Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G117600 Glycine max HOM05D006665 ORTHO05D008327 1.2e-209 733.0 385 100.0
Glyma.05G160032 Glycine max HOM05D006665 ORTHO05D008327 1.2e-201 706.4 385 96.1
Phvul.002G240300 Phaseolus vulgaris HOM05D006665 ORTHO05D008327 9.9e-193 676.8 385 90.9
Lalb_Chr13g0295211 Lupinus albus HOM05D006665 ORTHO05D008327 4.8e-163 578.2 374 73.3
Medtr8g086605 Medicago truncatula HOM05D006665 ORTHO05D008327 1.3e-152 543.5 381 70.3
TPR.G6756 Trifolium pratense HOM05D006665 ORTHO05D008327 8.5e-152 540.8 381 69.8
Lj4g0005276 Lotus japonicus HOM05D000074 ORTHO05D008327 2.7e-150 535.8 388 68.8
Cfa000642 Carpinus fangiana HOM05D006665 ORTHO05D008327 7.2e-143 511.1 375 65.1
arahy.Tifrunner.gnm1.ann1.L41MS4 Arachis hypogaea HOM05D006665 ORTHO05D008327 2.3e-141 506.1 375 69.6
GSVIVG01021249001 Vitis vinifera HOM05D006665 ORTHO05D008327 1.3e-139 500.4 373 64.1
Duzib235G0558 Durio zibethinus HOM05D006665 ORTHO05D008327 1.2e-137 493.8 374 64.2
arahy.Tifrunner.gnm1.ann1.UF726L Arachis hypogaea HOM05D006665 ORTHO05D008327 3.5e-137 492.3 369 69.9
QL05p048519 Quercus lobata HOM05D006665 ORTHO05D008327 1.7e-136 490.0 376 63.0
Eucgr.E04353 Eucalyptus grandis HOM05D006665 ORTHO05D008327 8.5e-136 487.6 377 62.9
Thecc.06G166800 Theobroma cacao HOM05D006665 ORTHO05D008327 1.5e-135 486.9 374 62.6
Eucgr.E02766 Eucalyptus grandis HOM05D006665 ORTHO05D008327 2.5e-135 486.1 377 62.6
CANSAT80G2447 Cannabis sativa HOM05D000074 ORTHO05D000220 5.5e-135 485.0 373 61.4
TWI73G0293 Tripterygium wilfordii HOM05D006665 ORTHO05D008327 5.5e-135 485.0 372 61.3
THA.LOC104812882 Tarenaya hassleriana HOM05D006665 ORTHO05D008327 9.4e-135 484.2 377 62.1
Gohir.D10G035900 Gossypium hirsutum HOM05D006665 ORTHO05D008327 1.4e-133 480.3 377 60.7
Gorai.011G037800 Gossypium raimondii HOM05D006665 ORTHO05D008327 1.4e-133 480.3 376 60.6
PSO170G0566 Papaver somniferum HOM05D000074 ORTHO05D000220 5.2e-133 478.4 384 59.9
CiPaw.09G072200 Carya illinoinensis HOM05D006665 ORTHO05D008327 1.5e-132 476.9 375 63.2
Nn3g21119 Nelumbo nucifera HOM05D006665 ORTHO05D008327 1.5e-132 476.9 378 60.6
Gohir.A10G035200 Gossypium hirsutum HOM05D006665 ORTHO05D008327 2.6e-132 476.1 376 60.4
CSS0008142 Camellia sinensis var. sinensis HOM05D006665 ORTHO05D008327 4.4e-132 475.3 372 61.8
TAR627G0088 Trochodendron aralioides HOM05D006665 ORTHO05D008327 4.4e-132 475.3 377 60.2
Ciclev10015641m.g Citrus clementina HOM05D006665 ORTHO05D008327 9.7e-132 474.2 375 61.3
Prupe.4G065800 Prunus persica HOM05D006665 ORTHO05D008327 9.7e-132 474.2 377 60.7
Manes.17G058400 Manihot esculenta HOM05D006665 ORTHO05D008327 1.3e-131 473.8 372 61.0
MD05G1296500 Malus domestica HOM05D006665 ORTHO05D008327 3.7e-131 472.2 376 60.9
