Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G118500 Glycine max HOM05D005059 ORTHO05D004248 1.1e-44 183.0 94 100.0
Phvul.002G241108 Phaseolus vulgaris HOM05D005059 ORTHO05D004248 4.6e-35 151.0 97 83.5
Glyma.05G161100 Glycine max HOM05D005059 ORTHO05D004248 8.7e-34 146.7 97 82.5
Glyma.13G226600 Glycine max HOM05D005059 ORTHO05D004248 4.8e-24 114.4 95 65.3
Psat7g068640 Pisum sativum HOM05D005059 ORTHO05D004248 8.2e-24 113.6 102 62.7
TPR.G6728 Trifolium pratense HOM05D005059 ORTHO05D004248 8.2e-24 113.6 101 58.4
Medtr2g016800 Medicago truncatula HOM05D005059 ORTHO05D004248 1.8e-23 112.5 104 60.6
Medtr8g087390 Medicago truncatula HOM05D005059 ORTHO05D004248 1.8e-23 112.5 101 60.4
Ca_00473_v3 Cicer arietinum L. HOM05D005059 ORTHO05D004248 5.3e-23 110.9 98 64.3
Lj4g0014521 Lotus japonicus HOM05D005059 ORTHO05D004248 9.0e-23 110.2 99 64.6
Phvul.006G173000 Phaseolus vulgaris HOM05D005059 ORTHO05D004248 9.0e-23 110.2 95 65.3
arahy.Tifrunner.gnm1.ann1.YNVN02 Arachis hypogaea HOM05D005059 ORTHO05D004248 2.0e-22 109.0 100 62.0
Ca_17896_v3 Cicer arietinum L. HOM05D005059 ORTHO05D004248 2.0e-22 109.0 94 60.6
Haze_06169 Corylus avellana HOM05D005059 ORTHO05D004248 2.0e-22 109.0 98 64.3
Lj6g0009726 Lotus japonicus HOM05D005059 ORTHO05D004248 3.4e-22 108.2 100 64.0
QL05p049931 Quercus lobata HOM05D005059 ORTHO05D004248 7.6e-22 107.1 95 61.1
TAR626G0600 Trochodendron aralioides HOM05D005059 ORTHO05D004248 1.0e-21 106.7 95 62.1
CiPaw.09G073100 Carya illinoinensis HOM05D005059 ORTHO05D004248 1.7e-21 105.9 97 59.8
Psat1g194640 Pisum sativum HOM05D005059 ORTHO05D004248 2.9e-21 105.1 96 57.3
arahy.Tifrunner.gnm1.ann1.YXRF57 Arachis hypogaea HOM05D005059 ORTHO05D004248 3.8e-21 104.8 103 59.2
PGSC0003DMG400028485 Solanum tuberosum HOM05D005059 ORTHO05D004248 1.9e-20 102.4 95 62.1
Nn6g34461 Nelumbo nucifera HOM05D005059 ORTHO05D004248 9.3e-20 100.1 96 57.3
Cfa000656 Carpinus fangiana HOM05D005059 ORTHO05D004248 1.2e-19 99.8 99 59.6
Sopen02g021130 Solanum pennellii HOM05D005059 ORTHO05D004248 4.6e-19 97.8 85 61.2
TAR624G0872 Trochodendron aralioides HOM05D005059 ORTHO05D004248 4.6e-19 97.8 94 56.4
Lalb_Chr15g0086331 Lupinus albus HOM05D005059 ORTHO05D004248 1.0e-18 96.7 100 57.0
TAR627G0439 Trochodendron aralioides HOM05D005059 ORTHO05D004248 1.3e-18 96.3 95 58.9
Nn3g21078 Nelumbo nucifera HOM05D005059 ORTHO05D004248 1.8e-18 95.9 89 62.9
Prupe.4G067000 Prunus persica HOM05D005059 ORTHO05D004248 1.8e-18 95.9 98 55.1
CAN.G411.50 Capsicum annuum HOM05D005059 ORTHO05D004248 2.3e-18 95.5 95 60.0
MBI06_g16696_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 3.9e-18 94.7 88 61.4
RcHm_v2.0_Chr5g0011661 Rosa chinensis HOM05D005059 ORTHO05D004248 8.7e-18 93.6 100 54.0
