Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G073500 Glycine max HOM05D005104 ORTHO05D006614 1.9e-120 436.0 247 100.0
Glyma.05G118400 Glycine max HOM05D005104 ORTHO05D006614 1.2e-103 380.2 252 89.7
Phvul.002G208000 Phaseolus vulgaris HOM05D005104 ORTHO05D006614 3.1e-99 365.5 251 79.7
VMungo0251G0802 Vigna mungo HOM05D005104 ORTHO05D006614 5.5e-96 354.8 251 77.7
arahy.Tifrunner.gnm1.ann1.V9NXIE Arachis hypogaea HOM05D005104 ORTHO05D006614 2.8e-92 342.4 249 79.9
arahy.Tifrunner.gnm1.ann1.PH7E5N Arachis hypogaea HOM05D005104 ORTHO05D006614 1.6e-90 336.7 249 79.5
Psat7g098720 Pisum sativum HOM05D005104 ORTHO05D006614 1.9e-88 329.7 249 73.1
Ca_18345_v3 Cicer arietinum L. HOM05D005104 ORTHO05D006614 3.4e-85 318.9 272 67.6
Medtr4g094252 Medicago truncatula HOM05D005104 ORTHO05D006614 4.4e-85 318.5 249 71.5
Lj4g0020611 Lotus japonicus HOM05D005104 ORTHO05D006614 2.2e-84 316.2 250 69.6
TPR.G10460 Trifolium pratense HOM05D005104 ORTHO05D006614 4.9e-84 315.1 208 80.3
Lalb_Chr10g0097741 Lupinus albus HOM05D005104 ORTHO05D006614 8.6e-81 304.3 251 73.7
Haze_10684 Corylus avellana HOM05D005104 ORTHO05D006614 5.7e-77 291.6 249 73.9
CiPaw.05G036500 Carya illinoinensis HOM05D005104 ORTHO05D006614 3.7e-76 288.9 249 71.5
Manes.14G166400 Manihot esculenta HOM05D005104 ORTHO05D006614 4.1e-75 285.4 250 65.6
Cfa005608 Carpinus fangiana HOM05D005104 ORTHO05D006614 1.2e-74 283.9 252 73.4
CANSAT11G2657 Cannabis sativa HOM05D005104 ORTHO05D006614 5.9e-74 281.6 263 66.5
Thecc.02G140100 Theobroma cacao HOM05D005104 ORTHO05D006614 1.0e-73 280.8 252 72.2
Dinv24198 Davidia involucrata HOM05D005104 ORTHO05D006614 1.7e-73 280.0 259 64.1
Eucgr.I02668 Eucalyptus grandis HOM05D005104 ORTHO05D006614 2.3e-73 279.6 250 64.4
MELO3C018651.2 Cucumis melo HOM05D005104 ORTHO05D006614 6.6e-73 278.1 249 65.5
Sed0008592 Sechium edule HOM05D005104 ORTHO05D006614 1.1e-72 277.3 249 70.3
PGR142G2776 Punica granatum HOM05D005104 ORTHO05D006614 3.6e-71 272.3 257 61.1
Prupe.8G062400 Prunus persica HOM05D005104 ORTHO05D006614 6.1e-71 271.6 254 67.3
CsaV3_7G006430 Cucumis sativus L. HOM05D005104 ORTHO05D006614 8.0e-71 271.2 253 64.0
Duzib248G0158 Durio zibethinus HOM05D005104 ORTHO05D006614 1.4e-70 270.4 250 62.0
Gohir.A04G113100 Gossypium hirsutum HOM05D005104 ORTHO05D006614 1.8e-70 270.0 253 64.0
ClCG09G015340 Citrullus lanatus HOM05D005104 ORTHO05D006614 4.0e-70 268.9 271 59.8
Atru.chr6.1089 Acer truncatum HOM05D005104 ORTHO05D006614 5.2e-70 268.5 250 71.6
Atru.chr6.1109 Acer truncatum HOM05D005104 ORTHO05D006614 5.2e-70 268.5 250 71.2
COL.COLO4_20953 Corchorus olitorius HOM05D005104 ORTHO05D006614 2.0e-69 266.5 252 65.1
Gohir.D04G154400 Gossypium hirsutum HOM05D005104 ORTHO05D006614 2.0e-69 266.5 250 64.8
Gorai.012G141700 Gossypium raimondii HOM05D005104 ORTHO05D006614 2.0e-69 266.5 250 64.8
Gohir.A04G112960 Gossypium hirsutum HOM05D005104 ORTHO05D006614 3.7e-68 262.3 204 70.1
