.9
AagrBONN_evm.TU.Sc2ySwM_117.2184 Anthoceros agrestis HOM05D005359 ORTHO05D006431 1.1e-88 331.3 374 46.3
Oeu033126.1 Olea europaea HOM05D005359 ORTHO05D006431 6.1e-87 325.5 302 58.3
SMO169G0280 Selaginella moellendorffii HOM05D005359 ORTHO05D006431 1.0e-86 324.7 413 43.1
HPP92_010977 Vanilla planifolia HOM05D005359 ORTHO05D006431 5.5e-80 302.4 299 53.2
Nn1g08733 Nelumbo nucifera HOM05D005359 ORTHO05D006431 4.1e-75 286.2 249 57.8
CDE11G1073 Ceratophyllum demersum HOM05D005359 ORTHO05D006431 8.0e-71 271.9 303 44.9
arahy.Tifrunner.gnm1.ann1.3FYK03 Arachis hypogaea HOM05D005359 ORTHO05D006431 3.0e-70 270.0 266 56.8
Atru.chr6.646 Acer truncatum HOM05D005359 ORTHO05D006431 1.4e-59 234.6 134 80.6
BcaC05g24954 Brassica carinata HOM05D005359 ORTHO05D006431 2.9e-44 183.7 155 61.3
arahy.Tifrunner.gnm1.ann1.BYQ4G2 Arachis hypogaea HOM05D005359 ORTHO05D006431 7.1e-43 179.1 99 81.8
Dinv24276 Davidia involucrata HOM05D005359 ORTHO05D006431 2.1e-42 177.6 131 65.6
arahy.Tifrunner.gnm1.ann1.94J17Q Arachis hypogaea HOM05D005359 ORTHO05D006431 1.8e-38 164.5 91 81.3
arahy.Tifrunner.gnm1.ann1.E0G9L5 Arachis hypogaea HOM05D005359 ORTHO05D006431 1.2e-29 135.2 74 79.7
arahy.Tifrunner.gnm1.ann1.B308TG Arachis hypogaea HOM05D005359 ORTHO05D006431 2.6e-29 134.0 71 81.7
arahy.Tifrunner.gnm1.ann1.F717DE Arachis hypogaea HOM05D005359 ORTHO05D006431 8.4e-28 129.0 71 80.3
arahy.Tifrunner.gnm1.ann1.HDLM7U Arachis hypogaea HOM05D005359 ORTHO05D006431 1.2e-26 125.2 71 78.9
arahy.Tifrunner.gnm1.ann1.X0Q2J1 Arachis hypogaea HOM05D005359 ORTHO05D006431 1.2e-26 125.2 71 78.9
MSTRG.27843 Avicennia marina HOM05D005359 ORTHO05D006431 1.9e-19 101.3 102 54.9
Oeu056678.1 Olea europaea HOM05D005359 ORTHO05D006431 9.3e-19 99.0 79 62.0
HanXRQChr05g0139821 Helianthus annuus HOM05D001396 ORTHO05D000493 3.5e-10 70.5 237 26.6
HanXRQChr03g0060681 Helianthus annuus HOM05D006588 ORTHO05D008272 3.9e-09 67.0 238 29.0
HanXRQChr03g0060961 Helianthus annuus HOM05D006588 ORTHO05D008272 5.1e-09 66.6 236 28.0
FAN02G0832 Fragaria x ananassa HOM05D000862 ORTHO05D001182 6.7e-09 66.2 238 24.4
FAN02G0884 Fragaria x ananassa HOM05D001477 ORTHO05D001182 6.7e-09 66.2 238 24.4
HanXRQChr03g0060651 Helianthus annuus HOM05D006588 ORTHO05D008272 6.7e-09 66.2 238 29.0
HanXRQChr03g0060671 Helianthus annuus HOM05D006588 ORTHO05D008272 6.7e-09 66.2 238 29.0
Prupe.3G053600 Prunus persica HOM05D001477 ORTHO05D001182 6.7e-09 66.2 276 21.7