PGR042G0915 Punica granatum HOM05D006665 ORTHO05D008327 4.8e-131 471.9 385 58.4
CARHR176220 Cardamine hirsuta HOM05D006665 ORTHO05D008327 5.3e-130 468.4 375 60.0
Cc02_g15490 Coffea canephora HOM05D006665 ORTHO05D008327 7.0e-130 468.0 375 63.2
Sp2g10670 Schrenkiella parvula HOM05D006665 ORTHO05D008327 9.1e-130 467.6 375 59.7
COL.COLO4_31251 Corchorus olitorius HOM05D006665 ORTHO05D008327 1.2e-129 467.2 393 58.3
CsaV3_1G033140 Cucumis sativus L. HOM05D006665 ORTHO05D008327 1.2e-129 467.2 374 58.8
Carub.0008s0223 Capsella rubella HOM05D006665 ORTHO05D008327 3.5e-129 465.7 376 61.7
Potri.011G069700 Populus trichocarpa HOM05D006665 ORTHO05D008327 3.8e-128 462.2 376 57.4
Sed0010934 Sechium edule HOM05D006665 ORTHO05D008327 3.8e-128 462.2 371 59.8
AL8G12850 Arabidopsis lyrata HOM05D006665 ORTHO05D008327 1.1e-127 460.7 376 59.0
RcHm_v2.0_Chr5g0011451 Rosa chinensis HOM05D006665 ORTHO05D008327 2.5e-127 459.5 377 58.9
Sabra11G0053800 Salix brachista HOM05D006665 ORTHO05D008327 2.5e-127 459.5 376 57.4
AT5G45760 Arabidopsis thaliana HOM05D006665 ORTHO05D008327 5.5e-127 458.4 379 58.0
Aqoxy4G00257 Aquilegia oxysepala HOM05D006665 ORTHO05D008327 7.2e-127 458.0 377 56.8
FvH4_1g07520 Fragaria vesca HOM05D006665 ORTHO05D008327 9.4e-127 457.6 377 58.4
FAN23G0824 Fragaria x ananassa HOM05D006665 ORTHO05D008327 9.4e-127 457.6 377 58.4
HanXRQChr15g0480791 Helianthus annuus HOM05D006665 ORTHO05D008327 9.4e-127 457.6 374 59.6
Dinv32346 Davidia involucrata HOM05D006665 ORTHO05D008327 2.1e-126 456.4 374 60.4
MBI07_g09544_MAGBIO Magnolia biondii HOM05D006665 ORTHO05D008327 4.7e-126 455.3 380 59.7
FAN26G0384 Fragaria x ananassa HOM05D006665 ORTHO05D008327 6.1e-126 454.9 377 57.8
A09p21920 Brassica napus HOM05D006665 ORTHO05D008327 1.4e-125 453.8 369 58.5
C09p28090 Brassica napus HOM05D006665 ORTHO05D008327 1.8e-125 453.4 372 59.7
FAN19G1242 Fragaria x ananassa HOM05D006665 ORTHO05D008327 8.8e-125 451.1 378 57.9
MSTRG.7424 Avicennia marina HOM05D006665 ORTHO05D008327 2.0e-124 449.9 373 57.9
BolC9t55679H Brassica oleracea HOM05D006665 ORTHO05D008327 2.6e-124 449.5 369 59.3
DCAR_005186 Daucus carota HOM05D006665 ORTHO05D008327 7.5e-124 448.0 375 58.9
ECA236G1698 Erigeron canadensis HOM05D000074 ORTHO05D000220 6.3e-123 444.9 366 57.7
BraA09t37795Z Brassica rapa HOM05D006665 ORTHO05D008327 1.6e-121 440.3 359 58.5
PGSC0003DMG400028425 Solanum tuberosum HOM05D006665 ORTHO05D008327 2.0e-121 439.9 374 56.7
Thhalv10000923m.g Eutrema salsugineum HOM05D006665 ORTHO05D008327 2.7e-121 439.5 400 56.8
BcaB07g30869 Brassica carinata HOM05D006665 ORTHO05D008327 5.9e-121 438.3 367 56.9
BcaC04g21745 Brassica carinata HOM05D006665 ORTHO05D008327 7.7e-121 438.0 361 59.3
