Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G092600 Glycine max HOM05D008187 ORTHO05D009830 5.6e-92 340.9 168 100.0
Glyma.05G137300 Glycine max HOM05D008187 ORTHO05D009830 1.0e-77 293.5 168 92.3
Phvul.002G184100 Phaseolus vulgaris HOM05D008187 ORTHO05D009830 9.3e-71 270.4 166 87.3
VMungo0251G0444 Vigna mungo HOM05D008187 ORTHO05D009830 1.0e-69 266.9 156 89.1
Lj4g0022895 Lotus japonicus HOM05D008187 ORTHO05D009830 1.1e-63 246.9 166 77.1
Ca_18193_v3 Cicer arietinum L. HOM05D008187 ORTHO05D009830 6.3e-59 231.1 167 74.9
Lalb_Chr07g0187941 Lupinus albus HOM05D008187 ORTHO05D009830 9.0e-58 227.3 172 73.8
Psat7g085360 Pisum sativum HOM05D008187 ORTHO05D009830 7.2e-55 217.6 167 73.1
arahy.Tifrunner.gnm1.ann1.FUMC5T Arachis hypogaea HOM05D008187 ORTHO05D009830 2.0e-44 183.0 157 63.7
QL03p039185 Quercus lobata HOM05D008187 ORTHO05D009830 1.2e-41 173.7 175 57.7
arahy.Tifrunner.gnm1.ann1.61TZTK Arachis hypogaea HOM05D008187 ORTHO05D009830 6.5e-40 167.9 121 74.4
GSVIVG01011592001 Vitis vinifera HOM05D008187 ORTHO05D009830 3.2e-39 165.6 168 56.5
Dinv08898 Davidia involucrata HOM05D008187 ORTHO05D009830 3.6e-38 162.2 156 59.0
Thecc.02G303500 Theobroma cacao HOM05D008187 ORTHO05D009830 2.0e-36 156.4 165 55.8
CiPaw.06G058400 Carya illinoinensis HOM05D008187 ORTHO05D009830 7.5e-36 154.5 152 57.9
MD13G1015500 Malus domestica HOM05D008187 ORTHO05D009830 2.2e-35 152.9 180 53.3
Manes.17G089700 Manihot esculenta HOM05D008187 ORTHO05D009830 2.8e-35 152.5 165 51.5
TAR622G0296 Trochodendron aralioides HOM05D008187 ORTHO05D009830 9.1e-34 147.5 166 51.8
Dinv20504 Davidia involucrata HOM05D008187 ORTHO05D009830 2.0e-33 146.4 128 60.2
Dinv20537 Davidia involucrata HOM05D008187 ORTHO05D009830 2.0e-33 146.4 128 60.2
Manes.15G138900 Manihot esculenta HOM05D008187 ORTHO05D009830 4.5e-33 145.2 133 56.4
CSS0005647 Camellia sinensis var. sinensis HOM05D008187 ORTHO05D009830 1.7e-32 143.3 159 53.5
TPR.G11831 Trifolium pratense HOM05D008187 ORTHO05D009830 2.9e-32 142.5 120 65.0
COL.COLO4_27577 Corchorus olitorius HOM05D008187 ORTHO05D009830 1.5e-31 140.2 165 53.3
Potri.010G101500 Populus trichocarpa HOM05D008187 ORTHO05D009830 4.2e-31 138.7 167 48.5
Potri.008G140000 Populus trichocarpa HOM05D008187 ORTHO05D009830 1.2e-30 137.1 167 47.3
CiPaw.05G158900 Carya illinoinensis HOM05D008187 ORTHO05D009830 4.7e-30 135.2 165 53.3
FAN07G0781 Fragaria x ananassa HOM05D008187 ORTHO05D009830 4.7e-30 135.2 175 48.0
FAN12G2367 Fragaria x ananassa HOM05D008187 ORTHO05D009830 4.7e-30 135.2 175 48.0
FAN12G2898 Fragaria x ananassa HOM05D008187 ORTHO05D009830 4.7e-30 135.2 175 48.0
FAN22G0157 Fragaria x ananassa HOM05D008187 ORTHO05D009830 8.0e-30 134.4 175 48.0
FAN17G0865 Fragaria x ananassa HOM05D008187 ORTHO05D009830 1.0e-29 134.0 175 48.0
