Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G079050 Glycine max HOM05D005562 ORTHO05D213306 2.1e-55 218.8 108 100.0
Glyma.07G179700 Glycine max HOM05D005562 ORTHO05D007785 1.0e-22 110.2 68 83.8
Glyma.20G009400 Glycine max HOM05D005562 ORTHO05D007785 7.4e-21 104.0 68 79.4
VMungo1215G0206 Vigna mungo HOM05D005562 ORTHO05D007785 1.0e-17 93.6 66 77.3
Phvul.003G012000 Phaseolus vulgaris HOM05D005562 ORTHO05D007785 8.5e-17 90.5 66 75.8
Lalb_Chr17g0338301 Lupinus albus HOM05D005562 ORTHO05D007785 4.2e-16 88.2 79 65.8
TPR.G11154 Trifolium pratense HOM05D005562 ORTHO05D007785 8.0e-15 84.0 76 61.8
Ca_12473_v3 Cicer arietinum L. HOM05D005562 ORTHO05D007785 1.4e-14 83.2 78 61.5
Medtr1g012540 Medicago truncatula HOM05D005562 ORTHO05D007785 1.1e-13 80.1 68 63.2
ClCG09G017590 Citrullus lanatus HOM05D005562 ORTHO05D007785 9.7e-13 77.0 64 60.9
Sed0010996 Sechium edule HOM05D005562 ORTHO05D007785 9.7e-13 77.0 64 60.9
arahy.Tifrunner.gnm1.ann1.4TQ1KW Arachis hypogaea HOM05D005562 ORTHO05D007785 2.2e-12 75.9 63 60.3
Psat6g096120 Pisum sativum HOM05D005562 ORTHO05D007785 2.2e-12 75.9 76 56.6
MELO3C021919.2 Cucumis melo HOM05D005562 ORTHO05D007785 2.8e-12 75.5 64 60.9
TPR.G14865 Trifolium pratense HOM05D005562 ORTHO05D007785 2.8e-12 75.5 64 60.9
arahy.Tifrunner.gnm1.ann1.ZFI36T Arachis hypogaea HOM05D005562 ORTHO05D007785 4.8e-12 74.7 63 60.3
Cfa005417 Carpinus fangiana HOM05D005562 ORTHO05D007785 1.1e-11 73.6 64 54.7
Lj2g0016235 Lotus japonicus HOM05D005562 ORTHO05D007785 1.8e-11 72.8 74 58.1
Haze_01878 Corylus avellana HOM05D005562 ORTHO05D007785 2.4e-11 72.4 65 58.5
QL11p038618 Quercus lobata HOM05D005562 ORTHO05D007785 2.4e-11 72.4 63 55.6
CiPaw.05G055600 Carya illinoinensis HOM05D005562 ORTHO05D007785 3.1e-11 72.0 64 54.7
CsaV3_2G014210 Cucumis sativus L. HOM05D005562 ORTHO05D007785 3.1e-11 72.0 64 57.8
TAR381G1284 Trochodendron aralioides HOM05D005562 ORTHO05D007785 3.1e-11 72.0 73 52.1
Prupe.8G115600 Prunus persica HOM05D005562 ORTHO05D007785 7.0e-11 70.9 64 56.2
Aa31LG8G16860 Aethionema arabicum HOM05D005562 ORTHO05D007785 1.2e-10 70.1 52 63.5
TAR625G0430 Trochodendron aralioides HOM05D005562 ORTHO05D007785 2.6e-10 68.9 73 50.7
COL.COLO4_11726 Corchorus olitorius HOM05D005562 ORTHO05D007785 3.5e-10 68.6 69 50.7
RcHm_v2.0_Chr6g0259381 Rosa chinensis HOM05D005562 ORTHO05D007785 3.5e-10 68.6 57 61.4
Dinv23596 Davidia involucrata HOM05D005562 ORTHO05D001378 4.5e-10 68.2 66 54.5
FvH4_2g07021 Fragaria vesca HOM05D005562 ORTHO05D007785 5.9e-10 67.8 61 55.7
FAN24G3180 Fragaria x ananassa HOM05D005562 ORTHO05D001378 5.9e-10 67.8 61 55.7
FAN27G1497 Fragaria x ananassa HOM05D005562 ORTHO05D007785 5.9e-10 67.8 61 55.7
MD10G1088500 Malus domestica HOM05D005562 ORTHO05D007785 5.9e-10 67.8 64 54.7
MD00G1050500 Malus domestica HOM05D005562 ORTHO05D007785 1.0e-09 67.0 56 60.7
BraA09t37197Z Brassica rapa HOM05D005562 ORTHO05D007785 1.3e-09 66.6 70 48.6
Hma1.2p1_0584F.1_g183170 Hydrangea macrophylla HOM05D005562 ORTHO05D007785 1.3e-09 66.6 49 65.3
ATR0225G001 Amborella trichopoda HOM05D005562 ORTHO05D007785 1.7e-09 66.2 69 55.1
