Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G079300 Glycine max HOM05D005284 ORTHO05D006609 1.8e-164 582.4 278 100.0
Glyma.05G124100 Glycine max HOM05D005284 ORTHO05D006609 4.5e-155 551.2 279 95.7
VMungo0251G0080 Vigna mungo HOM05D005284 ORTHO05D006609 1.1e-140 503.4 278 88.1
Phvul.002G201500 Phaseolus vulgaris HOM05D005284 ORTHO05D006609 1.8e-140 502.7 278 87.4
Medtr4g094452 Medicago truncatula HOM05D005284 ORTHO05D006609 2.0e-134 482.6 277 81.6
Lalb_Chr12g0208701 Lupinus albus HOM05D005284 ORTHO05D006609 3.7e-133 478.4 276 81.2
Lj4g0006881 Lotus japonicus HOM05D005284 ORTHO05D006609 6.0e-131 471.1 276 81.5
Psat7g094280 Pisum sativum HOM05D005284 ORTHO05D006609 1.0e-130 470.3 278 78.4
arahy.Tifrunner.gnm1.ann1.06Y4PY Arachis hypogaea HOM05D005284 ORTHO05D006609 3.9e-130 468.4 277 81.6
Ca_18306_v3 Cicer arietinum L. HOM05D005284 ORTHO05D006609 4.4e-126 454.9 282 77.0
Ciclev10016195m.g Citrus clementina HOM05D005284 ORTHO05D006609 1.8e-119 433.0 280 73.2
Atru.chr10.695 Acer truncatum HOM05D005284 ORTHO05D006609 4.0e-119 431.8 280 73.6
Prupe.4G100600 Prunus persica HOM05D005284 ORTHO05D006609 5.8e-118 427.9 277 75.1
QL05p064527 Quercus lobata HOM05D005284 ORTHO05D006609 9.9e-118 427.2 276 72.8
CiPaw.09G147600 Carya illinoinensis HOM05D005284 ORTHO05D006609 2.9e-117 425.6 277 72.2
TWI38G1381 Tripterygium wilfordii HOM05D005284 ORTHO05D006609 2.9e-117 425.6 277 72.2
CANSAT78G1346 Cannabis sativa HOM05D005284 ORTHO05D006609 6.4e-117 424.5 279 71.7
Cfa000771 Carpinus fangiana HOM05D005284 ORTHO05D006609 6.4e-117 424.5 276 72.8
Gorai.011G006700 Gossypium raimondii HOM05D005284 ORTHO05D006609 6.4e-117 424.5 279 72.4
Gohir.D10G005900 Gossypium hirsutum HOM05D005284 ORTHO05D006609 8.3e-117 424.1 279 72.4
MD10G1243300 Malus domestica HOM05D005284 ORTHO05D006609 8.3e-117 424.1 277 74.4
Duzib235G1425 Durio zibethinus HOM05D005284 ORTHO05D006609 1.4e-116 423.3 279 72.0
MD05G1265300 Malus domestica HOM05D005284 ORTHO05D006609 4.1e-116 421.8 277 73.6
RcHm_v2.0_Chr5g0018081 Rosa chinensis HOM05D005284 ORTHO05D006609 5.4e-116 421.4 277 72.9
Thecc.06G009000 Theobroma cacao HOM05D005284 ORTHO05D006609 5.4e-116 421.4 281 72.2
Gohir.A10G005900 Gossypium hirsutum HOM05D005284 ORTHO05D006609 2.7e-115 419.1 279 71.7
Dinv04290 Davidia involucrata HOM05D005284 ORTHO05D006609 3.5e-115 418.7 276 72.1
FvH4_3g11170 Fragaria vesca HOM05D005284 ORTHO05D006609 1.7e-114 416.4 277 71.8
Potri.011G157500 Populus trichocarpa HOM05D005284 ORTHO05D006609 3.9e-114 415.2 277 70.8
Actinidia29265 Actinidia chinensis HOM05D005284 ORTHO05D006609 2.5e-113 412.5 276 71.4
Lsat_1_v5_gn_5_75320 Lactuca sativa HOM05D005284 ORTHO05D006609 2.5e-113 412.5 276 70.3
Sopen02g006280 Solanum pennellii HOM05D005284 ORTHO05D006609 5.6e-113 411.4 278 69.4
Cpa.g.sc489.2 Carica papaya HOM05D005284 ORTHO05D006609 7.3e-113 411.0 279 70.3
vmacro03466 Vaccinium macrocarpon HOM05D005284 ORTHO05D006609 7.3e-113 411.0 276 70.7
Rhsim13G0125000 Rhododendron simsii HOM05D005284 ORTHO05D006609 1.2e-112 410.2 276 71.0