MD10G1051500 Malus domestica HOM05D005104 ORTHO05D006614 8.3e-68 261.2 201 72.1
QL11p020542 Quercus lobata HOM05D005104 ORTHO05D006614 5.4e-67 258.5 272 64.3
Ciclev10029197m.g Citrus clementina HOM05D005104 ORTHO05D006614 6.0e-66 255.0 249 68.7
TAR628G1132 Trochodendron aralioides HOM05D005104 ORTHO05D006614 3.0e-65 252.7 256 58.2
MSTRG.27791 Avicennia marina HOM05D005104 ORTHO05D006614 5.0e-65 251.9 251 57.8
CSS0037720 Camellia sinensis var. sinensis HOM05D005104 ORTHO05D006614 1.6e-63 246.9 258 64.7
FvH4_2g12710 Fragaria vesca HOM05D005104 ORTHO05D006614 2.1e-63 246.5 253 65.2
Migut.N01063 Erythranthe guttata HOM05D005104 ORTHO05D006614 2.8e-63 246.1 249 58.2
RcHm_v2.0_Chr6g0273461 Rosa chinensis HOM05D005104 ORTHO05D006614 2.8e-63 246.1 252 65.1
TWI59G0245 Tripterygium wilfordii HOM05D005104 ORTHO05D006614 3.6e-63 245.7 251 57.8
GSVIVG01003083001 Vitis vinifera HOM05D005104 ORTHO05D006614 3.6e-63 245.7 256 56.2
Oeu007957.1 Olea europaea HOM05D005104 ORTHO05D006614 6.2e-63 245.0 251 57.4
Potri.003G023601 Populus trichocarpa HOM05D005104 ORTHO05D006614 1.1e-62 244.2 263 65.0
Hma1.2p1_0522F.1_g171600 Hydrangea macrophylla HOM05D005104 ORTHO05D006614 2.3e-62 243.0 201 67.7
SalBow6G6298 Salvia bowleyana HOM05D005104 ORTHO05D006614 2.3e-62 243.0 253 56.9
SalBow6G6009 Salvia bowleyana HOM05D005104 ORTHO05D006614 4.0e-62 242.3 252 56.7
FAN27G3119 Fragaria x ananassa HOM05D005104 ORTHO05D006614 8.9e-62 241.1 252 62.7
Actinidia28058 Actinidia chinensis HOM05D005104 ORTHO05D006614 7.5e-61 238.0 262 56.1
FAN20G1981 Fragaria x ananassa HOM05D005104 ORTHO05D006614 1.3e-60 237.3 253 64.0
Nn1g05321 Nelumbo nucifera HOM05D005104 ORTHO05D006614 1.3e-60 237.3 256 60.2
vmacro19925 Vaccinium macrocarpon HOM05D005104 ORTHO05D006614 1.7e-60 236.9 301 55.1
HanXRQChr10g0295831 Helianthus annuus HOM05D005104 ORTHO05D006614 2.9e-60 236.1 253 58.1
SGA_v2.0_scaffold45G17311 Striga asiatica HOM05D005104 ORTHO05D006614 8.3e-60 234.6 253 59.3
Aqoxy6G00597 Aquilegia oxysepala HOM05D005104 ORTHO05D006614 1.4e-59 233.8 262 63.4
Cpa.g.sc42.74 Carica papaya HOM05D005104 ORTHO05D006614 1.4e-59 233.8 261 56.7
Lsat_1_v5_gn_5_107140 Lactuca sativa HOM05D005104 ORTHO05D006614 1.4e-59 233.8 252 64.7
PGSC0003DMG400017693 Solanum tuberosum HOM05D005104 ORTHO05D006614 5.4e-59 231.9 196 65.8
Sopen10g017460 Solanum pennellii HOM05D005104 ORTHO05D006614 1.6e-58 230.3 196 65.3
DCAR_001791 Daucus carota HOM05D005104 ORTHO05D006614 3.5e-58 229.2 257 55.3
Solyc10g047220.2 Solanum lycopersicum HOM05D005104 ORTHO05D006614 3.5e-58 229.2 196 65.3
PSO781G0266 Papaver somniferum HOM05D005104 ORTHO05D006614 1.0e-57 227.6 258 54.3
BcaB02g09781 Brassica carinata HOM05D005104 ORTHO05D006614 1.7e-57 226.9 250 58.0
Rhsim05G0108500 Rhododendron simsii HOM05D005104 ORTHO05D006614 1.7e-57 226.9 182 67.6
Sp2g27220 Schrenkiella parvula HOM05D005104 ORTHO05D006614 1.7e-57 226.9 250 55.2
