Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G083451 Glycine max HOM05D000727 ORTHO05D000541 6.8e-60 233.8 118 100.0
Haze_05566 Corylus avellana HOM05D000727 ORTHO05D000541 8.1e-13 77.4 41 82.9
Rhsim13G0194000 Rhododendron simsii HOM05D000727 ORTHO05D000541 1.1e-12 77.0 67 58.2
Dinv32274 Davidia involucrata HOM05D000727 ORTHO05D000541 1.4e-12 76.6 41 82.9
arahy.Tifrunner.gnm1.ann1.IQ8H38 Arachis hypogaea HOM05D000727 ORTHO05D000541 1.8e-12 76.3 41 80.5
arahy.Tifrunner.gnm1.ann1.JMJW5B Arachis hypogaea HOM05D000727 ORTHO05D000541 1.8e-12 76.3 41 80.5
Dinv30718 Davidia involucrata HOM05D000727 ORTHO05D000541 1.8e-12 76.3 41 80.5
Glyma.05G129000 Glycine max HOM05D000727 ORTHO05D000541 1.8e-12 76.3 41 80.5
Glyma.08G083600 Glycine max HOM05D000727 ORTHO05D000541 1.8e-12 76.3 41 80.5
Hma1.2p1_0137F.1_g062490 Hydrangea macrophylla HOM05D000727 ORTHO05D000541 1.8e-12 76.3 45 73.3
Manes.15G119950 Manihot esculenta HOM05D000727 ORTHO05D000541 1.8e-12 76.3 41 80.5
Nn4g26544 Nelumbo nucifera HOM05D000727 ORTHO05D000541 1.8e-12 76.3 41 80.5
QL05p059002 Quercus lobata HOM05D000727 ORTHO05D000541 1.8e-12 76.3 41 80.5
GSVIVG01021424001 Vitis vinifera HOM05D000727 ORTHO05D000541 1.8e-12 76.3 41 80.5
Gohir.D10G040200 Gossypium hirsutum HOM05D000727 ORTHO05D000541 3.1e-12 75.5 41 80.5
Gorai.011G042300 Gossypium raimondii HOM05D000727 ORTHO05D000541 3.1e-12 75.5 41 80.5
Thecc.06G153100 Theobroma cacao HOM05D000727 ORTHO05D000541 3.1e-12 75.5 41 80.5
MSTRG.7474 Avicennia marina HOM05D000727 ORTHO05D000541 4.0e-12 75.1 41 78.0
VMungo0251G1386 Vigna mungo HOM05D000727 ORTHO05D000541 4.0e-12 75.1 42 76.2
Migut.M00925 Erythranthe guttata HOM05D000727 ORTHO05D000541 5.3e-12 74.7 41 75.6
Atru.chr1.2874 Acer truncatum HOM05D000727 ORTHO05D000541 6.9e-12 74.3 41 78.0
CAN.G588.23 Capsicum annuum HOM05D000727 ORTHO05D000541 6.9e-12 74.3 41 75.6
Duzib160G0640 Durio zibethinus HOM05D000727 ORTHO05D000541 6.9e-12 74.3 41 80.5
Potri.004G131400 Populus trichocarpa HOM05D000727 ORTHO05D000541 6.9e-12 74.3 41 75.6
COL.COLO4_38297 Corchorus olitorius HOM05D000727 ORTHO05D000541 9.0e-12 73.9 41 78.0
Duzib235G1433 Durio zibethinus HOM05D000727 ORTHO05D000541 9.0e-12 73.9 41 80.5
Eucgr.D00306 Eucalyptus grandis HOM05D000727 ORTHO05D000541 9.0e-12 73.9 41 75.6
Gohir.A10G039400 Gossypium hirsutum HOM05D000727 ORTHO05D000541 9.0e-12 73.9 41 80.5
Actinidia16722 Actinidia chinensis HOM05D000727 ORTHO05D000541 1.2e-11 73.6 41 78.0
MELO3C007145.2 Cucumis melo HOM05D000727 ORTHO05D000541 1.2e-11 73.6 41 73.2
CsaV3_6G051620 Cucumis sativus L. HOM05D000727 ORTHO05D000541 1.2e-11 73.6 41 73.2
TWI73G0278 Tripterygium wilfordii HOM05D000727 ORTHO05D000541 1.2e-11 73.6 41 78.0
