Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G124500 Glycine max HOM05D007012 ORTHO05D008882 1.9e-26 121.7 59 100.0
Glyma.05G166500 Glycine max HOM05D007012 ORTHO05D008882 4.3e-23 110.5 54 98.1
Phvul.002G246900 Phaseolus vulgaris HOM05D007012 ORTHO05D008882 4.3e-23 110.5 54 98.1
Lalb_Chr12g0204651 Lupinus albus HOM05D007012 ORTHO05D008882 6.3e-22 106.7 54 92.6
VMungo0251G0322 Vigna mungo HOM05D007012 ORTHO05D008882 1.8e-21 105.1 52 94.2
arahy.Tifrunner.gnm1.ann1.80D497 Arachis hypogaea HOM05D007012 ORTHO05D008882 4.1e-21 104.0 54 85.2
arahy.Tifrunner.gnm1.ann1.HAVC5G Arachis hypogaea HOM05D007012 ORTHO05D008882 4.1e-21 104.0 54 85.2
CiPaw.09G115600 Carya illinoinensis HOM05D007012 ORTHO05D008882 4.1e-21 104.0 54 87.0
Hma1.2p1_0333F.1_g128270 Hydrangea macrophylla HOM05D007012 ORTHO05D008882 1.5e-20 102.1 54 83.3
Psat7g066160 Pisum sativum HOM05D007012 ORTHO05D008882 1.5e-20 102.1 54 87.0
Manes.14G122800 Manihot esculenta HOM05D007012 ORTHO05D008882 2.0e-20 101.7 54 85.2
Peaxi162Scf00100g01517 Petunia axillaris HOM05D007012 ORTHO05D008882 2.6e-20 101.3 54 83.3
QL05p061226 Quercus lobata HOM05D007012 ORTHO05D008882 2.6e-20 101.3 54 83.3
TPR.G6804 Trifolium pratense HOM05D007012 ORTHO05D008882 2.6e-20 101.3 54 85.2
TWI09G0010 Tripterygium wilfordii HOM05D007012 ORTHO05D008882 2.6e-20 101.3 54 83.3
TWI73G0699 Tripterygium wilfordii HOM05D007012 ORTHO05D008882 4.5e-20 100.5 54 83.3
PGR031G1292 Punica granatum HOM05D007012 ORTHO05D008882 5.9e-20 100.1 54 81.5
Atru.chr10.869 Acer truncatum HOM05D007012 ORTHO05D008882 7.7e-20 99.8 54 83.3
Sed0027179 Sechium edule HOM05D007012 ORTHO05D008882 7.7e-20 99.8 54 81.5
ClCG02G000770 Citrullus lanatus HOM05D007012 ORTHO05D008882 1.0e-19 99.4 54 81.5
MELO3C023274.2 Cucumis melo HOM05D007012 ORTHO05D008882 1.0e-19 99.4 54 81.5
Medtr8g088380 Medicago truncatula HOM05D007012 ORTHO05D008882 1.0e-19 99.4 54 85.2
CAN.G1520.3 Capsicum annuum HOM05D007012 ORTHO05D008882 1.3e-19 99.0 54 81.5
Cc09_g08050 Coffea canephora HOM05D007012 ORTHO05D008882 1.3e-19 99.0 54 81.5
Lj4g0006275 Lotus japonicus HOM05D007012 ORTHO05D008882 1.3e-19 99.0 54 87.0
vmacro03442 Vaccinium macrocarpon HOM05D007012 ORTHO05D008882 1.3e-19 99.0 54 81.5
Cfa000822 Carpinus fangiana HOM05D007012 ORTHO05D008882 2.9e-19 97.8 51 84.3
Dinv35474 Davidia involucrata HOM05D007012 ORTHO05D008882 2.9e-19 97.8 54 79.6
Nitab4.5_0001225g0050 Nicotiana tabacum HOM05D007012 ORTHO05D008882 3.8e-19 97.4 54 79.6
Nitab4.5_0004615g0020 Nicotiana tabacum HOM05D007012 ORTHO05D008882 3.8e-19 97.4 54 79.6
Potri.011G098200 Populus trichocarpa HOM05D007012 ORTHO05D008882 3.8e-19 97.4 54 81.5
CiPaw.10G085800 Carya illinoinensis HOM05D007012 ORTHO05D008882 5.0e-19 97.1 54 81.5
Gohir.D06G213600 Gossypium hirsutum HOM05D007012 ORTHO05D008882 5.0e-19 97.1 54 79.6
Gorai.010G252500 Gossypium raimondii HOM05D007012 ORTHO05D008882 5.0e-19 97.1 54 79.6
HanXRQChr15g0468791 Helianthus annuus HOM05D007012 ORTHO05D008882 5.0e-19 97.1 54 79.6
Rhsim05G0222100 Rhododendron simsii HOM05D007012 ORTHO05D008882 5.0e-19 97.1 54 81.5
Thecc.06G001300 Theobroma cacao HOM05D007012 ORTHO05D008882 5.0e-19 97.1 54 79.6
