Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G088000 Glycine max HOM05D005985 ORTHO05D007403 6.5e-145 517.3 251 100.0
Phvul.002G189300 Phaseolus vulgaris HOM05D005985 ORTHO05D007403 3.1e-118 428.7 219 91.3
Ca_18238_v3 Cicer arietinum L. HOM05D005985 ORTHO05D007403 3.5e-114 415.2 219 88.1
Lj4g0025954 Lotus japonicus HOM05D005985 ORTHO05D007403 9.5e-112 407.1 218 87.2
Medtr4g094720 Medicago truncatula HOM05D005985 ORTHO05D007403 3.6e-111 405.2 219 85.4
TPR.G31247 Trifolium pratense HOM05D005985 ORTHO05D007403 3.6e-111 405.2 219 86.3
arahy.Tifrunner.gnm1.ann1.BM2Q5K Arachis hypogaea HOM05D005985 ORTHO05D007403 4.7e-111 404.8 253 77.1
VMungo0251G0059 Vigna mungo HOM05D005985 ORTHO05D007403 4.7e-111 404.8 219 87.2
Lalb_Chr07g0188301 Lupinus albus HOM05D005985 ORTHO05D007403 1.8e-110 402.9 219 86.3
Psat7g085840 Pisum sativum HOM05D005985 ORTHO05D007403 6.8e-110 401.0 219 85.4
arahy.Tifrunner.gnm1.ann1.7BH383 Arachis hypogaea HOM05D005985 ORTHO05D007403 1.7e-108 396.4 220 83.6
MBI18_g28902_MAGBIO Magnolia biondii HOM05D005985 ORTHO05D007403 6.2e-103 377.9 220 80.5
Dinv29531 Davidia involucrata HOM05D005985 ORTHO05D007403 8.1e-103 377.5 217 82.0
Haze_00800 Corylus avellana HOM05D005985 ORTHO05D007403 1.1e-102 377.1 263 71.1
GSVIVG01017666001 Vitis vinifera HOM05D005985 ORTHO05D007403 5.2e-102 374.8 220 80.0
Nn3g21870 Nelumbo nucifera HOM05D005985 ORTHO05D007403 1.2e-101 373.6 220 78.2
QL06p013713 Quercus lobata HOM05D005985 ORTHO05D007403 2.6e-101 372.5 219 78.5
Cfa015714 Carpinus fangiana HOM05D005985 ORTHO05D007403 5.8e-101 371.3 221 79.2
Aqoxy2G02563 Aquilegia oxysepala HOM05D005985 ORTHO05D007403 7.6e-101 370.9 249 72.7
Solyc03g096040.3 Solanum lycopersicum HOM05D005985 ORTHO05D007403 8.4e-100 367.5 220 79.5
Manes.15G003600 Manihot esculenta HOM05D005985 ORTHO05D007403 1.1e-99 367.1 219 78.5
Sopen03g026120 Solanum pennellii HOM05D005985 ORTHO05D007403 1.1e-99 367.1 220 79.1
Atru.chr4.3125 Acer truncatum HOM05D005985 ORTHO05D007403 1.9e-99 366.3 219 77.2
PSO144G0010 Papaver somniferum HOM05D005985 ORTHO05D007403 3.2e-99 365.5 219 78.1
PGSC0003DMG400027720 Solanum tuberosum HOM05D005985 ORTHO05D007403 7.1e-99 364.4 220 79.1
PSO210G5602 Papaver somniferum HOM05D005985 ORTHO05D007403 2.7e-98 362.5 220 77.7
Eucgr.G02036 Eucalyptus grandis HOM05D005985 ORTHO05D007403 3.5e-98 362.1 219 75.8
Gorai.011G204600 Gossypium raimondii HOM05D005985 ORTHO05D007403 4.6e-98 361.7 220 76.8
TWI09G1588 Tripterygium wilfordii HOM05D005985 ORTHO05D007403 7.8e-98 360.9 220 76.4
CANSAT78G1051 Cannabis sativa HOM05D005985 ORTHO05D007403 1.0e-97 360.5 220 75.9