Eucgr.I01182 Eucalyptus grandis HOM05D005562 ORTHO05D007785 1.7e-09 66.2 40 75.0
Lj9A361T59 Lonicera japonica HOM05D005562 ORTHO05D007785 1.7e-09 66.2 78 50.0
EL10Ac1g01621 Beta vulgaris HOM05D005562 ORTHO05D007785 2.2e-09 65.9 50 66.0
EL10Ac3g06682 Beta vulgaris HOM05D005562 ORTHO05D007785 2.9e-09 65.5 50 64.0
BcaB07g31395 Brassica carinata HOM05D005562 ORTHO05D007785 3.8e-09 65.1 73 45.2
A09p15570 Brassica napus HOM05D005562 ORTHO05D007785 3.8e-09 65.1 58 51.7
Cpa.g.sc26.106 Carica papaya HOM05D005562 ORTHO05D007785 3.8e-09 65.1 41 68.3
BcaC04g22480 Brassica carinata HOM05D005562 ORTHO05D007785 5.0e-09 64.7 69 44.9
C09p18820 Brassica napus HOM05D005562 ORTHO05D007785 5.0e-09 64.7 69 44.9
BolC9t54784H Brassica oleracea HOM05D005562 ORTHO05D007785 5.0e-09 64.7 69 44.9
Ciclev10028560m.g Citrus clementina HOM05D005562 ORTHO05D007785 5.0e-09 64.7 79 45.6
MBI16_g19905_MAGBIO Magnolia biondii HOM05D005562 ORTHO05D007785 5.0e-09 64.7 76 50.0
PSO210G1477 Papaver somniferum HOM05D005562 ORTHO05D007785 5.0e-09 64.7 43 67.4
Ah.13g074710 Amaranthus hybridus HOM05D005562 ORTHO05D007785 8.5e-09 63.9 40 67.5
CANSAT25G3890 Cannabis sativa HOM05D005562 ORTHO05D007785 8.5e-09 63.9 64 45.3
Thecc.02G095000 Theobroma cacao HOM05D005562 ORTHO05D007785 8.5e-09 63.9 45 66.7
TWI79G1184 Tripterygium wilfordii HOM05D005562 ORTHO05D007785 8.5e-09 63.9 65 50.8
GSVIVG01031808001 Vitis vinifera HOM05D005562 ORTHO05D007785 8.5e-09 63.9 41 70.7
CSS0049808 Camellia sinensis var. sinensis HOM05D005562 ORTHO05D007785 1.1e-08 63.5 40 70.0
Gohir.A13G037500 Gossypium hirsutum HOM05D005562 ORTHO05D007785 1.1e-08 63.5 41 65.9
Gorai.013G040500 Gossypium raimondii HOM05D005562 ORTHO05D007785 1.1e-08 63.5 41 65.9
Manes.15G144000 Manihot esculenta HOM05D005562 ORTHO05D007785 1.1e-08 63.5 63 52.4
Duzib248G1341 Durio zibethinus HOM05D005562 ORTHO05D007785 1.5e-08 63.2 69 52.2
Nn1g04154 Nelumbo nucifera HOM05D005562 ORTHO05D007785 1.9e-08 62.8 72 50.0
PGR142G1983 Punica granatum HOM05D005562 ORTHO05D007785 1.9e-08 62.8 58 53.4
Rhsim05G0079900 Rhododendron simsii HOM05D005562 ORTHO05D007785 1.9e-08 62.8 40 67.5
Atru.chr5.2830 Acer truncatum HOM05D005562 ORTHO05D007785 2.5e-08 62.4 72 45.8
AUR62042921 Chenopodium quinoa HOM05D005562 ORTHO05D007785 2.5e-08 62.4 48 56.2
Potri.004G145700 Populus trichocarpa HOM05D005562 ORTHO05D007785 2.5e-08 62.4 52 55.8
THA.LOC104814570 Tarenaya hassleriana HOM05D005562 ORTHO05D007785 2.5e-08 62.4 47 57.4
Gohir.D13G035800 Gossypium hirsutum HOM05D005562 ORTHO05D007785 3.2e-08 62.0 41 63.4
Os10g0494200 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 3.2e-08 62.0 50 60.0
Carub.0003s3419 Capsella rubella HOM05D005562 ORTHO05D007785 4.2e-08 61.6 69 43.5
Thhalv10002012m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 4.2e-08 61.6 69 43.5
Os03g0617900 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 4.2e-08 61.6 52 57.7
PSO170G1474 Papaver somniferum HOM05D005562 ORTHO05D007785 4.2e-08 61.6 57 54.4
HPP92_018726 Vanilla planifolia HOM05D005562 ORTHO05D007785 4.2e-08 61.6 54 55.6
