Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G070200 Glycine max HOM05D007310 ORTHO05D002375 7.0e-109 397.5 232 100.0
Glyma.13G042400 Glycine max HOM05D007310 ORTHO05D002375 9.8e-79 297.4 233 78.5
Phvul.002G211100 Phaseolus vulgaris HOM05D007310 ORTHO05D002375 5.6e-66 255.0 234 72.6
VMungo0251G1327 Vigna mungo HOM05D007310 ORTHO05D002375 1.1e-58 230.7 264 58.7
TPR.G2868 Trifolium pratense HOM05D007310 ORTHO05D002375 4.3e-50 202.2 230 58.7
Lalb_Chr09g0326871 Lupinus albus HOM05D007310 ORTHO05D002375 1.6e-49 200.3 233 51.1
Lj4g0014623 Lotus japonicus HOM05D007310 ORTHO05D002375 6.9e-48 194.9 232 59.1
Ca_18369_v3 Cicer arietinum L. HOM05D007310 ORTHO05D002375 3.8e-46 189.1 232 57.3
Medtr4g093820 Medicago truncatula HOM05D007310 ORTHO05D002375 4.2e-45 185.7 231 54.5
arahy.Tifrunner.gnm1.ann1.U7VQVC Arachis hypogaea HOM05D007310 ORTHO05D002375 8.1e-41 171.4 233 53.6
arahy.Tifrunner.gnm1.ann1.KVX74B Arachis hypogaea HOM05D007310 ORTHO05D002375 1.1e-40 171.0 233 53.6
Psat7g100440 Pisum sativum HOM05D007310 ORTHO05D002375 5.8e-39 165.2 231 50.2
Potri.001G310100 Populus trichocarpa HOM05D007310 ORTHO05D002375 1.7e-22 110.5 224 37.5
Ciclev10030152m.g Citrus clementina HOM05D007310 ORTHO05D002375 2.9e-22 109.8 205 43.4
Prupe.8G066300 Prunus persica HOM05D007310 ORTHO05D002375 1.1e-21 107.8 228 41.2
CiPaw.05G032100 Carya illinoinensis HOM05D007310 ORTHO05D002375 1.4e-21 107.5 234 39.7
QL11p023211 Quercus lobata HOM05D007310 ORTHO05D002375 7.2e-21 105.1 231 39.0
Thecc.02G133200 Theobroma cacao HOM05D007310 ORTHO05D002375 2.3e-19 100.1 208 42.3
Dinv24166 Davidia involucrata HOM05D007310 ORTHO05D002375 1.9e-18 97.1 229 38.9
RcHm_v2.0_Chr7g0236611 Rosa chinensis HOM05D007310 ORTHO05D002375 5.7e-18 95.5 238 37.4
Cfa005685 Carpinus fangiana HOM05D007310 ORTHO05D002375 1.7e-17 94.0 181 43.1
Haze_10565 Corylus avellana HOM05D007310 ORTHO05D002375 1.7e-17 94.0 235 37.4
Manes.07G038100 Manihot esculenta HOM05D007310 ORTHO05D002375 1.1e-16 91.3 169 43.8
Sabra17G0036600 Salix brachista HOM05D007310 ORTHO05D002375 4.1e-16 89.4 89 58.4
FvH4_2g13500 Fragaria vesca HOM05D007310 ORTHO05D002375 5.3e-16 89.0 178 33.7
FAN24G3359 Fragaria x ananassa HOM05D007310 ORTHO05D004145 5.3e-16 89.0 178 33.7
MD05G1054900 Malus domestica HOM05D007310 ORTHO05D002375 6.9e-16 88.6 227 37.0
CiPaw.06G156100 Carya illinoinensis HOM05D007310 ORTHO05D002375 9.1e-16 88.2 149 50.3
Manes.07G035800 Manihot esculenta HOM05D007310 ORTHO05D002375 1.2e-15 87.8 170 41.8
Rhsim05G0103200 Rhododendron simsii HOM05D007310 ORTHO05D002375 1.2e-15 87.8 162 46.3