PSO761G0261 Papaver somniferum HOM05D005985 ORTHO05D007403 1.0e-97 360.5 220 77.3
Peaxi162Scf00103g01922 Petunia axillaris HOM05D005985 ORTHO05D007403 1.0e-97 360.5 220 76.8
Sc24g0001290 Simmondsia chinensis HOM05D005985 ORTHO05D007403 1.0e-97 360.5 221 75.6
EL10Ac3g06274 Beta vulgaris HOM05D005985 ORTHO05D007403 6.6e-97 357.8 220 76.4
Duzib128G0500 Durio zibethinus HOM05D005985 ORTHO05D007403 8.7e-97 357.5 220 75.5
Duzib128G2054 Durio zibethinus HOM05D005985 ORTHO05D007403 1.1e-96 357.1 220 75.5
Gohir.D10G182600 Gossypium hirsutum HOM05D005985 ORTHO05D007403 1.5e-96 356.7 220 75.9
AUR62029991 Chenopodium quinoa HOM05D005985 ORTHO05D007403 1.9e-96 356.3 220 75.9
MD13G1144500 Malus domestica HOM05D005985 ORTHO05D007403 2.5e-96 355.9 220 75.0
SGA_v2.0_scaffold64G22045 Striga asiatica HOM05D005985 ORTHO05D007403 2.5e-96 355.9 219 75.3
RcHm_v2.0_Chr4g0426681 Rosa chinensis HOM05D005985 ORTHO05D007403 3.3e-96 355.5 221 75.1
CDE02G0842 Ceratophyllum demersum HOM05D005985 ORTHO05D007403 5.6e-96 354.8 220 74.1
AUR62002570 Chenopodium quinoa HOM05D005985 ORTHO05D007403 7.3e-96 354.4 220 75.9
Duzib212G0534 Durio zibethinus HOM05D005985 ORTHO05D007403 9.6e-96 354.0 220 74.5
Gohir.A10G176000 Gossypium hirsutum HOM05D005985 ORTHO05D007403 1.3e-95 353.6 220 74.1
PGR031G1426 Punica granatum HOM05D005985 ORTHO05D007403 1.3e-95 353.6 219 74.0
Nitab4.5_0000204g0010 Nicotiana tabacum HOM05D005985 ORTHO05D007403 3.6e-95 352.1 216 75.0
Prupe.1G109000 Prunus persica HOM05D005985 ORTHO05D007403 8.1e-95 350.9 221 74.7
Lj6A699T60 Lonicera japonica HOM05D005985 ORTHO05D007403 1.8e-94 349.7 220 75.0
HanXRQChr07g0194341 Helianthus annuus HOM05D005985 ORTHO05D007403 2.4e-94 349.4 220 74.1
Actinidia02521 Actinidia chinensis HOM05D005985 ORTHO05D007403 4.0e-94 348.6 221 73.3
Potri.008G099900 Populus trichocarpa HOM05D005985 ORTHO05D007403 6.9e-94 347.8 219 74.4
ECA233G5395 Erigeron canadensis HOM05D005985 ORTHO05D007403 1.5e-93 346.7 220 74.5
Nitab4.5_0000781g0010 Nicotiana tabacum HOM05D005985 ORTHO05D007403 1.5e-93 346.7 219 74.4
ClCG05G006800 Citrullus lanatus HOM05D005985 ORTHO05D007403 2.0e-93 346.3 220 73.6
CSS0012631 Camellia sinensis var. sinensis HOM05D005985 ORTHO05D007403 3.4e-93 345.5 229 71.6
DCAR_023383 Daucus carota HOM05D005985 ORTHO05D007403 7.6e-93 344.4 222 73.0
Lsat_1_v5_gn_6_69481 Lactuca sativa HOM05D005985 ORTHO05D007403 7.6e-93 344.4 224 71.9
CsaV3_3G015450 Cucumis sativus L. HOM05D005985 ORTHO05D007403 1.3e-92 343.6 220 71.8
FAN17G1815 Fragaria x ananassa HOM05D005985 ORTHO05D007403 1.3e-92 343.6 220 72.3