Nitab4.5_0008526g0030 Nicotiana tabacum HOM05D006665 ORTHO05D008327 1.0e-120 437.6 375 60.8
Sopen02g021210 Solanum pennellii HOM05D006665 ORTHO05D008327 5.0e-120 435.3 374 55.9
Solyc02g072230.3 Solanum lycopersicum HOM05D006665 ORTHO05D008327 6.5e-120 434.9 374 55.6
Sc05g0006960 Simmondsia chinensis HOM05D006665 ORTHO05D008327 1.5e-119 433.7 371 56.3
Lj2C318T4 Lonicera japonica HOM05D006665 ORTHO05D008327 9.5e-119 431.0 374 57.0
Nitab4.5_0000437g0180 Nicotiana tabacum HOM05D006665 ORTHO05D008327 5.2e-117 425.2 381 55.9
Migut.M01013 Erythranthe guttata HOM05D006665 ORTHO05D008327 1.2e-116 424.1 374 54.8
ClCG03G007500 Citrullus lanatus HOM05D000074 ORTHO05D000220 2.2e-115 419.9 369 55.6
FAN26G1216 Fragaria x ananassa HOM05D006665 ORTHO05D008327 1.4e-114 417.2 377 54.9
Aa31LG9G7310 Aethionema arabicum HOM05D006665 ORTHO05D008327 1.2e-113 414.1 380 55.0
Sabra11G0057300 Salix brachista HOM05D000074 ORTHO05D000220 1.2e-113 414.1 351 55.6
EL10Ac8g20571 Beta vulgaris HOM05D006665 ORTHO05D008327 4.4e-108 395.6 374 53.7
Peaxi162Scf00371g00319 Petunia axillaris HOM05D006665 ORTHO05D008327 5.7e-108 395.2 372 53.8
AUR62027710 Chenopodium quinoa HOM05D006665 ORTHO05D008327 1.6e-105 387.1 365 52.6
Os01g0205100 Oryza sativa ssp. japonica HOM05D006665 ORTHO05D008327 1.6e-105 387.1 375 50.9
Actinidia07650 Actinidia chinensis HOM05D006665 ORTHO05D008327 3.3e-95 352.8 238 68.1
VMungo0251G1318 Vigna mungo HOM05D006665 ORTHO05D008327 1.5e-92 344.0 219 88.6
SEGI_17628 Sequoiadendron giganteum HOM05D006665 ORTHO05D008327 1.2e-89 334.3 381 44.4
Ah.14g087040 Amaranthus hybridus HOM05D006665 ORTHO05D008327 1.3e-88 330.9 395 45.8
SalBow8G2667 Salvia bowleyana HOM05D000074 ORTHO05D000220 1.3e-88 330.9 390 46.2
ATR0012G051 Amborella trichopoda HOM05D006665 ORTHO05D008327 1.1e-85 321.2 313 52.4
Pp3c18_2320 Physcomitrium patens HOM05D006665 ORTHO05D008327 4.7e-78 295.8 382 40.8
CDE06G0006 Ceratophyllum demersum HOM05D006665 ORTHO05D008327 2.6e-76 290.0 362 45.0
Zm00001eb120830 Zea mays HOM05D006665 ORTHO05D008327 1.3e-67 261.2 305 45.6
Atru.chr10.1583 Acer truncatum HOM05D006665 ORTHO05D008327 9.3e-66 255.0 183 63.9
Mapoly0020s0147 Marchantia polymorpha HOM05D006665 ORTHO05D008327 2.1e-65 253.8 369 37.7
SMO118G0425 Selaginella moellendorffii HOM05D006665 ORTHO05D008327 3.0e-64 250.0 374 36.6
vmacro16044 Vaccinium macrocarpon HOM05D006665 ORTHO05D008327 7.4e-63 245.4 224 54.0
AagrBONN_evm.TU.Sc2ySwM_117.2766 Anthoceros agrestis HOM05D006665 ORTHO05D008327 2.1e-62 243.8 315 40.0
Lsat_1_v5_gn_7_25921 Lactuca sativa HOM05D006665 ORTHO05D008327 2.6e-60 236.9 207 57.5
CBR_g34019 Chara braunii HOM05D006665 ORTHO05D008327 5.6e-55 219.2 405 33.8