AT5G64160 Arabidopsis thaliana HOM05D005104 ORTHO05D006614 3.9e-57 225.7 251 55.0
Thhalv10004872m.g Eutrema salsugineum HOM05D005104 ORTHO05D006614 3.9e-57 225.7 250 54.8
A06p30880 Brassica napus HOM05D005104 ORTHO05D006614 5.1e-57 225.3 250 60.0
Sabra01G0157800 Salix brachista HOM05D005104 ORTHO05D006614 5.1e-57 225.3 281 56.9
ECA234G0341 Erigeron canadensis HOM05D005104 ORTHO05D006614 1.1e-56 224.2 201 63.2
AL8G41430 Arabidopsis lyrata HOM05D005104 ORTHO05D006614 1.5e-56 223.8 257 54.9
BcaB07g29727 Brassica carinata HOM05D005104 ORTHO05D006614 5.6e-56 221.9 249 53.4
Carub.0008s2495 Capsella rubella HOM05D005104 ORTHO05D006614 7.3e-56 221.5 251 54.2
Peaxi162Scf00003g03543 Petunia axillaris HOM05D005104 ORTHO05D006614 7.3e-56 221.5 255 62.7
BcaC01g02673 Brassica carinata HOM05D005104 ORTHO05D006614 1.2e-55 220.7 250 58.4
BolC3t18470H Brassica oleracea HOM05D005104 ORTHO05D006614 1.2e-55 220.7 250 58.8
C03p62090 Brassica napus HOM05D005104 ORTHO05D006614 1.6e-55 220.3 250 58.8
PSO541G4381 Papaver somniferum HOM05D005104 ORTHO05D006614 6.2e-55 218.4 258 53.5
CDE10G0587 Ceratophyllum demersum HOM05D005104 ORTHO05D006614 8.1e-55 218.0 255 51.8
HPP92_006000 Vanilla planifolia HOM05D005104 ORTHO05D006614 1.1e-54 217.6 257 52.9
BcaC02g09479 Brassica carinata HOM05D002012 ORTHO05D001992 1.4e-54 217.2 185 64.9
CARHR278070 Cardamine hirsuta HOM05D005104 ORTHO05D006614 2.0e-53 213.4 250 53.6
ATR0564G397 Amborella trichopoda HOM05D005104 ORTHO05D006614 2.6e-53 213.0 257 54.1
C09p58340 Brassica napus HOM05D005104 ORTHO05D006614 9.9e-53 211.1 188 62.8
BolC9t58698H Brassica oleracea HOM05D005104 ORTHO05D006614 9.9e-53 211.1 188 62.8
C09p58390 Brassica napus HOM05D005104 ORTHO05D006614 2.2e-52 209.9 185 61.6
Cc02_g21630 Coffea canephora HOM05D005104 ORTHO05D006614 4.9e-52 208.8 249 61.8
C06p26800 Brassica napus HOM05D005104 ORTHO05D006614 1.1e-51 207.6 203 59.1
BolC6t37855H Brassica oleracea HOM05D005104 ORTHO05D006614 1.4e-51 207.2 203 59.1
BcaC08g45071 Brassica carinata HOM05D005104 ORTHO05D006614 5.4e-51 205.3 203 58.6
Oeu026158.1 Olea europaea HOM05D005104 ORTHO05D006614 4.6e-50 202.2 251 51.4
C02p46090 Brassica napus HOM05D005104 ORTHO05D006614 3.9e-49 199.1 186 59.7
Aa31LG1G17770 Aethionema arabicum HOM05D005104 ORTHO05D006614 1.1e-48 197.6 266 49.6
SEGI_35517 Sequoiadendron giganteum HOM05D005104 ORTHO05D006614 4.3e-48 195.7 265 48.3
FAN24G3378 Fragaria x ananassa HOM05D005104 ORTHO05D006614 5.6e-48 195.3 129 77.5
Os02g0753200 Oryza sativa ssp. japonica HOM05D005104 ORTHO05D006614 1.2e-47 194.1 183 61.7
AUR62010117 Chenopodium quinoa HOM05D005104 ORTHO05D006614 1.6e-47 193.7 253 59.3
BraA03t13815Z Brassica rapa HOM05D005104 ORTHO05D006614 2.8e-47 193.0 182 57.7
AUR62013112 Chenopodium quinoa HOM05D005104 ORTHO05D006614 2.8e-47 193.0 253 58.9
Lj5A240T40 Lonicera japonica HOM05D005104 ORTHO05D006614 2.4e-46 189.9 134 75.4