ATR0796G055 Amborella trichopoda HOM05D005985 ORTHO05D007403 1.7e-92 343.2 220 72.7
Oeu020283.1 Olea europaea HOM05D005985 ORTHO05D007403 2.2e-92 342.8 219 74.0
Aa31LG10G5610 Aethionema arabicum HOM05D005985 ORTHO05D007403 2.9e-92 342.4 216 72.2
Sabra08G0075600 Salix brachista HOM05D005985 ORTHO05D007403 3.8e-92 342.0 219 74.0
HPP92_020535 Vanilla planifolia HOM05D005985 ORTHO05D007403 3.8e-92 342.0 219 72.6
Ciclev10007138m.g Citrus clementina HOM05D005985 ORTHO05D007403 1.1e-91 340.5 211 76.8
SalBow8G2871 Salvia bowleyana HOM05D005985 ORTHO05D007403 1.1e-91 340.5 219 72.6
MELO3C006744.2 Cucumis melo HOM05D005985 ORTHO05D007403 1.4e-91 340.1 234 69.7
THA.LOC104821806 Tarenaya hassleriana HOM05D005985 ORTHO05D007403 1.4e-91 340.1 216 71.3
Manes.03G210400 Manihot esculenta HOM05D005985 ORTHO05D007403 1.9e-91 339.7 219 70.8
FvH4_4g21120 Fragaria vesca HOM05D005985 ORTHO05D007403 1.2e-90 337.0 211 73.9
unitig_88.g27789 Utricularia gibba HOM05D000412 ORTHO05D007403 1.2e-90 337.0 251 64.5
Os07g0638300 Oryza sativa ssp. japonica HOM05D005985 ORTHO05D007403 4.6e-90 335.1 219 70.8
TAR362G0466 Trochodendron aralioides HOM05D005985 ORTHO05D007403 4.6e-90 335.1 246 65.9
Sp1g35100 Schrenkiella parvula HOM05D005985 ORTHO05D007403 5.1e-89 331.6 220 70.9
AL1G54700 Arabidopsis lyrata HOM05D005985 ORTHO05D007403 8.7e-89 330.9 220 71.4
CARHR037770 Cardamine hirsuta HOM05D005985 ORTHO05D007403 1.1e-88 330.5 220 70.5
Cpa.g.sc146.45 Carica papaya HOM05D005985 ORTHO05D007403 1.5e-88 330.1 219 68.0
Duzib212G0439 Durio zibethinus HOM05D005985 ORTHO05D007403 1.9e-88 329.7 220 71.4
Carub.0001s3723 Capsella rubella HOM05D005985 ORTHO05D007403 3.3e-88 328.9 220 70.9
Rhsim02G0000600 Rhododendron simsii HOM05D005985 ORTHO05D007403 3.3e-88 328.9 220 69.1
AT1G48130 Arabidopsis thaliana HOM05D005985 ORTHO05D007403 5.6e-88 328.2 220 70.9
BolC6t37315H Brassica oleracea HOM05D005985 ORTHO05D007403 5.6e-88 328.2 220 69.1
Thhalv10012121m.g Eutrema salsugineum HOM05D005985 ORTHO05D007403 5.6e-88 328.2 220 70.0
A05p21210 Brassica napus HOM05D005985 ORTHO05D007403 9.6e-88 327.4 220 69.5
BcaC05g27595 Brassica carinata HOM05D005985 ORTHO05D007403 1.3e-87 327.0 220 69.1
C05p35800 Brassica napus HOM05D005985 ORTHO05D007403 6.2e-87 324.7 220 68.6
Migut.O00392 Erythranthe guttata HOM05D005985 ORTHO05D007403 6.2e-87 324.7 223 70.4
BolC5t32296H Brassica oleracea HOM05D005985 ORTHO05D007403 1.8e-86 323.2 220 68.6
Nn4g25416 Nelumbo nucifera HOM05D005985 ORTHO05D007403 4.0e-86 322.0 330 50.9
BcaB02g10720 Brassica carinata HOM05D005985 ORTHO05D007403 5.3e-86 321.6 220 68.2