HanXRQChr12g0359761 Helianthus annuus HOM05D005284 ORTHO05D006609 1.6e-112 409.8 276 68.8
Sed0002797 Sechium edule HOM05D005284 ORTHO05D006609 6.2e-112 407.9 276 69.2
TPR.G23781 Trifolium pratense HOM05D005284 ORTHO05D006609 1.1e-111 407.1 269 73.2
DCAR_000834 Daucus carota HOM05D005284 ORTHO05D006609 1.8e-111 406.4 277 70.0
CAN.G39.30 Capsicum annuum HOM05D005284 ORTHO05D006609 2.4e-111 406.0 278 68.7
Cc08_g07170 Coffea canephora HOM05D005284 ORTHO05D006609 5.2e-111 404.8 277 70.4
CsaV3_6G052590 Cucumis sativus L. HOM05D005284 ORTHO05D006609 1.2e-110 403.7 276 67.4
MELO3C007049.2 Cucumis melo HOM05D005284 ORTHO05D006609 2.6e-110 402.5 276 66.7
Migut.M01924 Erythranthe guttata HOM05D005284 ORTHO05D006609 2.6e-110 402.5 287 67.2
TAR626G0222 Trochodendron aralioides HOM05D005284 ORTHO05D006609 2.6e-110 402.5 275 69.5
THA.LOC104812070 Tarenaya hassleriana HOM05D005284 ORTHO05D006609 4.4e-110 401.7 279 68.8
MSTRG.7559 Avicennia marina HOM05D005284 ORTHO05D006609 1.7e-109 399.8 278 68.0
COL.COLO4_26880 Corchorus olitorius HOM05D005284 ORTHO05D006609 8.4e-109 397.5 322 63.0
CARHR178630 Cardamine hirsuta HOM05D005284 ORTHO05D006609 1.4e-108 396.7 279 68.1
Aa31LG9G8740 Aethionema arabicum HOM05D005284 ORTHO05D006609 2.4e-108 396.0 279 68.5
A06p47190 Brassica napus HOM05D005284 ORTHO05D006609 9.2e-108 394.0 279 66.7
Thhalv10000956m.g Eutrema salsugineum HOM05D005284 ORTHO05D006609 1.6e-107 393.3 280 66.4
BraA06t27590Z Brassica rapa HOM05D005284 ORTHO05D006609 3.5e-107 392.1 279 66.3
BcaB07g30944 Brassica carinata HOM05D005284 ORTHO05D006609 6.0e-107 391.3 279 67.0
BcaC06g34553 Brassica carinata HOM05D005284 ORTHO05D006609 6.0e-107 391.3 279 66.7
C07p27240 Brassica napus HOM05D005284 ORTHO05D006609 6.0e-107 391.3 279 66.7
BolC7t43252H Brassica oleracea HOM05D005284 ORTHO05D006609 6.0e-107 391.3 279 66.7
BcaC04g21829 Brassica carinata HOM05D005284 ORTHO05D006609 7.8e-107 391.0 279 66.7
Sp2g09280 Schrenkiella parvula HOM05D005284 ORTHO05D006609 1.0e-106 390.6 278 66.9
Ah.01g003600 Amaranthus hybridus HOM05D005284 ORTHO05D006609 6.6e-106 387.9 282 67.4
Carub.0008s0404 Capsella rubella HOM05D005284 ORTHO05D006609 6.6e-106 387.9 279 66.3
CDE02G0074 Ceratophyllum demersum HOM05D005284 ORTHO05D006609 6.6e-106 387.9 266 68.4
C09p26950 Brassica napus HOM05D005284 ORTHO05D006609 1.5e-105 386.7 280 66.4
BolC9t55580H Brassica oleracea HOM05D005284 ORTHO05D006609 1.5e-105 386.7 280 66.4
A09p21140 Brassica napus HOM05D005284 ORTHO05D006609 1.9e-105 386.3 280 66.4
BraA09t37720Z Brassica rapa HOM05D005284 ORTHO05D006609 1.9e-105 386.3 280 66.4
Eucgr.D01014 Eucalyptus grandis HOM05D005284 ORTHO05D006609 2.5e-105 386.0 279 67.0
PSO541G1959 Papaver somniferum HOM05D005284 ORTHO05D006609 3.3e-105 385.6 282 65.6
PSO675G4367 Papaver somniferum HOM05D005284 ORTHO05D006609 3.3e-105 385.6 282 65.6
BcaC06g31615 Brassica carinata HOM05D005284 ORTHO05D006609 2.1e-104 382.9 275 66.2
Aqoxy1G01504 Aquilegia oxysepala HOM05D005284 ORTHO05D006609 3.6e-104 382.1 286 64.7
Aqoxy1G01508 Aquilegia oxysepala HOM05D005284 ORTHO05D006609 3.6e-104 382.1 286 64.7