Hma1.2p1_0522F.1_g171590 Hydrangea macrophylla HOM05D005104 ORTHO05D006614 8.9e-46 188.0 163 63.2
MBI02_g08741_MAGBIO Magnolia biondii HOM05D005104 ORTHO05D006614 1.5e-45 187.2 135 71.9
Hund06391 Selenicereus undatus HOM05D005104 ORTHO05D006614 4.4e-45 185.7 251 49.4
GSVIVG01013334001 Vitis vinifera HOM05D005104 ORTHO05D006614 2.2e-44 183.3 139 69.8
GSVIVG01003087001 Vitis vinifera HOM05D005104 ORTHO05D006614 6.4e-44 181.8 139 69.1
Zm00001eb194200 Zea mays HOM05D005104 ORTHO05D006614 2.1e-42 176.8 257 52.9
Zm00001eb255190 Zea mays HOM05D005104 ORTHO05D006614 8.7e-41 171.4 258 46.9
Ah.01g009520 Amaranthus hybridus HOM05D005104 ORTHO05D006614 2.1e-39 166.8 249 47.0
GSVIVG01003093001 Vitis vinifera HOM05D005104 ORTHO05D006614 7.6e-37 158.3 121 68.6
Mapoly0096s0033 Marchantia polymorpha HOM05D005104 ORTHO05D006614 7.1e-35 151.8 208 46.6
Pp3c18_21190 Physcomitrium patens HOM05D005104 ORTHO05D006614 7.1e-35 151.8 255 43.9
Nitab4.5_0000078g0030 Nicotiana tabacum HOM05D005104 ORTHO05D006614 2.3e-33 146.7 268 50.7
SMO117G0229 Selaginella moellendorffii HOM05D005104 ORTHO05D006614 3.0e-33 146.4 199 49.2
Sc08g0003350 Simmondsia chinensis HOM05D005104 ORTHO05D006614 1.9e-32 143.7 129 64.3
unitig_22.g6836 Utricularia gibba HOM05D001058 ORTHO05D000911 4.8e-31 139.0 181 49.7
AagrBONN_evm.TU.Sc2ySwM_117.984 Anthoceros agrestis HOM05D005104 ORTHO05D006614 1.1e-30 137.9 254 41.3
BolC4t25904H Brassica oleracea HOM05D005104 ORTHO05D006614 2.8e-23 113.2 74 74.3
EL10Ac9g21466 Beta vulgaris HOM05D005104 ORTHO05D006614 3.7e-23 112.8 75 80.0
THA.LOC104818435 Tarenaya hassleriana HOM05D005104 ORTHO05D006614 6.2e-23 112.1 181 44.8
CAN.G1.36 Capsicum annuum HOM05D005104 ORTHO05D006614 1.4e-22 110.9 180 51.1
Nitab4.5_0005015g0050 Nicotiana tabacum HOM05D005104 ORTHO05D006614 2.4e-22 110.2 165 58.8
CDE10G1356 Ceratophyllum demersum HOM05D005104 ORTHO05D006614 3.2e-19 99.8 182 39.0
arahy.Tifrunner.gnm1.ann1.H2YG1F Arachis hypogaea HOM05D005104 ORTHO05D006614 9.0e-14 81.6 58 74.1
A02p26040 Brassica napus HOM05D005104 ORTHO05D006614 9.0e-14 81.6 99 52.5
Duzib132G1169 Durio zibethinus HOM05D005104 ORTHO05D006614 2.0e-13 80.5 139 41.7
CBR_g47116 Chara braunii HOM05D005104 ORTHO05D006614 2.9e-12 76.6 224 33.5
Potri.001G206032 Populus trichocarpa HOM05D005104 ORTHO05D006614 2.9e-12 76.6 74 58.1
Hma1.2p1_0516F.1_g170490 Hydrangea macrophylla HOM05D005104 ORTHO05D006614 9.3e-11 71.6 95 47.4
EL10Ac9g21465 Beta vulgaris HOM05D005104 ORTHO05D006614 1.0e-09 68.2 236 38.1
BolC6t38485H Brassica oleracea HOM05D005104 ORTHO05D006614 5.7e-08 62.4 91 45.1
C07p45690 Brassica napus HOM05D005104 ORTHO05D021970 2.4e-06 57.0 122 38.5
FAN15G2545 Fragaria x ananassa HOM05D005104 ORTHO05D006614 3.1e-06 56.6 119 54.6
C03p52730 Brassica napus HOM05D005104 ORTHO05D021970 9.0e-06 55.1 125 36.8


User provided reference genes

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