Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G093700 Glycine max HOM05D005922 ORTHO05D006934 3.5e-230 801.2 388 100.0
Phvul.002G181600 Phaseolus vulgaris HOM05D005922 ORTHO05D006934 8.1e-203 710.3 394 87.1
Lj4g0028223 Lotus japonicus HOM05D005922 ORTHO05D006934 8.2e-195 683.7 396 82.1
Lalb_Chr13g0293631 Lupinus albus HOM05D005922 ORTHO05D006934 3.7e-179 631.7 393 77.9
Psat7g084400 Pisum sativum HOM05D005922 ORTHO05D006934 3.1e-178 628.6 399 76.4
TPR.G5128 Trifolium pratense HOM05D005922 ORTHO05D006934 2.0e-177 625.9 398 76.1
Ca_11580_v3 Cicer arietinum L. HOM05D005922 ORTHO05D006934 1.4e-175 619.8 396 76.8
arahy.Tifrunner.gnm1.ann1.DV72QU Arachis hypogaea HOM05D005922 ORTHO05D006934 4.8e-171 604.7 386 74.4
CiPaw.06G059000 Carya illinoinensis HOM05D005922 ORTHO05D006934 4.7e-142 508.4 390 64.4
QL03p038994 Quercus lobata HOM05D005922 ORTHO05D006934 6.8e-141 504.6 387 62.5
MD16G1013700 Malus domestica HOM05D005922 ORTHO05D006934 4.9e-139 498.4 389 62.0
TAR622G0311 Trochodendron aralioides HOM05D005922 ORTHO05D006934 7.0e-138 494.6 391 63.2
Ciclev10015473m.g Citrus clementina HOM05D005922 ORTHO05D006934 9.2e-138 494.2 397 61.7
Manes.17G088400 Manihot esculenta HOM05D005922 ORTHO05D006934 5.0e-136 488.4 386 62.4
RcHm_v2.0_Chr4g0442081 Rosa chinensis HOM05D005922 ORTHO05D006934 1.4e-130 470.3 386 60.4
Aqoxy3G04113 Aquilegia oxysepala HOM05D005922 ORTHO05D006934 3.2e-130 469.2 398 59.3
Actinidia20108 Actinidia chinensis HOM05D005922 ORTHO05D006934 5.4e-130 468.4 392 59.2
FAN12G4156 Fragaria x ananassa HOM05D005922 ORTHO05D006934 6.0e-129 464.9 383 60.3
FvH4_4g33040 Fragaria vesca HOM05D005922 ORTHO05D006934 7.8e-129 464.5 383 60.3
Rhsim09G0086000 Rhododendron simsii HOM05D005922 ORTHO05D006934 1.7e-128 463.4 392 58.4
Gorai.012G183700 Gossypium raimondii HOM05D005922 ORTHO05D006934 3.9e-128 462.2 399 58.1
CSS0049283 Camellia sinensis var. sinensis HOM05D005922 ORTHO05D006934 6.6e-128 461.5 395 58.7
FAN17G1819 Fragaria x ananassa HOM05D005922 ORTHO05D006934 2.5e-127 459.5 383 59.5
TWI74G0639 Tripterygium wilfordii HOM05D005922 ORTHO05D006934 9.5e-127 457.6 386 57.3
Glyma.05G138500 Glycine max HOM05D005922 ORTHO05D006934 1.6e-126 456.8 288 80.9
FAN07G1633 Fragaria x ananassa HOM05D005922 ORTHO05D006934 2.3e-125 453.0 383 58.5
FAN22G1644 Fragaria x ananassa HOM05D005922 ORTHO05D006934 2.0e-124 449.9 390 58.5
PSO017G1338 Papaver somniferum HOM05D005922 ORTHO05D006934 2.6e-124 449.5 394 59.1
Lj3A860T49 Lonicera japonica HOM05D005922 ORTHO05D006934 4.4e-124 448.7 387 59.2
PSO478G3575 Papaver somniferum HOM05D005922 ORTHO05D006934 5.8e-124 448.4 394 58.9
Nn4g24501 Nelumbo nucifera HOM05D005922 ORTHO05D006934 9.8e-124 447.6 391 57.5
Eucgr.B02658 Eucalyptus grandis HOM05D005922 ORTHO05D006934 6.4e-123 444.9 396 55.3
EL10Ac6g14554 Beta vulgaris HOM05D005922 ORTHO05D006934 2.4e-122 443.0 386 55.4
Potri.008G139000 Populus trichocarpa HOM05D005922 ORTHO05D006934 9.2e-122 441.0 376 59.8