Atru.chr11.1001 Acer truncatum HOM05D008187 ORTHO05D009830 1.8e-29 133.3 175 48.6
Hma1.2p1_0441F.1_g153840 Hydrangea macrophylla HOM05D008187 ORTHO05D009830 1.8e-29 133.3 147 49.7
MD16G1013000 Malus domestica HOM05D008187 ORTHO05D009830 2.3e-29 132.9 181 46.4
FvH4_4g26140 Fragaria vesca HOM05D008187 ORTHO05D009830 4.0e-29 132.1 175 47.4
Sabra08G0106100 Salix brachista HOM05D008187 ORTHO05D009830 5.7e-28 128.3 165 46.7
Prupe.1G338300 Prunus persica HOM05D008187 ORTHO05D009830 3.7e-27 125.6 180 47.8
Sabra10G0074300 Salix brachista HOM05D008187 ORTHO05D009830 4.8e-27 125.2 168 47.0
TWI74G1547 Tripterygium wilfordii HOM05D008187 ORTHO05D009830 1.0e-24 117.5 136 54.4
Ciclev10016789m.g Citrus clementina HOM05D008187 ORTHO05D009830 1.7e-24 116.7 175 48.0
Eucgr.B02651 Eucalyptus grandis HOM05D008187 ORTHO05D009830 6.5e-24 114.8 165 43.6
TWI77G0539 Tripterygium wilfordii HOM05D008187 ORTHO05D009830 5.5e-23 111.7 152 47.4
TPR.G34432 Trifolium pratense HOM05D008187 ORTHO05D009830 7.2e-23 111.3 79 74.7
Rhsim09G0085300 Rhododendron simsii HOM05D008187 ORTHO05D009830 4.4e-20 102.1 169 41.4
CANSAT78G2356 Cannabis sativa HOM05D008187 ORTHO05D009830 2.2e-19 99.8 199 37.2
Gohir.D04G188100 Gossypium hirsutum HOM05D008187 ORTHO05D009830 2.2e-19 99.8 159 43.4
Actinidia38421 Actinidia chinensis HOM05D008187 ORTHO05D009830 2.8e-19 99.4 131 42.0
Sed0002824 Sechium edule HOM05D008187 ORTHO05D009830 6.3e-19 98.2 146 43.8
Haze_10807 Corylus avellana HOM05D008187 ORTHO05D009830 8.3e-19 97.8 68 70.6
Gohir.A04G143800 Gossypium hirsutum HOM05D008187 ORTHO05D009830 8.3e-19 97.8 158 44.3
Actinidia34059 Actinidia chinensis HOM05D008187 ORTHO05D009830 4.1e-18 95.5 120 44.2
Gorai.012G183500 Gossypium raimondii HOM05D008187 ORTHO05D009830 7.0e-18 94.7 161 42.9
FAN17G0113 Fragaria x ananassa HOM05D008187 ORTHO05D009830 1.7e-16 90.1 140 42.9
MBI19_g01917_MAGBIO Magnolia biondii HOM05D003603 ORTHO05D009830 4.3e-15 85.5 118 45.8
DCAR_023540 Daucus carota HOM05D008187 ORTHO05D009830 1.6e-14 83.6 165 35.8
ECA234G1527 Erigeron canadensis HOM05D005481 ORTHO05D006779 4.7e-14 82.0 172 38.4
CsaV3_5G012950 Cucumis sativus L. HOM05D008187 ORTHO05D009830 6.1e-14 81.6 120 46.7
MELO3C020063.2 Cucumis melo HOM05D008187 ORTHO05D009830 1.0e-13 80.9 120 48.3
ClCG11G000980 Citrullus lanatus HOM05D008187 ORTHO05D009830 3.0e-13 79.3 120 45.8
Lj6A731T87 Lonicera japonica HOM05D008187 ORTHO05D009830 6.8e-13 78.2 119 42.9
Haze_10806 Corylus avellana HOM05D008187 ORTHO05D009830 2.0e-12 76.6 122 43.4
HanXRQChr17g0566281 Helianthus annuus HOM05D008187 ORTHO05D009830 2.0e-12 76.6 153 34.6
HanXRQChr16g0527611 Helianthus annuus HOM05D008187 ORTHO05D009830 4.4e-12 75.5 174 36.2