AL8G15400 Arabidopsis lyrata HOM05D005284 ORTHO05D006609 3.6e-104 382.1 279 65.2
SalBow8G0467 Salvia bowleyana HOM05D005284 ORTHO05D006609 8.1e-104 380.9 313 61.0
Nn7g37791 Nelumbo nucifera HOM05D005284 ORTHO05D006609 1.8e-103 379.8 278 65.8
SalBow3G1375 Salvia bowleyana HOM05D005284 ORTHO05D006609 3.1e-103 379.0 304 61.8
CDE05G2614 Ceratophyllum demersum HOM05D005284 ORTHO05D006609 4.0e-103 378.6 284 64.4
EL10Ac9g22329 Beta vulgaris HOM05D005284 ORTHO05D006609 2.6e-102 375.9 279 65.2
ECA234G4512 Erigeron canadensis HOM05D005284 ORTHO05D006609 4.4e-102 375.2 258 68.2
Manes.14G126000 Manihot esculenta HOM05D005284 ORTHO05D006609 3.8e-101 372.1 237 73.8
Lj2C336G9 Lonicera japonica HOM05D005284 ORTHO05D006609 1.1e-100 370.5 276 66.3
Oeu000506.1 Olea europaea HOM05D005284 ORTHO05D006609 1.4e-100 370.2 352 55.1
Sabra11G0142700 Salix brachista HOM05D005284 ORTHO05D006609 9.3e-100 367.5 237 72.2
ATR0763G041 Amborella trichopoda HOM05D005284 ORTHO05D006609 3.0e-98 362.5 279 62.0
Nitab4.5_0000607g0120 Nicotiana tabacum HOM05D005284 ORTHO05D006609 8.7e-98 360.9 389 48.8
Nitab4.5_0000100g0010 Nicotiana tabacum HOM05D005284 ORTHO05D006609 6.2e-96 354.8 382 49.5
HPP92_000943 Vanilla planifolia HOM05D005284 ORTHO05D006609 6.2e-96 354.8 281 60.9
Sc04g0004240 Simmondsia chinensis HOM05D005284 ORTHO05D006609 1.2e-94 350.5 235 71.5
Os03g0780900 Oryza sativa ssp. japonica HOM05D005284 ORTHO05D006609 1.3e-93 347.1 305 55.7
FAN21G1306 Fragaria x ananassa HOM05D005284 ORTHO05D006609 4.6e-91 338.6 277 62.1
Peaxi162Scf00155g00513 Petunia axillaris HOM05D005284 ORTHO05D006609 4.6e-91 338.6 277 61.0
SEGI_24201 Sequoiadendron giganteum HOM05D005284 ORTHO05D006609 6.0e-91 338.2 258 60.1
FAN16G1000 Fragaria x ananassa HOM05D005284 ORTHO05D006609 1.0e-90 337.4 277 61.4
unitig_748.g7349 Utricularia gibba HOM05D005284 ORTHO05D006609 1.0e-90 337.4 287 58.9
FAN25G2940 Fragaria x ananassa HOM05D005284 ORTHO05D006609 1.8e-90 336.7 277 61.4
MBI18_g27137_MAGBIO Magnolia biondii HOM05D005284 ORTHO05D006609 3.7e-88 328.9 322 53.7
SMO364G0300 Selaginella moellendorffii HOM05D005284 ORTHO05D006609 6.9e-87 324.7 287 54.7
SGA_v2.0_scaffold1G00293 Striga asiatica HOM05D006189 ORTHO05D007765 2.6e-86 322.8 236 66.5
GSVIVG01021778001 Vitis vinifera HOM05D005284 ORTHO05D006609 2.5e-84 316.2 184 81.0
Mapoly0083s0001 Marchantia polymorpha HOM05D005284 ORTHO05D006609 6.9e-79 298.1 261 57.5
AT5G44450 Arabidopsis thaliana HOM05D005284 ORTHO05D006609 2.5e-76 289.7 206 66.0
Solyc02g021700.4 Solanum lycopersicum HOM05D005284 ORTHO05D006609 1.3e-72 277.3 188 68.1
ClCG01G025350 Citrullus lanatus HOM05D005284 ORTHO05D006609 1.6e-72 276.9 321 47.0
PGR083G0243 Punica granatum HOM05D005284 ORTHO05D006609 2.2e-72 276.6 220 60.0
AUR62042202 Chenopodium quinoa HOM05D005284 ORTHO05D006609 9.0e-71 271.2 229 57.6
Zm00001eb059610 Zea mays HOM05D005284 ORTHO05D006609 5.0e-69 265.4 304 47.0
CBR_g19259 Chara braunii HOM05D005284 ORTHO05D006609 6.5e-69 265.0 268 49.6