Prupe.1G337400 Prunus persica HOM05D005922 ORTHO05D006934 3.0e-120 436.0 384 55.5
Solyc01g005100.4 Solanum lycopersicum HOM05D005922 ORTHO05D006934 5.1e-120 435.3 390 55.6
CAN.G282.103 Capsicum annuum HOM05D005922 ORTHO05D006934 1.1e-119 434.1 391 57.5
CsaV3_5G013220 Cucumis sativus L. HOM05D005922 ORTHO05D006934 1.1e-119 434.1 388 56.4
Sopen01g001120 Solanum pennellii HOM05D005922 ORTHO05D006934 1.1e-119 434.1 390 55.6
Sed0026869 Sechium edule HOM05D005922 ORTHO05D006934 1.9e-119 433.3 384 57.3
BcaB03g15398 Brassica carinata HOM05D005922 ORTHO05D006934 3.3e-119 432.6 386 57.0
Duzib248G0719 Durio zibethinus HOM05D005922 ORTHO05D006934 9.5e-119 431.0 391 55.8
MELO3C020028.2 Cucumis melo HOM05D005922 ORTHO05D006934 1.2e-118 430.6 389 56.8
PGR102G1589 Punica granatum HOM05D005922 ORTHO05D006934 1.2e-118 430.6 398 54.5
GSVIVG01011600001 Vitis vinifera HOM05D005922 ORTHO05D006934 1.2e-118 430.6 391 56.5
PGSC0003DMG400022790 Solanum tuberosum HOM05D005922 ORTHO05D006934 8.1e-118 427.9 395 56.2
THA.LOC104809799 Tarenaya hassleriana HOM05D005922 ORTHO05D006934 8.1e-118 427.9 367 58.3
Thhalv10018688m.g Eutrema salsugineum HOM05D005922 ORTHO05D006934 1.1e-117 427.6 391 55.8
MSTRG.418 Avicennia marina HOM05D005922 ORTHO05D006934 1.4e-117 427.2 387 56.6
BraA07t30847Z Brassica rapa HOM05D005922 ORTHO05D006934 1.5e-116 423.7 385 55.8
Gohir.D04G188200 Gossypium hirsutum HOM05D005922 ORTHO05D006934 2.0e-116 423.3 327 63.6
Cc11_g05840 Coffea canephora HOM05D005922 ORTHO05D006934 3.4e-116 422.5 386 55.2
AL2G26830 Arabidopsis lyrata HOM05D005922 ORTHO05D006934 4.4e-116 422.2 394 55.1
BcaC08g45999 Brassica carinata HOM05D005922 ORTHO05D006934 4.4e-116 422.2 381 55.6
BolC6t38893H Brassica oleracea HOM05D005922 ORTHO05D006934 4.4e-116 422.2 381 55.6
arahy.Tifrunner.gnm1.ann1.F0VD4J Arachis hypogaea HOM05D005922 ORTHO05D006934 9.9e-116 421.0 276 71.4
AUR62007770 Chenopodium quinoa HOM05D005922 ORTHO05D006934 9.9e-116 421.0 387 54.0
C06p37940 Brassica napus HOM05D005922 ORTHO05D006934 4.9e-115 418.7 383 55.4
Sc10g0003730 Simmondsia chinensis HOM05D005922 ORTHO05D006934 4.9e-115 418.7 375 57.9
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 1.1e-114 417.5 366 58.2
Carub.0002s1456 Capsella rubella HOM05D005922 ORTHO05D006934 1.4e-114 417.2 391 55.0
ECA234G0994 Erigeron canadensis HOM05D005922 ORTHO05D006934 1.2e-113 414.1 375 55.7
A07p32170 Brassica napus HOM05D005922 ORTHO05D006934 2.1e-113 413.3 383 54.6
Hund05787 Selenicereus undatus HOM05D005922 ORTHO05D006934 2.1e-113 413.3 432 50.2
ClCG11G001170 Citrullus lanatus HOM05D005922 ORTHO05D006934 2.7e-113 412.9 387 55.6
Sabra08G0105600 Salix brachista HOM05D005922 ORTHO05D006934 2.7e-113 412.9 410 53.7
AUR62002964 Chenopodium quinoa HOM05D005922 ORTHO05D006934 6.0e-113 411.8 386 52.6
HanXRQChr17g0566161 Helianthus annuus HOM05D005922 ORTHO05D006934 7.8e-113 411.4 391 53.5
Gohir.A04G143900 Gossypium hirsutum HOM05D005922 ORTHO05D006934 5.1e-112 408.7 349 59.3