Lsat_1_v5_gn_4_24181 Lactuca sativa HOM05D008187 ORTHO05D009830 4.4e-12 75.5 145 37.2
Nn3g18471 Nelumbo nucifera HOM05D008187 ORTHO05D009830 4.4e-12 75.5 214 32.7
THA.LOC104805100 Tarenaya hassleriana HOM05D010619 ORTHO05D009830 3.7e-11 72.4 125 45.6
DCAR_026822 Daucus carota HOM05D008187 ORTHO05D009830 8.3e-11 71.2 180 32.2
TAR374G1419 Trochodendron aralioides HOM05D003603 ORTHO05D009830 2.4e-10 69.7 102 39.2
BolC9t55912H Brassica oleracea HOM05D010619 ORTHO05D009830 3.5e-09 65.9 148 33.1
CDE03G0025 Ceratophyllum demersum HOM05D003603 ORTHO05D004186 5.9e-09 65.1 107 33.6
BcaC04g21548 Brassica carinata HOM05D010619 ORTHO05D009830 7.8e-09 64.7 145 32.4
C09p30500 Brassica napus HOM05D010619 ORTHO05D009830 1.0e-08 64.3 144 33.3
BcaB07g30724 Brassica carinata HOM05D010619 ORTHO05D009830 3.9e-08 62.4 123 34.1
ATR0829G136 Amborella trichopoda HOM05D003603 ORTHO05D004186 5.0e-08 62.0 76 38.2
AT2G01913 Arabidopsis thaliana HOM05D010619 ORTHO05D009830 5.0e-08 62.0 121 37.2
SEGI_33169 Sequoiadendron giganteum HOM05D003603 ORTHO05D004186 5.0e-08 62.0 110 30.9
ATR0598G345 Amborella trichopoda HOM05D003603 ORTHO05D004186 6.6e-08 61.6 118 33.9
AL5G11040 Arabidopsis lyrata HOM05D010619 ORTHO05D009830 8.6e-08 61.2 119 36.1
SEGI_08166 Sequoiadendron giganteum HOM05D003603 ORTHO05D004186 8.6e-08 61.2 110 31.8
BcaB02g09414 Brassica carinata HOM05D003603 ORTHO05D004186 1.1e-07 60.8 75 41.3
Sp2g13350 Schrenkiella parvula HOM05D010619 ORTHO05D009830 1.1e-07 60.8 137 36.5
A09p34230 Brassica napus HOM05D003603 ORTHO05D004186 1.9e-07 60.1 104 34.6
BraA09t38971Z Brassica rapa HOM05D003603 ORTHO05D004186 1.9e-07 60.1 104 34.6
CDE06G0200 Ceratophyllum demersum HOM05D003603 ORTHO05D004186 2.5e-07 59.7 71 42.3
Thhalv10005091m.g Eutrema salsugineum HOM05D010619 ORTHO05D009830 4.3e-07 58.9 125 36.0
PSO063G1743 Papaver somniferum HOM05D003603 ORTHO05D004186 5.6e-07 58.5 51 51.0
PSO782G4801 Papaver somniferum HOM05D003603 ORTHO05D004186 5.6e-07 58.5 51 51.0
AL4G31620 Arabidopsis lyrata HOM05D003603 ORTHO05D004186 7.3e-07 58.2 57 42.1
A09p23610 Brassica napus HOM05D010619 ORTHO05D009830 7.3e-07 58.2 145 33.8
BraA09t37965Z Brassica rapa HOM05D010619 ORTHO05D009830 7.3e-07 58.2 145 33.8
Carub.0004s1726 Capsella rubella HOM05D003603 ORTHO05D004186 7.3e-07 58.2 56 46.4
Aa31LG2G14110 Aethionema arabicum HOM05D003603 ORTHO05D004186 9.5e-07 57.8 123 31.7
BcaC05g27220 Brassica carinata HOM05D003603 ORTHO05D004186 9.5e-07 57.8 104 33.7
BolC5t31853H Brassica oleracea HOM05D003603 ORTHO05D004186 9.5e-07 57.8 104 33.7
CARHR129770 Cardamine hirsuta HOM05D003603 ORTHO05D004186 9.5e-07 57.8 47 48.9
Carub.0001s3027 Capsella rubella HOM05D003603 ORTHO05D004186 1.6e-06 57.0 123 31.7
Migut.E01327 Erythranthe guttata HOM05D003603 ORTHO05D004186 1.6e-06 57.0 116 30.2