Nn5g28221 Nelumbo nucifera HOM05D000051 ORTHO05D000015 4.3e-08 63.5 245 25.7
PGSC0003DMG400018866 Solanum tuberosum HOM05D006683 ORTHO05D008629 4.3e-08 63.5 252 25.8
Dinv40490 Davidia involucrata HOM05D001396 ORTHO05D000493 7.4e-08 62.8 233 26.6
HanXRQChr03g0060631 Helianthus annuus HOM05D006588 ORTHO05D008272 7.4e-08 62.8 229 27.1
MBI05_g43550_MAGBIO Magnolia biondii HOM05D003488 ORTHO05D004214 7.4e-08 62.8 280 24.6
Dinv18997 Davidia involucrata HOM05D001396 ORTHO05D000493 9.7e-08 62.4 249 26.5
SGA_v2.0_scaffold3G01573 Striga asiatica HOM05D001396 ORTHO05D000493 1.3e-07 62.0 238 26.5
Dinv40491 Davidia involucrata HOM05D001396 ORTHO05D000493 2.2e-07 61.2 245 26.5
Gohir.D07G113900 Gossypium hirsutum HOM05D003488 ORTHO05D004214 3.7e-07 60.5 422 23.7
Gorai.001G122200 Gossypium raimondii HOM05D003488 ORTHO05D004214 3.7e-07 60.5 422 23.7
HanXRQChr03g0061101 Helianthus annuus HOM05D006588 ORTHO05D008272 3.7e-07 60.5 238 27.7
Gohir.A07G110300 Gossypium hirsutum HOM05D003488 ORTHO05D004214 4.8e-07 60.1 422 23.7
MBI05_g08793_MAGBIO Magnolia biondii HOM05D003488 ORTHO05D004214 6.3e-07 59.7 280 24.3
CBR_g31165 Chara braunii HOM05D019043 ORTHO05D020397 8.2e-07 59.3 297 24.6
Lsat_1_v5_gn_5_69040 Lactuca sativa HOM05D000051 ORTHO05D000015 8.2e-07 59.3 213 28.6
CAN.G500.55 Capsicum annuum HOM05D006683 ORTHO05D008629 1.1e-06 58.9 290 24.1
Lsat_1_v5_gn_2_37980 Lactuca sativa HOM05D001396 ORTHO05D000493 1.1e-06 58.9 248 25.4
Lsat_1_v5_gn_7_24461 Lactuca sativa HOM05D001396 ORTHO05D000493 1.1e-06 58.9 238 24.4
Nitab4.5_0002398g0060 Nicotiana tabacum HOM05D006683 ORTHO05D008629 2.4e-06 57.8 257 23.7
BcaB03g15699 Brassica carinata HOM05D002909 ORTHO05D000493 4.1e-06 57.0 259 24.3
HanXRQChr05g0142321 Helianthus annuus HOM05D006588 ORTHO05D008272 4.1e-06 57.0 234 26.1
Lsat_1_v5_gn_7_24881 Lactuca sativa HOM05D001396 ORTHO05D000493 5.3e-06 56.6 240 27.5
Thhalv10014018m.g Eutrema salsugineum HOM05D002909 ORTHO05D000493 9.0e-06 55.8 280 25.7
Lsat_1_v5_gn_7_24341 Lactuca sativa HOM05D001396 ORTHO05D000493 9.0e-06 55.8 255 25.5
Peaxi162Scf00179g00923 Petunia axillaris HOM05D000312 ORTHO05D000221 9.0e-06 55.8 146 30.1
Peaxi162Scf00588g01218 Petunia axillaris HOM05D001396 ORTHO05D000493 9.0e-06 55.8 259 24.3
RcHm_v2.0_Chr5g0028201 Rosa chinensis HOM05D000051 ORTHO05D000015 9.0e-06 55.8 435 22.5


User provided reference genes

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