DCAR_022068 Daucus carota HOM05D005562 ORTHO05D001378 5.5e-08 61.2 76 46.1
Oeu057671.1 Olea europaea HOM05D005562 ORTHO05D007785 5.5e-08 61.2 57 56.1
AUR62035865 Chenopodium quinoa HOM05D005562 ORTHO05D007785 7.2e-08 60.8 37 67.6
Thhalv10023506m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 7.2e-08 60.8 42 57.1
Peaxi162Scf00016g01531 Petunia axillaris HOM05D005562 ORTHO05D007785 7.2e-08 60.8 39 66.7
Sp3g33250 Schrenkiella parvula HOM05D005562 ORTHO05D007785 7.2e-08 60.8 55 50.9
Aqoxy5G01421 Aquilegia oxysepala HOM05D005562 ORTHO05D007785 9.4e-08 60.5 56 58.9
BcaC04g19978 Brassica carinata HOM05D005562 ORTHO05D007785 9.4e-08 60.5 38 60.5
C09p49210 Brassica napus HOM05D005562 ORTHO05D007785 9.4e-08 60.5 38 60.5
AT2G19940 Arabidopsis thaliana HOM05D005562 ORTHO05D007785 1.6e-07 59.7 62 45.2
Cc07_g19550 Coffea canephora HOM05D005562 ORTHO05D007785 1.6e-07 59.7 42 61.9
Nitab4.5_0003726g0070 Nicotiana tabacum HOM05D005562 ORTHO05D007785 1.6e-07 59.7 39 64.1
CBR_g5649 Chara braunii HOM05D005562 ORTHO05D001468 2.1e-07 59.3 79 44.3
Zm00001eb051410 Zea mays HOM05D005562 ORTHO05D007785 2.1e-07 59.3 41 61.0
CARHR110380 Cardamine hirsuta HOM05D005562 ORTHO05D007785 2.7e-07 58.9 54 48.1
Nitab4.5_0001401g0050 Nicotiana tabacum HOM05D005562 ORTHO05D007785 2.7e-07 58.9 76 38.2
SalBow4G0329 Salvia bowleyana HOM05D005562 ORTHO05D007785 2.7e-07 58.9 45 57.8
Solyc01g108660.4 Solanum lycopersicum HOM05D005562 ORTHO05D007785 2.7e-07 58.9 39 66.7
CAN.G322.41 Capsicum annuum HOM05D005562 ORTHO05D007785 3.6e-07 58.5 76 39.5
Migut.B00304 Erythranthe guttata HOM05D005562 ORTHO05D007785 3.6e-07 58.5 70 47.1
Sopen01g050880 Solanum pennellii HOM05D005562 ORTHO05D007785 3.6e-07 58.5 39 64.1
PGSC0003DMG401025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 3.6e-07 58.5 38 65.8
PGSC0003DMG402025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 3.6e-07 58.5 38 65.8
SalBow3G1434 Salvia bowleyana HOM05D005562 ORTHO05D007785 4.7e-07 58.2 45 55.6
BolC9t57765H Brassica oleracea HOM05D005562 ORTHO05D007785 6.1e-07 57.8 38 57.9
Pp3c8_22120 Physcomitrium patens HOM05D005562 ORTHO05D007785 6.1e-07 57.8 61 47.5
MSTRG.5375 Avicennia marina HOM05D005562 ORTHO05D007785 8.0e-07 57.4 42 57.1
HanXRQChr13g0402421 Helianthus annuus HOM05D005562 ORTHO05D007785 8.0e-07 57.4 47 48.9
HanXRQChr16g0528561 Helianthus annuus HOM05D005562 ORTHO05D007785 8.0e-07 57.4 47 48.9
Mapoly0036s0058 Marchantia polymorpha HOM05D005562 ORTHO05D007785 8.0e-07 57.4 37 64.9
Pp3c24_19140 Physcomitrium patens HOM05D005562 ORTHO05D007785 8.0e-07 57.4 37 67.6
Hund01581 Selenicereus undatus HOM05D005562 ORTHO05D007785 1.0e-06 57.0 54 55.6
unitig_26.g10242 Utricularia gibba HOM05D005562 ORTHO05D007785 1.0e-06 57.0 64 48.4
Lsat_1_v5_gn_9_108961 Lactuca sativa HOM05D005562 ORTHO05D007785 1.4e-06 56.6 64 45.3
SGA_v2.0_scaffold32G13119 Striga asiatica HOM05D005562 ORTHO05D007785 1.4e-06 56.6 36 69.4
SMO116G0475 Selaginella moellendorffii HOM05D005562 ORTHO05D007785 1.8e-06 56.2 46 56.5


User provided reference genes

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