Thhalv10017363m.g Eutrema salsugineum HOM05D003603 ORTHO05D004186 1.6e-06 57.0 57 43.9
Sp1g27670 Schrenkiella parvula HOM05D003603 ORTHO05D004186 1.6e-06 57.0 123 30.9
Actinidia01335 Actinidia chinensis HOM05D003603 ORTHO05D004186 2.1e-06 56.6 102 33.3
Duzib068G0284 Durio zibethinus HOM05D003603 ORTHO05D004186 2.1e-06 56.6 76 35.5
Lsat_1_v5_gn_6_73320 Lactuca sativa HOM05D003603 ORTHO05D004186 2.1e-06 56.6 96 34.4
Lalb_Chr16g0380941 Lupinus albus HOM05D003603 ORTHO05D004186 2.8e-06 56.2 104 33.7
Sp4g17800 Schrenkiella parvula HOM05D003603 ORTHO05D004186 2.8e-06 56.2 47 48.9
CARHR031290 Cardamine hirsuta HOM05D003603 ORTHO05D004186 3.6e-06 55.8 102 35.3
Medtr5g027940 Medicago truncatula HOM05D003603 ORTHO05D004186 3.6e-06 55.8 128 28.9
THA.LOC104798506 Tarenaya hassleriana HOM05D003603 ORTHO05D004186 3.6e-06 55.8 83 36.1
Aa31LG2G7990 Aethionema arabicum HOM05D010619 ORTHO05D009830 4.7e-06 55.5 122 34.4
Eucgr.D02636 Eucalyptus grandis HOM05D003603 ORTHO05D004186 4.7e-06 55.5 79 36.7
Lalb_Chr05g0215661 Lupinus albus HOM05D003603 ORTHO05D004186 4.7e-06 55.5 47 46.8
PGR031G2143 Punica granatum HOM05D003603 ORTHO05D004186 4.7e-06 55.5 73 38.4
Atru.chr6.1552 Acer truncatum HOM05D003603 ORTHO05D004186 6.2e-06 55.1 47 46.8
Aa31LG9G15610 Aethionema arabicum HOM05D003603 ORTHO05D004186 6.2e-06 55.1 54 40.7
AUR62007409 Chenopodium quinoa HOM05D003603 ORTHO05D004186 6.2e-06 55.1 89 34.8
FAN08G0102 Fragaria x ananassa HOM05D003603 ORTHO05D004186 6.2e-06 55.1 73 39.7
FAN13G0864 Fragaria x ananassa HOM05D003603 ORTHO05D004186 6.2e-06 55.1 73 39.7
MBI04_g20981_MAGBIO Magnolia biondii HOM05D003603 ORTHO05D004186 6.2e-06 55.1 76 36.8
A04p26990 Brassica napus HOM05D003603 ORTHO05D004186 8.0e-06 54.7 95 33.7
BraA04t18200Z Brassica rapa HOM05D003603 ORTHO05D004186 8.0e-06 54.7 95 33.7
Carub.0005s0092 Capsella rubella HOM05D010619 ORTHO05D009830 8.0e-06 54.7 120 35.8
Thhalv10008962m.g Eutrema salsugineum HOM05D003603 ORTHO05D004186 8.0e-06 54.7 102 34.3
FvH4_5g23370 Fragaria vesca HOM05D003603 ORTHO05D004186 8.0e-06 54.7 76 36.8
FAN18G1056 Fragaria x ananassa HOM05D003603 ORTHO05D004186 8.0e-06 54.7 76 36.8
FAN18G2371 Fragaria x ananassa HOM05D003603 ORTHO05D004186 8.0e-06 54.7 76 36.8
Gohir.A03G000024 Gossypium hirsutum HOM05D003603 ORTHO05D004186 8.0e-06 54.7 49 44.9
Gohir.D03G177000 Gossypium hirsutum HOM05D003603 ORTHO05D004186 8.0e-06 54.7 49 44.9
RcHm_v2.0_Chr7g0212381 Rosa chinensis HOM05D003603 ORTHO05D004186 8.0e-06 54.7 47 48.9
Sc07g0008400 Simmondsia chinensis HOM05D003603 ORTHO05D004186 8.0e-06 54.7 78 37.2
Thecc.03G009300 Theobroma cacao HOM05D000009 ORTHO05D009830 8.0e-06 54.7 67 46.3


User provided reference genes

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