Lsat_1_v5_gn_4_23861 Lactuca sativa HOM05D005922 ORTHO05D006934 4.3e-111 405.6 367 56.7
CSS0037760 Camellia sinensis var. sinensis HOM05D005922 ORTHO05D006934 7.3e-111 404.8 394 53.8
Migut.L00620 Erythranthe guttata HOM05D005922 ORTHO05D006934 1.6e-110 403.7 388 52.6
MBI19_g25220_MAGBIO Magnolia biondii HOM05D005922 ORTHO05D006934 8.1e-110 401.4 386 53.4
ATR0598G299 Amborella trichopoda HOM05D005922 ORTHO05D006934 1.2e-108 397.5 388 51.0
Dinv14365 Davidia involucrata HOM05D001297 ORTHO05D001135 7.6e-108 394.8 388 54.9
Sp5g23080 Schrenkiella parvula HOM05D005922 ORTHO05D006934 9.9e-108 394.4 333 59.8
VMungo0251G2725 Vigna mungo HOM05D005922 ORTHO05D006934 5.4e-106 388.7 228 82.5
Nitab4.5_0001935g0050 Nicotiana tabacum HOM05D005922 ORTHO05D006934 3.0e-104 382.9 412 51.0
CANSAT78G1412 Cannabis sativa HOM05D005922 ORTHO05D006934 3.9e-104 382.5 391 52.4
unitig_748.g7591 Utricularia gibba HOM05D005922 ORTHO05D006934 1.3e-102 377.5 390 51.0
Nitab4.5_0000521g0110 Nicotiana tabacum HOM05D005922 ORTHO05D006934 6.2e-102 375.2 448 47.5
SGA_v2.0_scaffold57G20105 Striga asiatica HOM05D005922 ORTHO05D006934 4.0e-101 372.5 394 51.3
SHI04278 Sapria himalayana HOM05D005922 ORTHO05D006934 2.6e-100 369.8 394 49.5
Haze_10819 Corylus avellana HOM05D005922 ORTHO05D006934 6.6e-96 355.1 228 72.4
DCAR_026820 Daucus carota HOM05D005922 ORTHO05D006934 2.8e-94 349.7 377 51.2
BcaC08g45997 Brassica carinata HOM05D005922 ORTHO05D006934 1.5e-92 344.0 317 54.9
Cpa.g.sc2.132 Carica papaya HOM05D005922 ORTHO05D006934 3.4e-92 342.8 329 52.6
COL.COLO4_27589 Corchorus olitorius HOM05D005922 ORTHO05D006934 1.3e-91 340.9 324 54.6
arahy.Tifrunner.gnm1.ann1.GW2J4P Arachis hypogaea HOM05D006503 ORTHO05D008116 1.7e-91 340.5 238 68.5
Os03g0238700 Oryza sativa ssp. japonica HOM05D005922 ORTHO05D006934 3.7e-86 322.8 304 53.6
CDE05G0039 Ceratophyllum demersum HOM05D005922 ORTHO05D006934 7.6e-84 315.1 389 44.5
Ah.03g138110 Amaranthus hybridus HOM05D005922 ORTHO05D006934 6.4e-83 312.0 387 44.2
AT1G68080 Arabidopsis thaliana HOM05D005922 ORTHO05D006934 1.9e-82 310.5 337 48.7
Pp3c27_7680 Physcomitrium patens HOM05D005922 ORTHO05D006934 9.6e-79 298.1 458 38.6
Cfa015069 Carpinus fangiana HOM05D005922 ORTHO05D006934 3.1e-77 293.1 390 42.6
SalBow7G4797 Salvia bowleyana HOM05D005922 ORTHO05D006934 2.0e-76 290.4 420 42.4
Atru.chr11.736 Acer truncatum HOM05D005922 ORTHO05D006934 1.9e-74 283.9 380 42.9
AagrBONN_evm.TU.Sc2ySwM_117.2043 Anthoceros agrestis HOM05D005922 ORTHO05D006934 5.5e-66 255.8 318 47.5
CARHR060740 Cardamine hirsuta HOM05D005922 ORTHO05D006934 9.7e-63 245.0 281 48.0
Mapoly0075s0019 Marchantia polymorpha HOM05D005922 ORTHO05D006934 5.9e-60 235.7 387 38.2
Thecc.02G304700 Theobroma cacao HOM05D005922 ORTHO05D006934 2.9e-59 233.4 270 47.4
arahy.Tifrunner.gnm1.ann1.05ZMZX Arachis hypogaea HOM05D005922 ORTHO05D006934 8.5e-59 231.9 148 73.6