BraA05t21027Z Brassica rapa HOM05D005985 ORTHO05D007403 9.9e-85 317.4 235 65.1
Migut.G00012 Erythranthe guttata HOM05D005985 ORTHO05D007403 9.9e-85 317.4 220 70.5
BraA05t20750Z Brassica rapa HOM05D005985 ORTHO05D007403 2.9e-84 315.8 235 64.3
Zm00001eb328770 Zea mays HOM05D005985 ORTHO05D007403 2.9e-84 315.8 230 64.3
Os07g0638400 Oryza sativa ssp. japonica HOM05D005985 ORTHO05D007403 1.4e-83 313.5 219 65.3
Pp3c22_8470 Physcomitrium patens HOM05D005985 ORTHO05D007403 2.4e-83 312.8 217 65.9
SMO367G0796 Selaginella moellendorffii HOM05D005985 ORTHO05D007403 9.3e-83 310.8 219 62.6
SEGI_14508 Sequoiadendron giganteum HOM05D005985 ORTHO05D007403 7.9e-82 307.8 215 63.3
CAN.G546.41 Capsicum annuum HOM05D005985 ORTHO05D007403 5.3e-78 295.0 220 65.9
Mapoly0057s0102 Marchantia polymorpha HOM05D005985 ORTHO05D007403 3.8e-76 288.9 217 61.3
COL.COLO4_34540 Corchorus olitorius HOM05D005985 ORTHO05D007403 1.8e-73 280.0 167 79.0
AagrBONN_evm.TU.Sc2ySwM_228.1443 Anthoceros agrestis HOM05D005985 ORTHO05D007403 3.0e-73 279.3 219 59.4
CBR_g8949 Chara braunii HOM05D005985 ORTHO05D007403 3.9e-73 278.9 216 60.6
Pp3c10_21340 Physcomitrium patens HOM05D005985 ORTHO05D007403 3.1e-70 269.2 214 56.5
Mapoly0042s0090 Marchantia polymorpha HOM05D005985 ORTHO05D007403 6.9e-70 268.1 214 56.1
Pp3c20_21100 Physcomitrium patens HOM05D005985 ORTHO05D007403 3.4e-69 265.8 214 55.1
AagrBONN_evm.TU.Sc2ySwM_117.1081 Anthoceros agrestis HOM05D005985 ORTHO05D007403 1.3e-68 263.8 215 54.9
SMO147G0228 Selaginella moellendorffii HOM05D005985 ORTHO05D007403 3.8e-68 262.3 216 53.7
SEGI_03003 Sequoiadendron giganteum HOM05D005985 ORTHO05D007403 1.4e-67 260.4 214 53.7
PRCOL_00004927 Prasinoderma coloniale HOM05D005985 ORTHO05D007403 1.1e-59 234.2 218 49.1
Glyma.05G133500 Glycine max HOM05D005985 ORTHO05D007403 1.4e-59 233.8 108 98.1
AagrBONN_evm.TU.Sc2ySwM_228.1273 Anthoceros agrestis HOM05D005985 ORTHO05D007403 6.7e-57 224.9 218 47.7
Thecc.04G309900 Theobroma cacao HOM05D005985 ORTHO05D007403 1.9e-51 206.8 130 76.2
Glyma.05G133466 Glycine max HOM05D005985 ORTHO05D007403 5.5e-51 205.3 108 93.5
Cfa026758 Carpinus fangiana HOM05D005985 ORTHO05D007403 1.0e-49 201.1 224 44.2
AagrBONN_evm.TU.Sc2ySwM_344.4472 Anthoceros agrestis HOM05D005985 ORTHO05D007403 6.5e-44 181.8 209 40.7
Haze_27189 Corylus avellana HOM05D005985 ORTHO05D007403 7.2e-43 178.3 213 44.1
GSVIVG01034909001 Vitis vinifera HOM05D005985 ORTHO05D007403 2.0e-37 160.2 116 62.1
Nn1g05419 Nelumbo nucifera HOM05D005985 ORTHO05D007403 2.2e-36 156.8 89 74.2