Psat7g069080 Pisum sativum HOM05D006665 ORTHO05D008327 1.3e-54 218.0 129 78.3
Rhsim02G0145600 Rhododendron simsii HOM05D006665 ORTHO05D008327 1.6e-54 217.6 209 51.7
Cpa.g.sc7.98 Carica papaya HOM05D006665 ORTHO05D008327 9.0e-53 211.8 145 65.5
Haze_06187 Corylus avellana HOM05D006665 ORTHO05D008327 4.5e-52 209.5 180 58.9
Atru.chr10.1584 Acer truncatum HOM05D006665 ORTHO05D008327 1.0e-51 208.4 182 56.6
BcaB06g27285 Brassica carinata HOM05D006665 ORTHO05D008327 2.5e-50 203.8 248 45.6
Dinv12760 Davidia involucrata HOM05D006665 ORTHO05D008327 6.7e-48 195.7 253 53.4
AUR62039464 Chenopodium quinoa HOM05D006665 ORTHO05D008327 8.7e-48 195.3 182 54.9
Hma1.2p1_0113F.1_g055090 Hydrangea macrophylla HOM05D006665 ORTHO05D008327 1.9e-47 194.1 219 47.9
Hma1.2p1_0113F.1_g055096 Hydrangea macrophylla HOM05D006665 ORTHO05D008327 1.9e-47 194.1 219 47.9
Psat7g069040 Pisum sativum HOM05D006665 ORTHO05D008327 4.3e-47 193.0 264 45.8
BcaB04g18653 Brassica carinata HOM05D006665 ORTHO05D008327 7.2e-42 175.6 158 53.8
Psat2g000080 Pisum sativum HOM05D006665 ORTHO05D008327 9.3e-42 175.3 140 63.6
Hund25815 Selenicereus undatus HOM05D006665 ORTHO05D008327 2.7e-41 173.7 182 52.2
SGA_v2.0_scaffold1G00072 Striga asiatica HOM05D006665 ORTHO05D008327 7.7e-36 155.6 125 56.0
VMungo0251G0552 Vigna mungo HOM05D006665 ORTHO05D008327 1.7e-35 154.5 86 82.6
Haze_06186 Corylus avellana HOM05D006665 ORTHO05D008327 3.2e-34 150.2 144 52.8
Oeu043117.1 Olea europaea HOM05D006665 ORTHO05D008327 5.7e-31 139.4 150 55.3
vmacro16043 Vaccinium macrocarpon HOM05D006665 ORTHO05D008327 1.3e-30 138.3 107 60.7
arahy.Tifrunner.gnm1.ann1.H6TAT4 Arachis hypogaea HOM05D006665 ORTHO05D008327 1.5e-28 131.3 98 67.3
RcHm_v2.0_Chr5g0011471 Rosa chinensis HOM05D006665 ORTHO05D008327 2.0e-28 131.0 177 40.1
arahy.Tifrunner.gnm1.ann1.XDX40G Arachis hypogaea HOM05D006665 ORTHO05D008327 4.5e-28 129.8 78 79.5
Cre16.g678400 Chlamydomonas reinhardtii HOM05D006665 ORTHO05D008327 1.4e-21 108.2 177 33.9
SEGI_34445 Sequoiadendron giganteum HOM05D006665 ORTHO05D008327 3.6e-17 93.6 106 39.6
MCO11G387 Micromonas commoda HOM05D006665 ORTHO05D008327 4.7e-17 93.2 361 28.5
FAN25G1258 Fragaria x ananassa HOM05D006665 ORTHO05D008327 3.1e-13 80.5 57 64.9
FAN11G1287 Fragaria x ananassa HOM05D006665 ORTHO05D008327 9.1e-13 79.0 188 34.0
FvH4_3g07410 Fragaria vesca HOM05D006665 ORTHO05D008327 2.5e-10 70.9 163 35.6
arahy.Tifrunner.gnm1.ann1.IN0C4L Arachis hypogaea HOM05D006665 ORTHO05D012122 1.4e-08 65.1 87 49.4
Sabra04G0038600 Salix brachista HOM05D000074 ORTHO05D000220 4.0e-08 63.5 102 34.3
arahy.Tifrunner.gnm1.ann1.PN7KIB Arachis hypogaea HOM05D006665 ORTHO05D018494 2.6e-07 60.8 33 75.8


User provided reference genes

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