MD10G1275500 Malus domestica HOM05D005059 ORTHO05D004248 1.1e-17 93.2 98 56.1
CSS0038855 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 1.9e-17 92.4 95 56.8
FAN16G0464 Fragaria x ananassa HOM05D005059 ORTHO05D004248 7.4e-17 90.5 100 54.0
MD00G1009200 Malus domestica HOM05D005059 ORTHO05D004248 7.4e-17 90.5 97 56.7
MD00G1221100 Malus domestica HOM05D005059 ORTHO05D004248 7.4e-17 90.5 97 56.7
Rhsim13G0187800 Rhododendron simsii HOM05D005059 ORTHO05D004248 7.4e-17 90.5 98 54.1
DCAR_005145 Daucus carota HOM05D005059 ORTHO05D004248 9.7e-17 90.1 101 56.4
TAR624G0770 Trochodendron aralioides HOM05D005059 ORTHO05D004248 9.7e-17 90.1 90 54.4
FAN21G0043 Fragaria x ananassa HOM05D005059 ORTHO05D004248 1.6e-16 89.4 100 53.0
FAN25G1124 Fragaria x ananassa HOM05D005059 ORTHO05D004248 1.6e-16 89.4 100 53.0
FvH4_3g07300 Fragaria vesca HOM05D005059 ORTHO05D004248 2.2e-16 89.0 100 53.0
SalBow7G3765 Salvia bowleyana HOM05D005059 ORTHO05D004248 3.7e-16 88.2 97 52.6
Glyma.15G085800 Glycine max HOM05D005059 ORTHO05D004248 4.8e-16 87.8 94 55.3
Lalb_Chr18g0054771 Lupinus albus HOM05D005059 ORTHO05D004248 4.8e-16 87.8 75 62.7
Oeu060173.1 Olea europaea HOM05D005059 ORTHO05D004248 4.8e-16 87.8 98 51.0
Thecc.06G165400 Theobroma cacao HOM05D005059 ORTHO05D004248 4.8e-16 87.8 96 56.2
Migut.H01411 Erythranthe guttata HOM05D005059 ORTHO05D004248 6.3e-16 87.4 92 52.2
Hma1.2p1_0113F.1_g055120 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 6.3e-16 87.4 91 56.0
Cc02_g15600 Coffea canephora HOM05D005059 ORTHO05D004248 8.2e-16 87.0 98 54.1
FAN11G2282 Fragaria x ananassa HOM05D005059 ORTHO05D004248 8.2e-16 87.0 100 52.0
CSS0000215 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 1.1e-15 86.7 98 54.1
DCAR_027980 Daucus carota HOM05D005059 ORTHO05D004248 1.1e-15 86.7 102 51.0
Lsat_1_v5_gn_7_25601 Lactuca sativa HOM05D005059 ORTHO05D004248 1.1e-15 86.7 89 58.4
Oeu040922.1 Olea europaea HOM05D005059 ORTHO05D004248 2.4e-15 85.5 88 54.5
Potri.004G061300 Populus trichocarpa HOM05D005059 ORTHO05D004248 2.4e-15 85.5 107 49.5
Oeu043118.1 Olea europaea HOM05D005059 ORTHO05D004248 4.1e-15 84.7 88 55.7
TWI53G1149 Tripterygium wilfordii HOM05D005059 ORTHO05D004248 4.1e-15 84.7 100 53.0
PGR042G3020 Punica granatum HOM05D005059 ORTHO05D004248 6.9e-15 84.0 99 52.5
CiPaw.10G061800 Carya illinoinensis HOM05D005059 ORTHO05D004248 9.0e-15 83.6 98 54.1
Dinv32337 Davidia involucrata HOM05D005059 ORTHO05D004248 1.2e-14 83.2 86 54.7
Sabra04G0040600 Salix brachista HOM05D005059 ORTHO05D004248 1.5e-14 82.8 105 50.5
Ciclev10018148m.g Citrus clementina HOM05D005059 ORTHO05D004248 2.0e-14 82.4 100 52.0
Aqoxy4G00224 Aquilegia oxysepala HOM05D005059 ORTHO05D004248 4.5e-14 81.3 98 52.0