QL05p061674 Quercus lobata HOM05D007012 ORTHO05D008882 6.5e-19 96.7 54 77.8
GSVIVG01021626001 Vitis vinifera HOM05D007012 ORTHO05D008882 6.5e-19 96.7 54 77.8
CSS0014344 Camellia sinensis var. sinensis HOM05D007012 ORTHO05D008882 8.5e-19 96.3 54 79.6
CsaV3_2G017990 Cucumis sativus L. HOM05D007012 ORTHO05D008882 8.5e-19 96.3 51 82.4
Eucgr.K01942 Eucalyptus grandis HOM05D007012 ORTHO05D008882 8.5e-19 96.3 54 79.6
Gohir.A06G207700 Gossypium hirsutum HOM05D007012 ORTHO05D008882 8.5e-19 96.3 54 79.6
MD10G1253600 Malus domestica HOM05D007012 ORTHO05D008882 1.1e-18 95.9 54 77.8
CANSAT11G0200 Cannabis sativa HOM05D007012 ORTHO05D008882 1.4e-18 95.5 54 77.8
Migut.M01889 Erythranthe guttata HOM05D007012 ORTHO05D008882 1.4e-18 95.5 54 77.8
Migut.M01890 Erythranthe guttata HOM05D007012 ORTHO05D008882 1.4e-18 95.5 54 77.8
RcHm_v2.0_Chr5g0015911 Rosa chinensis HOM05D007012 ORTHO05D008882 1.4e-18 95.5 54 79.6
TAR629G2694 Trochodendron aralioides HOM05D007012 ORTHO05D008882 1.4e-18 95.5 54 79.6
Hma1.2p1_0333F.1_g128260 Hydrangea macrophylla HOM05D007012 ORTHO05D008882 1.9e-18 95.1 50 82.0
MSTRG.7536 Avicennia marina HOM05D007012 ORTHO05D008882 2.5e-18 94.7 54 77.8
Prupe.4G090000 Prunus persica HOM05D007012 ORTHO05D008882 2.5e-18 94.7 54 77.8
HPP92_000966 Vanilla planifolia HOM05D007012 ORTHO05D008882 2.5e-18 94.7 54 81.5
Ciclev10017190m.g Citrus clementina HOM05D007012 ORTHO05D008882 3.2e-18 94.4 54 75.9
FvH4_3g10060 Fragaria vesca HOM05D007012 ORTHO05D008882 4.2e-18 94.0 54 77.8
FAN21G1693 Fragaria x ananassa HOM05D007012 ORTHO05D008882 4.2e-18 94.0 54 77.8
FAN25G0029 Fragaria x ananassa HOM05D007012 ORTHO05D008882 4.2e-18 94.0 54 77.8
Solyc02g069820.3 Solanum lycopersicum HOM05D007012 ORTHO05D008882 4.2e-18 94.0 54 75.9
Sopen02g018980 Solanum pennellii HOM05D007012 ORTHO05D008882 4.2e-18 94.0 54 75.9
PGSC0003DMG400021126 Solanum tuberosum HOM05D007012 ORTHO05D008882 4.2e-18 94.0 54 75.9
Migut.M00621 Erythranthe guttata HOM05D007012 ORTHO05D008882 5.5e-18 93.6 54 75.9
Sed0002894 Sechium edule HOM05D007012 ORTHO05D008882 9.4e-18 92.8 53 77.4
Ah.02g129420 Amaranthus hybridus HOM05D007012 ORTHO05D008882 2.1e-17 91.7 54 74.1
Sabra11G0090900 Salix brachista HOM05D007012 ORTHO05D008882 2.1e-17 91.7 54 77.8
Haze_05817 Corylus avellana HOM05D007012 ORTHO05D008882 2.7e-17 91.3 49 79.6
Lsat_1_v5_gn_1_117760 Lactuca sativa HOM05D007012 ORTHO05D008882 4.6e-17 90.5 54 74.1
Sabra11G0084700 Salix brachista HOM05D007012 ORTHO05D008882 6.1e-17 90.1 54 75.9
AT3G29130 Arabidopsis thaliana HOM05D007012 ORTHO05D008882 7.9e-17 89.7 58 65.5
Oeu034103.1 Olea europaea HOM05D007012 ORTHO05D008882 7.9e-17 89.7 51 80.4
unitig_748.g7806 Utricularia gibba HOM05D007012 ORTHO05D008882 1.0e-16 89.4 54 75.9
Aqoxy1G01570 Aquilegia oxysepala HOM05D007012 ORTHO05D008882 1.4e-16 89.0 51 76.5
FAN11G2674 Fragaria x ananassa HOM05D007012 ORTHO05D008882 1.8e-16 88.6 51 76.5
FAN16G3160 Fragaria x ananassa HOM05D007012 ORTHO05D008882 1.8e-16 88.6 51 76.5
Actinidia03306 Actinidia chinensis HOM05D007012 ORTHO05D008882 2.3e-16 88.2 54 70.4