MD16G1139600 Malus domestica HOM05D005985 ORTHO05D007403 9.4e-35 151.4 186 45.7
C06p21300 Brassica napus HOM05D005985 ORTHO05D007403 2.3e-33 146.7 87 69.0
Nn1g05808 Nelumbo nucifera HOM05D005985 ORTHO05D007403 7.5e-32 141.7 106 62.3
GSVIVG01017665001 Vitis vinifera HOM05D005985 ORTHO05D007403 9.1e-30 134.8 98 65.3
Gorai.001G249700 Gossypium raimondii HOM05D005985 ORTHO05D007403 4.4e-24 115.9 77 64.9
Gohir.D01G126866 Gossypium hirsutum HOM05D005985 ORTHO05D007403 3.7e-23 112.8 74 66.2
Gorai.002G157500 Gossypium raimondii HOM05D005985 ORTHO05D007403 4.5e-21 105.9 74 62.2
Nitab4.5_0000020g0330 Nicotiana tabacum HOM05D003127 ORTHO05D003709 7.7e-21 105.1 189 32.3
Sopen01g003280 Solanum pennellii HOM05D003127 ORTHO05D003709 7.7e-21 105.1 199 32.2
SGA_v2.0_scaffold35G14000 Striga asiatica HOM05D003127 ORTHO05D003709 7.7e-21 105.1 188 32.4
CAN.G574.32 Capsicum annuum HOM05D003127 ORTHO05D003709 1.7e-20 104.0 189 31.7
Nitab4.5_0010740g0010 Nicotiana tabacum HOM05D003127 ORTHO05D003709 2.3e-20 103.6 189 31.7
Solyc01g007740.4 Solanum lycopersicum HOM05D003127 ORTHO05D003709 2.3e-20 103.6 199 31.7
PGSC0003DMG400016387 Solanum tuberosum HOM05D003127 ORTHO05D003709 2.3e-20 103.6 190 33.2
Manes.09G047500 Manihot esculenta HOM05D003127 ORTHO05D003709 3.8e-20 102.8 180 32.2
Cc03_g00310 Coffea canephora HOM05D005985 ORTHO05D007403 5.0e-20 102.4 62 79.0
Peaxi162Scf00211g01734 Petunia axillaris HOM05D003127 ORTHO05D003709 8.6e-20 101.7 189 31.7
Nitab4.5_0004677g0020 Nicotiana tabacum HOM05D003127 ORTHO05D003709 1.1e-19 101.3 189 31.2
Solyc10g082030.2 Solanum lycopersicum HOM05D003127 ORTHO05D003709 1.1e-19 101.3 189 31.2
Sopen10g032540 Solanum pennellii HOM05D003127 ORTHO05D003709 1.1e-19 101.3 189 31.2
PGSC0003DMG400028238 Solanum tuberosum HOM05D003127 ORTHO05D003709 1.1e-19 101.3 189 31.2
MSTRG.5906 Avicennia marina HOM05D003127 ORTHO05D003709 1.5e-19 100.9 180 31.1
arahy.Tifrunner.gnm1.ann1.3IK0CY Arachis hypogaea HOM05D003127 ORTHO05D003709 1.9e-19 100.5 225 30.2
arahy.Tifrunner.gnm1.ann1.PKQH6A Arachis hypogaea HOM05D003127 ORTHO05D003709 1.9e-19 100.5 225 30.2
CAN.G1245.19 Capsicum annuum HOM05D003127 ORTHO05D003709 2.5e-19 100.1 189 31.2
Nitab4.5_0001287g0150 Nicotiana tabacum HOM05D003127 ORTHO05D003709 2.5e-19 100.1 189 31.2
Phvul.001G194100 Phaseolus vulgaris HOM05D003127 ORTHO05D003709 7.3e-19 98.6 189 30.7
Cpa.g.sc104.57 Carica papaya HOM05D003127 ORTHO05D003709 9.5e-19 98.2 180 31.1
THA.LOC104809959 Tarenaya hassleriana HOM05D003127 ORTHO05D003709 9.5e-19 98.2 180 31.1
VMungo1383G0691 Vigna mungo HOM05D003127 ORTHO05D003709 9.5e-19 98.2 189 30.2