TAR629G3183 Trochodendron aralioides HOM05D000727 ORTHO05D000541 1.2e-11 73.6 41 78.0
CiPaw.10G093100 Carya illinoinensis HOM05D000727 ORTHO05D000541 1.5e-11 73.2 41 75.6
PGR042G2182 Punica granatum HOM05D000727 ORTHO05D000541 1.5e-11 73.2 41 78.0
SalBow8G1768 Salvia bowleyana HOM05D000736 ORTHO05D002171 1.5e-11 73.2 41 78.0
Cc09_g08820 Coffea canephora HOM05D000727 ORTHO05D000541 2.0e-11 72.8 41 75.6
Sabra04G0086500 Salix brachista HOM05D000727 ORTHO05D000541 2.0e-11 72.8 67 55.2
Sopen02g009310 Solanum pennellii HOM05D000727 ORTHO05D000541 2.0e-11 72.8 41 75.6
TAR627G0220 Trochodendron aralioides HOM05D000727 ORTHO05D000541 2.0e-11 72.8 41 75.6
HanXRQChr15g0480191 Helianthus annuus HOM05D000727 ORTHO05D000541 2.6e-11 72.4 41 75.6
SGA_v2.0_scaffold1G00155 Striga asiatica HOM05D000736 ORTHO05D002171 2.6e-11 72.4 41 75.6
Actinidia19515 Actinidia chinensis HOM05D000727 ORTHO05D000541 3.4e-11 72.0 67 55.2
CANSAT35G1354 Cannabis sativa HOM05D000727 ORTHO05D000541 3.4e-11 72.0 41 78.0
Ca_30687_v3 Cicer arietinum L. HOM05D000727 ORTHO05D000541 3.4e-11 72.0 41 78.0
Ciclev10017037m.g Citrus clementina HOM05D000727 ORTHO05D000541 3.4e-11 72.0 53 66.0
Lsat_1_v5_gn_7_30561 Lactuca sativa HOM05D000727 ORTHO05D000541 3.4e-11 72.0 41 73.2
Phvul.002G194900 Phaseolus vulgaris HOM05D000727 ORTHO05D000541 3.4e-11 72.0 88 45.5
Oeu042440.2 Olea europaea HOM05D000727 ORTHO05D000541 4.5e-11 71.6 41 70.7
Prupe.4G078100 Prunus persica HOM05D000727 ORTHO05D000541 4.5e-11 71.6 48 66.7
ClCG01G024500 Citrullus lanatus HOM05D000727 ORTHO05D000541 5.8e-11 71.2 41 70.7
Manes.17G068300 Manihot esculenta HOM05D000727 ORTHO05D000541 5.8e-11 71.2 41 73.2
TPR.G4879 Trifolium pratense HOM05D000727 ORTHO05D000541 5.8e-11 71.2 41 73.2
TWI09G1261 Tripterygium wilfordii HOM05D000727 ORTHO05D000541 5.8e-11 71.2 41 75.6
TAR629G1718 Trochodendron aralioides HOM05D000727 ORTHO05D000541 5.8e-11 71.2 43 74.4
vmacro13907 Vaccinium macrocarpon HOM05D000727 ORTHO05D000541 5.8e-11 71.2 59 61.0
Lalb_Chr07g0188681 Lupinus albus HOM05D000727 ORTHO05D000541 7.6e-11 70.9 41 70.7
RcHm_v2.0_Chr5g0013561 Rosa chinensis HOM05D000727 ORTHO05D000541 7.6e-11 70.9 42 66.7
THA.LOC104814287 Tarenaya hassleriana HOM05D000727 ORTHO05D000541 7.6e-11 70.9 48 64.6
AT2G34450 Arabidopsis thaliana HOM05D000727 ORTHO05D000541 9.9e-11 70.5 48 60.4
DCAR_027945 Daucus carota HOM05D000727 ORTHO05D000541 9.9e-11 70.5 45 64.4
FAN16G1096 Fragaria x ananassa HOM05D000727 ORTHO05D000541 9.9e-11 70.5 42 71.4
FAN21G3414 Fragaria x ananassa HOM05D000727 ORTHO05D000541 9.9e-11 70.5 42 71.4
FvH4_3g05880 Fragaria vesca HOM05D000727 ORTHO05D000541 1.3e-10 70.1 41 73.2
FAN11G3699 Fragaria x ananassa HOM05D000727 ORTHO05D000541 1.3e-10 70.1 41 73.2