ECA248G1541 Erigeron canadensis HOM05D007012 ORTHO05D008882 2.3e-16 88.2 54 74.1
PSO541G1654 Papaver somniferum HOM05D007012 ORTHO05D008882 2.3e-16 88.2 54 74.1
AL5G19030 Arabidopsis lyrata HOM05D007012 ORTHO05D008882 3.0e-16 87.8 54 72.2
PSO675G5463 Papaver somniferum HOM05D007012 ORTHO05D008882 3.0e-16 87.8 54 72.2
CDE08G0050 Ceratophyllum demersum HOM05D007012 ORTHO05D008882 3.9e-16 87.4 54 70.4
CDE08G0396 Ceratophyllum demersum HOM05D007012 ORTHO05D008882 3.9e-16 87.4 54 70.4
SEGI_30962 Sequoiadendron giganteum HOM05D007012 ORTHO05D008882 3.9e-16 87.4 54 68.5
EL10Ac6g13254 Beta vulgaris HOM05D007012 ORTHO05D008882 5.1e-16 87.0 54 68.5
BcaC06g30880 Brassica carinata HOM05D007012 ORTHO05D008882 5.1e-16 87.0 54 70.4
BcaC06g33671 Brassica carinata HOM05D007012 ORTHO05D008882 5.1e-16 87.0 54 70.4
C07p38010 Brassica napus HOM05D007012 ORTHO05D008882 5.1e-16 87.0 54 70.4
BolC7t44322H Brassica oleracea HOM05D007012 ORTHO05D008882 5.1e-16 87.0 54 70.4
Carub.0005s0786 Capsella rubella HOM05D007012 ORTHO05D008882 5.1e-16 87.0 54 68.5
AUR62005835 Chenopodium quinoa HOM05D007012 ORTHO05D008882 5.1e-16 87.0 54 68.5
AUR62032828 Chenopodium quinoa HOM05D007012 ORTHO05D008882 5.1e-16 87.0 54 68.5
Migut.M00618 Erythranthe guttata HOM05D007012 ORTHO05D008882 5.1e-16 87.0 53 73.6
SEGI_05812 Sequoiadendron giganteum HOM05D007012 ORTHO05D008882 5.1e-16 87.0 55 67.3
SalBow8G4607 Salvia bowleyana HOM05D007012 ORTHO05D008882 6.7e-16 86.7 51 72.5
SGA_v2.0_scaffold1G00245 Striga asiatica HOM05D007012 ORTHO05D008882 6.7e-16 86.7 54 70.4
Sc24g0001360 Simmondsia chinensis HOM05D007012 ORTHO05D008882 8.8e-16 86.3 54 70.4
MD05G1273800 Malus domestica HOM05D007012 ORTHO05D008882 1.1e-15 85.9 54 72.2
Hund20768 Selenicereus undatus HOM05D007012 ORTHO05D008882 1.1e-15 85.9 54 68.5
Thhalv10005148m.g Eutrema salsugineum HOM05D007012 ORTHO05D008882 1.5e-15 85.5 54 68.5
Sp2g17760 Schrenkiella parvula HOM05D007012 ORTHO05D008882 1.5e-15 85.5 54 68.5
Os03g0640400 Oryza sativa ssp. japonica HOM05D007012 ORTHO05D008882 1.9e-15 85.1 54 70.4
CARHR152280 Cardamine hirsuta HOM05D007012 ORTHO05D008882 2.5e-15 84.7 54 66.7
A06p40130 Brassica napus HOM05D007012 ORTHO05D008882 3.3e-15 84.3 54 68.5
Zm00001eb218740 Zea mays HOM05D007012 ORTHO05D008882 3.3e-15 84.3 54 66.7
THA.LOC104805486 Tarenaya hassleriana HOM05D007012 ORTHO05D008882 4.3e-15 84.0 54 66.7
Aa31LG2G4090 Aethionema arabicum HOM05D007012 ORTHO05D008882 2.2e-14 81.6 54 63.0
ATR0165G051 Amborella trichopoda HOM05D007012 ORTHO05D008882 3.7e-14 80.9 50 72.0
AagrBONN_evm.TU.Sc2ySwM_117.2140 Anthoceros agrestis HOM05D007012 ORTHO05D008882 3.7e-14 80.9 55 63.6
Pp3c17_18250 Physcomitrium patens HOM05D007012 ORTHO05D008882 3.7e-14 80.9 54 64.8
BraA06t26928Z Brassica rapa HOM05D007012 ORTHO05D008882 4.8e-14 80.5 51 68.6
AagrBONN_evm.TU.Sc2ySwM_368.2441 Anthoceros agrestis HOM05D007012 ORTHO05D008882 6.9e-13 76.6 54 61.1
Mapoly0001s0437 Marchantia polymorpha HOM05D007012 ORTHO05D008882 9.1e-13 76.3 54 59.3
CBR_g52649 Chara braunii HOM05D007012 ORTHO05D008882 3.4e-12 74.3 54 57.4


User provided reference genes

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