COL.COLO4_31233 Corchorus olitorius HOM05D005059 ORTHO05D004248 4.5e-14 81.3 96 50.0
Manes.16G042800 Manihot esculenta HOM05D005059 ORTHO05D004248 4.5e-14 81.3 98 48.0
Dinv18371 Davidia involucrata HOM05D000126 ORTHO05D000085 5.9e-14 80.9 91 53.8
Oeu060178.1 Olea europaea HOM05D005059 ORTHO05D004248 5.9e-14 80.9 96 44.8
Atru.chr10.1568 Acer truncatum HOM05D005059 ORTHO05D004248 7.7e-14 80.5 84 57.1
MSTRG.13233 Avicennia marina HOM05D005059 ORTHO05D004248 1.3e-13 79.7 87 49.4
TPR.G4530 Trifolium pratense HOM05D005059 ORTHO05D004248 2.9e-13 78.6 59 66.1
Gohir.A05G153400 Gossypium hirsutum HOM05D005059 ORTHO05D004248 5.0e-13 77.8 98 52.0
Rhsim13G0187700 Rhododendron simsii HOM05D005059 ORTHO05D004248 5.0e-13 77.8 97 49.5
SalBow8G0022 Salvia bowleyana HOM05D005059 ORTHO05D004248 6.5e-13 77.4 61 63.9
Manes.17G059300 Manihot esculenta HOM05D005059 ORTHO05D004248 8.5e-13 77.0 103 47.6
Potri.011G070500 Populus trichocarpa HOM05D005059 ORTHO05D004248 1.4e-12 76.3 105 46.7
TAR629G2882 Trochodendron aralioides HOM05D005059 ORTHO05D004248 1.9e-12 75.9 82 51.2
Gohir.D05G156000 Gossypium hirsutum HOM05D005059 ORTHO05D004248 2.5e-12 75.5 98 51.0
Gorai.009G160500 Gossypium raimondii HOM05D005059 ORTHO05D004248 2.5e-12 75.5 98 51.0
Dinv12752 Davidia involucrata HOM05D005059 ORTHO05D004248 5.5e-12 74.3 52 73.1
MBI07_g00460_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 1.6e-11 72.8 67 61.2
Sabra11G0055200 Salix brachista HOM05D005059 ORTHO05D004248 1.6e-11 72.8 102 45.1
Manes.03G100250 Manihot esculenta HOM05D008890 ORTHO05D004248 2.1e-11 72.4 97 46.4
SGA_v2.0_scaffold1G00085 Striga asiatica HOM05D005059 ORTHO05D004248 2.1e-11 72.4 96 44.8
Lalb_Chr13g0295291 Lupinus albus HOM05D005059 ORTHO05D004248 4.6e-11 71.2 71 62.0
TAR627G0061 Trochodendron aralioides HOM05D005059 ORTHO05D004248 7.9e-11 70.5 84 51.2
DCAR_027979 Daucus carota HOM05D005059 ORTHO05D004248 1.0e-10 70.1 108 43.5
Eucgr.D00466 Eucalyptus grandis HOM05D005059 ORTHO05D004248 1.8e-10 69.3 93 48.4
CSS0027903 Camellia sinensis var. sinensis HOM05D008890 ORTHO05D004248 2.3e-10 68.9 96 49.0
Gorai.010G161500 Gossypium raimondii HOM05D005059 ORTHO05D004248 2.3e-10 68.9 100 49.0
Dinv15004 Davidia involucrata HOM05D005059 ORTHO05D004248 3.0e-10 68.6 73 54.8
ClCG01G023900 Citrullus lanatus HOM05D005059 ORTHO05D004248 3.9e-10 68.2 89 49.4
Rhsim04G0027000 Rhododendron simsii HOM05D002453 ORTHO05D008746 5.1e-10 67.8 69 52.2
Sed0013946 Sechium edule HOM05D005059 ORTHO05D004248 5.1e-10 67.8 89 52.8
Hma1.2p1_1016F.1_g248040 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 6.7e-10 67.4 94 43.6
Gohir.D06G138900 Gossypium hirsutum HOM05D005059 ORTHO05D004248 8.8e-10 67.0 100 49.0
CSS0004272 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 2.0e-09 65.9 88 46.6