AUR62033057 Chenopodium quinoa HOM05D005284 ORTHO05D006609 2.1e-67 260.0 189 65.1
MCO11G684 Micromonas commoda HOM05D005284 ORTHO05D006609 5.1e-66 255.4 253 49.8
Dinv04294 Davidia involucrata HOM05D005284 ORTHO05D006609 4.2e-60 235.7 140 76.4
PRCOL_00002523 Prasinoderma coloniale HOM05D005284 ORTHO05D006609 1.2e-59 234.2 268 45.9
Cre06.g274400 Chlamydomonas reinhardtii HOM05D005284 ORTHO05D006609 1.8e-58 230.3 252 42.9
AagrBONN_evm.TU.Sc2ySwM_344.3509 Anthoceros agrestis HOM05D005284 ORTHO05D006609 8.5e-53 211.5 204 52.9
Thecc.06G010000 Theobroma cacao HOM05D005284 ORTHO05D006609 1.4e-50 204.1 195 54.4
Hma1.2p1_0721F.1_g208670 Hydrangea macrophylla HOM05D005284 ORTHO05D006609 1.9e-36 157.1 112 64.3
Hma1.2p1_0721F.1_g208680 Hydrangea macrophylla HOM05D005284 ORTHO05D006609 1.9e-36 157.1 112 64.3
CARHR114890 Cardamine hirsuta HOM05D005284 ORTHO05D006609 1.4e-34 151.0 98 70.4
vmacro21870 Vaccinium macrocarpon HOM05D005284 ORTHO05D006609 1.4e-31 141.0 87 75.9
Aa31LG2G17800 Aethionema arabicum HOM05D005284 ORTHO05D006609 1.6e-27 127.5 125 52.8
Thecc.06G009200 Theobroma cacao HOM05D005284 ORTHO05D006609 1.2e-25 121.3 105 54.3
Haze_05942 Corylus avellana HOM05D005284 ORTHO05D006609 1.3e-24 117.9 94 58.5
Thecc.06G009400 Theobroma cacao HOM05D005284 ORTHO05D006609 2.2e-24 117.1 99 59.6
Cfa017779 Carpinus fangiana HOM05D005284 ORTHO05D006609 4.9e-24 115.9 81 64.2
Lalb_Chr13g0291531 Lupinus albus HOM05D005284 ORTHO05D006609 8.3e-24 115.2 98 55.1
PGSC0003DMG400009806 Solanum tuberosum HOM05D005284 ORTHO05D006609 1.4e-23 114.4 94 57.4
Thecc.06G009800 Theobroma cacao HOM05D005284 ORTHO05D006609 4.1e-23 112.8 90 61.1
Dinv23919 Davidia involucrata HOM05D005284 ORTHO05D006609 5.0e-21 105.9 61 73.8
Sabra16G0312400 Salix brachista HOM05D005284 ORTHO05D006609 9.5e-20 101.7 71 69.0
PGSC0003DMG400015105 Solanum tuberosum HOM05D005284 ORTHO05D006609 2.8e-19 100.1 53 73.6
CSS0000752 Camellia sinensis var. sinensis HOM05D005284 ORTHO05D006609 8.0e-19 98.6 52 80.8
Dinv09223 Davidia involucrata HOM05D005284 ORTHO05D006609 2.3e-18 97.1 92 54.3
Pp3c22_8670 Physcomitrium patens HOM05D005284 ORTHO05D006609 4.0e-18 96.3 113 41.6
BcaB07g30524 Brassica carinata HOM05D005284 ORTHO05D006609 6.4e-16 89.0 64 59.4
GSVIVG01037925001 Vitis vinifera HOM05D005284 ORTHO05D006609 1.4e-15 87.8 76 59.2
Glyma.04G136150 Glycine max HOM05D005284 ORTHO05D006609 1.3e-13 81.3 36 91.7
Nitab4.5_0000637g0040 Nicotiana tabacum HOM05D005284 ORTHO05D006609 1.5e-12 77.8 57 61.4
Nitab4.5_0001154g0100 Nicotiana tabacum HOM05D005284 ORTHO05D006609 1.6e-11 74.3 46 69.6
CSS0004293 Camellia sinensis var. sinensis HOM05D005284 ORTHO05D006609 1.4e-10 71.2 38 71.1
Migut.D00154 Erythranthe guttata HOM05D005284 ORTHO05D006609 3.4e-09 66.6 86 48.8
Prupe.4G100800 Prunus persica HOM05D005284 ORTHO05D006609 8.3e-08 62.0 43 65.1
A07p10120 Brassica napus HOM05D005284 ORTHO05D024396 2.7e-06 57.0 33 60.6
BraA07t28805Z Brassica rapa HOM05D005284 ORTHO05D024396 2.7e-06 57.0 33 60.6


User provided reference genes

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