Lj4g0004315 Lotus japonicus HOM05D000727 ORTHO05D000541 1.7e-10 69.7 67 50.7
AL4G30420 Arabidopsis lyrata HOM05D000727 ORTHO05D000541 2.2e-10 69.3 41 68.3
CDE09G0361 Ceratophyllum demersum HOM05D000727 ORTHO05D000541 2.2e-10 69.3 41 70.7
Medtr4g094622 Medicago truncatula HOM05D000727 ORTHO05D000541 2.2e-10 69.3 88 43.2
PSO541G1611 Papaver somniferum HOM05D000727 ORTHO05D000541 2.2e-10 69.3 41 68.3
PSO675G7623 Papaver somniferum HOM05D000727 ORTHO05D000541 2.2e-10 69.3 41 68.3
CiPaw.09G125900 Carya illinoinensis HOM05D000727 ORTHO05D000541 2.9e-10 68.9 38 76.3
C04p63780 Brassica napus HOM05D000727 ORTHO05D000541 8.4e-10 67.4 79 44.3
BolC4t27844H Brassica oleracea HOM05D000727 ORTHO05D000541 8.4e-10 67.4 79 44.3
BraA04t18141Z Brassica rapa HOM05D000727 ORTHO05D000541 8.4e-10 67.4 79 44.3
MD05G1286800 Malus domestica HOM05D000727 ORTHO05D000541 1.1e-09 67.0 48 62.5
BcaB06g28770 Brassica carinata HOM05D000727 ORTHO05D000541 1.4e-09 66.6 79 46.8
Sed0017094 Sechium edule HOM05D000727 ORTHO05D000541 1.4e-09 66.6 48 64.6
Aa31LG10G6930 Aethionema arabicum HOM05D000727 ORTHO05D000541 1.9e-09 66.2 67 47.8
Sp4g16720 Schrenkiella parvula HOM05D000727 ORTHO05D000541 1.9e-09 66.2 79 41.8
AUR62030237 Chenopodium quinoa HOM05D000727 ORTHO05D000541 2.4e-09 65.9 35 77.1
ECA236G3170 Erigeron canadensis HOM05D004561 ORTHO05D005315 2.4e-09 65.9 41 65.9
MBI07_g15282_MAGBIO Magnolia biondii HOM05D000727 ORTHO05D000541 3.2e-09 65.5 41 65.9
unitig_26.g10106 Utricularia gibba HOM05D000736 ORTHO05D002171 3.2e-09 65.5 41 65.9
A04p26370 Brassica napus HOM05D000727 ORTHO05D000541 4.2e-09 65.1 75 46.7
Carub.0004s1612 Capsella rubella HOM05D000727 ORTHO05D000541 4.2e-09 65.1 79 41.8
AUR62027603 Chenopodium quinoa HOM05D000727 ORTHO05D000541 4.2e-09 65.1 41 68.3
EL10As10g23972 Beta vulgaris HOM05D000727 ORTHO05D000541 9.3e-09 63.9 41 63.4
CARHR128540 Cardamine hirsuta HOM05D000727 ORTHO05D000541 9.3e-09 63.9 79 40.5
Thhalv10017360m.g Eutrema salsugineum HOM05D000727 ORTHO05D000541 9.3e-09 63.9 80 43.8
Sc05g0006400 Simmondsia chinensis HOM05D000727 ORTHO05D000541 9.3e-09 63.9 34 76.5
HPP92_023289 Vanilla planifolia HOM05D000727 ORTHO05D000541 1.2e-08 63.5 71 42.3
Os01g0666200 Oryza sativa ssp. japonica HOM05D000727 ORTHO05D000541 1.6e-08 63.2 41 58.5
MD10G1264300 Malus domestica HOM05D000727 ORTHO05D000541 7.9e-08 60.8 48 56.2
ATR0585G098 Amborella trichopoda HOM05D000727 ORTHO05D000541 2.3e-07 59.3 41 61.0
Zm00001eb157450 Zea mays HOM05D000727 ORTHO05D000541 2.3e-07 59.3 41 56.1
Peaxi162Scf01376g00015 Petunia axillaris HOM05D000727 ORTHO05D000541 6.7e-07 57.8 27 88.9
Aqoxy1G01750 Aquilegia oxysepala HOM05D000727 ORTHO05D000541 8.7e-07 57.4 34 70.6


User provided reference genes

Program Settings