AT1G29290 Arabidopsis thaliana HOM05D005059 ORTHO05D004248 2.5e-09 65.5 99 43.4
C08p17660 Brassica napus HOM05D009829 ORTHO05D012418 2.5e-09 65.5 87 49.4
BolC8t49391H Brassica oleracea HOM05D009829 ORTHO05D012418 2.5e-09 65.5 87 49.4
Migut.M01008 Erythranthe guttata HOM05D005059 ORTHO05D004248 2.5e-09 65.5 99 45.5
AL1G43080 Arabidopsis lyrata HOM05D005059 ORTHO05D004248 3.3e-09 65.1 99 42.4
BcaB03g13023 Brassica carinata HOM05D009829 ORTHO05D012418 3.3e-09 65.1 93 46.2
BcaC07g38826 Brassica carinata HOM05D009829 ORTHO05D012418 3.3e-09 65.1 87 50.6
A08p31200 Brassica napus HOM05D009829 ORTHO05D012418 3.3e-09 65.1 87 49.4
Actinidia18806 Actinidia chinensis HOM05D005059 ORTHO05D004248 4.3e-09 64.7 71 53.5
AUR62039479 Chenopodium quinoa HOM05D005059 ORTHO05D004248 7.4e-09 63.9 63 58.7
MSTRG.7430 Avicennia marina HOM05D005059 ORTHO05D004248 1.3e-08 63.2 96 40.6
BraA08t35043Z Brassica rapa HOM05D009829 ORTHO05D012418 1.3e-08 63.2 87 48.3
Gohir.A06G133800 Gossypium hirsutum HOM05D005059 ORTHO05D004248 1.3e-08 63.2 100 48.0
Oeu061362.1 Olea europaea HOM05D005059 ORTHO05D004248 2.2e-08 62.4 87 47.1
Thhalv10009335m.g Eutrema salsugineum HOM05D009829 ORTHO05D012418 2.8e-08 62.0 103 47.6
BcaB07g32517 Brassica carinata HOM05D005059 ORTHO05D004248 4.8e-08 61.2 99 41.4
CDE02G4707 Ceratophyllum demersum HOM05D001096 ORTHO05D001629 4.8e-08 61.2 87 43.7
PSO339G2616 Papaver somniferum HOM05D005059 ORTHO05D004248 4.8e-08 61.2 107 43.0
BcaB03g13892 Brassica carinata HOM05D005059 ORTHO05D004248 6.3e-08 60.8 99 41.4
BcaC05g26955 Brassica carinata HOM05D005059 ORTHO05D004248 6.3e-08 60.8 99 40.4
C05p28050 Brassica napus HOM05D005059 ORTHO05D004248 6.3e-08 60.8 99 40.4
BolC5t31533H Brassica oleracea HOM05D005059 ORTHO05D004248 6.3e-08 60.8 99 40.4
CARHR017460 Cardamine hirsuta HOM05D009829 ORTHO05D012418 8.2e-08 60.5 99 43.4
CARHR028610 Cardamine hirsuta HOM05D005059 ORTHO05D004248 8.2e-08 60.5 99 40.4
Thhalv10009585m.g Eutrema salsugineum HOM05D005059 ORTHO05D004248 8.2e-08 60.5 51 62.7
Actinidia12585 Actinidia chinensis HOM05D005059 ORTHO05D004248 1.1e-07 60.1 73 45.2
BcaB03g12151 Brassica carinata HOM05D005059 ORTHO05D004248 1.1e-07 60.1 51 60.8
A09p37060 Brassica napus HOM05D005059 ORTHO05D004248 1.1e-07 60.1 99 39.4
BraA09t39221Z Brassica rapa HOM05D005059 ORTHO05D004248 1.1e-07 60.1 99 39.4
THA.LOC104820608 Tarenaya hassleriana HOM05D005059 ORTHO05D004248 1.1e-07 60.1 66 54.5
BcaC07g41449 Brassica carinata HOM05D009829 ORTHO05D012418 1.4e-07 59.7 90 47.8
Thecc.07G128100 Theobroma cacao HOM05D008890 ORTHO05D004248 1.4e-07 59.7 95 44.2
Nitab4.5_0000788g0070 Nicotiana tabacum HOM05D005059 ORTHO05D004248 1.8e-07 59.3 91 45.1