HPP92_016714 Vanilla planifolia HOM05D005922 ORTHO05D006934 2.5e-58 230.3 285 44.2
Peaxi162Scf01111g00310 Petunia axillaris HOM05D005922 ORTHO05D006934 5.1e-56 222.6 294 40.1
Nitab4.5_0001294g0040 Nicotiana tabacum HOM05D005922 ORTHO05D006934 3.7e-54 216.5 156 64.1
VMungo0251G3333 Vigna mungo HOM05D005922 ORTHO05D006934 1.3e-51 208.0 102 90.2
Migut.O00731 Erythranthe guttata HOM05D005922 ORTHO05D006934 2.7e-49 200.3 251 43.4
SEGI_26303 Sequoiadendron giganteum HOM05D005922 ORTHO05D006934 4.4e-47 193.0 127 69.3
CBR_g16882 Chara braunii HOM05D005922 ORTHO05D006934 3.7e-46 189.9 133 60.9
BcaB05g23450 Brassica carinata HOM05D005922 ORTHO05D006934 1.2e-44 184.9 112 73.2
Nitab4.5_0001294g0050 Nicotiana tabacum HOM05D005922 ORTHO05D006934 2.7e-41 173.7 150 58.0
Oeu034664.1 Olea europaea HOM05D005922 ORTHO05D006934 3.0e-40 170.2 114 73.7
arahy.Tifrunner.gnm1.ann1.P482X0 Arachis hypogaea HOM05D005922 ORTHO05D006934 1.1e-37 161.8 93 79.6
Cre12.g486551 Chlamydomonas reinhardtii HOM05D005922 ORTHO05D006934 2.9e-35 153.7 165 46.7
Oeu031680.1 Olea europaea HOM05D005922 ORTHO05D006934 8.3e-30 135.6 138 54.3
Manes.18G025338 Manihot esculenta HOM05D005922 ORTHO05D006934 2.7e-28 130.6 83 77.1
BcaB02g11286 Brassica carinata HOM05D005922 ORTHO05D006934 7.7e-28 129.0 119 55.5
arahy.Tifrunner.gnm1.ann1.62WV2A Arachis hypogaea HOM05D005922 ORTHO05D006934 5.7e-23 112.8 102 53.9
arahy.Tifrunner.gnm1.ann1.QG6U7W Arachis hypogaea HOM05D005922 ORTHO05D006934 5.7e-23 112.8 102 53.9
arahy.Tifrunner.gnm1.ann1.B3UXS8 Arachis hypogaea HOM05D005922 ORTHO05D006934 2.9e-19 100.5 55 85.5
arahy.Tifrunner.gnm1.ann1.39MP9Z Arachis hypogaea HOM05D002181 ORTHO05D003287 3.3e-18 97.1 60 71.7
arahy.Tifrunner.gnm1.ann1.10JCRR Arachis hypogaea HOM05D000690 ORTHO05D006934 1.2e-17 95.1 94 52.1
arahy.Tifrunner.gnm1.ann1.XTWJ7M Arachis hypogaea HOM05D002181 ORTHO05D006934 2.1e-17 94.4 57 73.7
Zm00001eb399130 Zea mays HOM05D005922 ORTHO05D006934 6.8e-16 89.4 81 50.6
arahy.Tifrunner.gnm1.ann1.043Q1E Arachis hypogaea HOM05D005922 ORTHO05D006934 1.5e-15 88.2 49 77.6
CDE11G0599 Ceratophyllum demersum HOM05D005922 ORTHO05D006934 2.6e-15 87.4 85 48.2
PRCOL_00005504 Prasinoderma coloniale HOM05D005922 ORTHO05D006934 5.8e-15 86.3 188 31.9
arahy.Tifrunner.gnm1.ann1.QNE0FJ Arachis hypogaea HOM05D002181 ORTHO05D003287 7.5e-15 85.9 49 73.5
SEGI_24854 Sequoiadendron giganteum HOM05D005922 ORTHO05D006934 1.5e-10 71.6 236 26.3
Haze_10820 Corylus avellana HOM05D005922 ORTHO05D006934 4.7e-09 66.6 84 44.0
MCO06G046 Micromonas commoda HOM05D005922 ORTHO05D006934 4.0e-08 63.5 84 36.9
A02p14700 Brassica napus HOM05D005922 ORTHO05D006934 1.2e-07 62.0 173 27.2
BraA02t06537Z Brassica rapa HOM05D005922 ORTHO05D006934 1.2e-07 62.0 173 27.2
Medtr1g102140 Medicago truncatula HOM05D005922 ORTHO05D006934 6.4e-06 56.2 29 93.1
Zm00001eb371330 Zea mays HOM05D005922 ORTHO05D006934 6.4e-06 56.2 41 51.2


User provided reference genes

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