AUR62037040 Chenopodium quinoa HOM05D003127 ORTHO05D003709 1.2e-18 97.8 180 30.6
Dinv31747 Davidia involucrata HOM05D003127 ORTHO05D003709 1.2e-18 97.8 188 30.3
Glyma.02G198400 Glycine max HOM05D003127 ORTHO05D003709 1.2e-18 97.8 189 30.7
Phvul.001G194200 Phaseolus vulgaris HOM05D003127 ORTHO05D003709 1.2e-18 97.8 221 29.4
Hund03845 Selenicereus undatus HOM05D003127 ORTHO05D003709 1.2e-18 97.8 180 31.1
AUR62006270 Chenopodium quinoa HOM05D003127 ORTHO05D003709 1.6e-18 97.4 180 30.6
Ciclev10012459m.g Citrus clementina HOM05D003127 ORTHO05D003709 1.6e-18 97.4 180 31.7
Glyma.10G078400 Glycine max HOM05D003127 ORTHO05D003709 2.1e-18 97.1 218 29.4
MD12G1037300 Malus domestica HOM05D003127 ORTHO05D003709 2.1e-18 97.1 218 28.4
Sc20g0006650 Simmondsia chinensis HOM05D003127 ORTHO05D003709 2.1e-18 97.1 180 31.1
Ca_14603_v3 Cicer arietinum L. HOM05D003127 ORTHO05D002183 2.8e-18 96.7 189 30.2
Prupe.7G097900 Prunus persica HOM05D003127 ORTHO05D003709 2.8e-18 96.7 180 30.6
Atru.chr8.1389 Acer truncatum HOM05D003127 ORTHO05D003709 3.6e-18 96.3 180 30.6
Aa31LG3G5040 Aethionema arabicum HOM05D003127 ORTHO05D003709 4.7e-18 95.9 180 31.1
Migut.L01836 Erythranthe guttata HOM05D003127 ORTHO05D003709 4.7e-18 95.9 180 31.1
Hma1.2p1_1442F.1_g283750 Hydrangea macrophylla HOM05D003127 ORTHO05D003709 4.7e-18 95.9 180 30.0
Mapoly0014s0048 Marchantia polymorpha HOM05D003127 ORTHO05D003709 6.1e-18 95.5 197 28.9
HanXRQChr13g0398251 Helianthus annuus HOM05D003127 ORTHO05D003709 1.0e-17 94.7 180 30.6
Eucgr.K02606 Eucalyptus grandis HOM05D003127 ORTHO05D003709 1.8e-17 94.0 189 29.6
Hund19871 Selenicereus undatus HOM05D003127 ORTHO05D003709 2.3e-17 93.6 180 30.6
MCO10G030 Micromonas commoda HOM05D003127 ORTHO05D003709 8.9e-17 91.7 197 31.5
SMO137G0124 Selaginella moellendorffii HOM05D003127 ORTHO05D003709 5.7e-16 89.0 180 27.8
Haze_27581 Corylus avellana HOM05D003127 ORTHO05D003709 4.9e-15 85.9 196 27.6
Cre06.g257601 Chlamydomonas reinhardtii HOM05D003127 ORTHO05D003709 7.0e-14 82.0 150 31.3
Cre17.g743897 Chlamydomonas reinhardtii HOM05D003127 ORTHO05D003709 1.6e-13 80.9 193 28.0
Glyma.19G198200 Glycine max HOM05D003127 ORTHO05D003709 1.9e-11 73.9 218 23.9
Lalb_Chr13g0293491 Lupinus albus HOM05D005985 ORTHO05D007403 4.3e-11 72.8 39 76.9
Lalb_Chr13g0293501 Lupinus albus HOM05D005985 ORTHO05D007403 7.3e-11 72.0 44 79.5
BcaC01g01496 Brassica carinata HOM05D005985 ORTHO05D007403 1.8e-09 67.4 76 44.7
Nn6g35647 Nelumbo nucifera HOM05D004597 ORTHO05D005629 5.8e-08 62.4 199 23.6


User provided reference genes

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