Carub.0001s1668 Capsella rubella HOM05D009829 ORTHO05D012418 2.4e-07 58.9 94 44.7
Sp1g15090 Schrenkiella parvula HOM05D009829 ORTHO05D012418 2.4e-07 58.9 103 44.7
Sp1g25220 Schrenkiella parvula HOM05D005059 ORTHO05D004248 2.4e-07 58.9 97 40.2
C08p44170 Brassica napus HOM05D009829 ORTHO05D000015 3.1e-07 58.5 78 47.4
BolC8t51964H Brassica oleracea HOM05D009829 ORTHO05D000015 3.1e-07 58.5 78 47.4
Ah.14g086980 Amaranthus hybridus HOM05D005059 ORTHO05D004248 4.1e-07 58.2 61 57.4
AT1G16950 Arabidopsis thaliana HOM05D009829 ORTHO05D012418 4.1e-07 58.2 100 40.0
A09p60670 Brassica napus HOM05D009829 ORTHO05D000015 4.1e-07 58.2 78 47.4
BraA09t41438Z Brassica rapa HOM05D009829 ORTHO05D000015 4.1e-07 58.2 78 47.4
A07p10740 Brassica napus HOM05D005059 ORTHO05D004248 5.3e-07 57.8 97 39.2
BraA07t28869Z Brassica rapa HOM05D005059 ORTHO05D004248 5.3e-07 57.8 97 39.2
AL1G29130 Arabidopsis lyrata HOM05D009829 ORTHO05D012418 6.9e-07 57.4 100 40.0
Thecc.07G128300 Theobroma cacao HOM05D008890 ORTHO05D004248 6.9e-07 57.4 87 40.2
Cpa.g.sc77.31 Carica papaya HOM05D067836 ORTHO05D043529 1.2e-06 56.6 95 42.1
QL08p025461 Quercus lobata HOM05D008890 ORTHO05D004248 1.5e-06 56.2 87 40.2
EL10Ac4g08366 Beta vulgaris HOM05D005059 ORTHO05D004248 2.0e-06 55.8 56 58.9
Gohir.A01G049200 Gossypium hirsutum HOM05D008890 ORTHO05D004248 2.0e-06 55.8 96 37.5
BcaC06g35423 Brassica carinata HOM05D005059 ORTHO05D004248 2.6e-06 55.5 98 38.8
C07p16340 Brassica napus HOM05D005059 ORTHO05D004248 2.6e-06 55.5 98 38.8
BolC7t42128H Brassica oleracea HOM05D005059 ORTHO05D004248 2.6e-06 55.5 98 38.8
Hma1.2p1_0373F.1_g138420 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 2.6e-06 55.5 58 56.9
BcaB02g06660 Brassica carinata HOM05D009829 ORTHO05D012418 3.4e-06 55.1 96 41.7
BcaB02g06661 Brassica carinata HOM05D009829 ORTHO05D012418 3.4e-06 55.1 96 41.7
Gohir.D01G040200 Gossypium hirsutum HOM05D008890 ORTHO05D004248 3.4e-06 55.1 95 38.9
MELO3C035718.2 Cucumis melo HOM05D005059 ORTHO05D004248 4.5e-06 54.7 90 40.0
Gorai.002G049900 Gossypium raimondii HOM05D008890 ORTHO05D004248 5.9e-06 54.3 96 37.5
Nitab4.5_0006663g0010 Nicotiana tabacum HOM05D005059 ORTHO05D004248 5.9e-06 54.3 90 42.2
BcaC01g00093 Brassica carinata HOM05D005059 ORTHO05D004248 7.7e-06 53.9 51 56.9
A08p25180 Brassica napus HOM05D005059 ORTHO05D004248 7.7e-06 53.9 51 56.9
C03p75700 Brassica napus HOM05D005059 ORTHO05D004248 7.7e-06 53.9 51 56.9
BolC3t19830H Brassica oleracea HOM05D005059 ORTHO05D004248 7.7e-06 53.9 51 56.9
BraA08t34472Z Brassica rapa HOM05D005059 ORTHO05D004248 7.7e-06 53.9 51 56.9
Gorai.002G049800 Gossypium raimondii HOM05D008890 ORTHO05D004248 7.7e-06 53.9 96 36.5


User provided reference genes

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