Duzib248G0762 Durio zibethinus HOM05D007310 ORTHO05D002375 2.0e-15 87.0 185 43.8
FAN15G0442 Fragaria x ananassa HOM05D007310 ORTHO05D002375 3.4e-15 86.3 232 37.1
Carub.0003s2834 Capsella rubella HOM05D007310 ORTHO05D002375 7.7e-15 85.1 148 37.2
Nn5g29980 Nelumbo nucifera HOM05D007310 ORTHO05D002375 1.0e-14 84.7 214 38.3
Cpa.g.sc42.21 Carica papaya HOM05D007310 ORTHO05D002375 2.9e-14 83.2 174 43.7
PGR142G1548 Punica granatum HOM05D007310 ORTHO05D002375 2.9e-14 83.2 161 44.1
Sabra17G0042000 Salix brachista HOM05D007310 ORTHO05D002375 5.0e-14 82.4 89 52.8
Peaxi162Scf00299g00914 Petunia axillaris HOM05D007310 ORTHO05D002375 6.5e-14 82.0 233 33.5
FAN27G1440 Fragaria x ananassa HOM05D007310 ORTHO05D002375 8.5e-14 81.6 183 35.0
Nitab4.5_0006625g0010 Nicotiana tabacum HOM05D007310 ORTHO05D002375 1.4e-13 80.9 200 37.0
AT2G14095 Arabidopsis thaliana HOM05D007310 ORTHO05D002375 1.9e-13 80.5 149 35.6
CSS0047922 Camellia sinensis var. sinensis HOM05D007310 ORTHO05D002375 1.9e-13 80.5 174 42.5
Hma1.2p1_0784F.1_g217300 Hydrangea macrophylla HOM05D007310 ORTHO05D002375 1.9e-13 80.5 144 47.9
THA.LOC104804411 Tarenaya hassleriana HOM05D007310 ORTHO05D002375 1.9e-13 80.5 233 40.3
CARHR104210 Cardamine hirsuta HOM05D007310 ORTHO05D002375 2.5e-13 80.1 146 35.6
ECA234G2182 Erigeron canadensis HOM05D007310 ORTHO05D002375 9.4e-13 78.2 180 43.3
TWI14G0938 Tripterygium wilfordii HOM05D007310 ORTHO05D002375 9.4e-13 78.2 244 34.8
Oeu022081.1 Olea europaea HOM05D007310 ORTHO05D002375 2.1e-12 77.0 179 37.4
GSVIVG01015685001 Vitis vinifera HOM05D007310 ORTHO05D002375 2.1e-12 77.0 192 33.9
BcaB08g34551 Brassica carinata HOM05D007310 ORTHO05D002375 3.6e-12 76.3 146 41.1
AUR62011722 Chenopodium quinoa HOM05D007310 ORTHO05D002375 3.6e-12 76.3 225 35.1
Migut.B00577 Erythranthe guttata HOM05D007310 ORTHO05D002375 6.1e-12 75.5 162 32.7
Cc02_g21140 Coffea canephora HOM05D007310 ORTHO05D002375 7.9e-12 75.1 217 36.4
COL.COLO4_32323 Corchorus olitorius HOM05D007310 ORTHO05D002375 7.9e-12 75.1 134 49.3
PGSC0003DMG400012536 Solanum tuberosum HOM05D007310 ORTHO05D002375 7.9e-12 75.1 237 29.1
CANSAT11G0123 Cannabis sativa HOM05D007310 ORTHO05D002375 2.3e-11 73.6 209 36.4
Sp3g27450 Schrenkiella parvula HOM05D007310 ORTHO05D002375 2.3e-11 73.6 204 38.7
Eucgr.I02631 Eucalyptus grandis HOM05D007310 ORTHO05D002375 3.0e-11 73.2 174 37.9
AL3G45790 Arabidopsis lyrata HOM05D007310 ORTHO05D002375 3.9e-11 72.8 149 36.2
CSS0048944 Camellia sinensis var. sinensis HOM05D007310 ORTHO05D002375 3.9e-11 72.8 62 59.7
AUR62012905 Chenopodium quinoa HOM05D007310 ORTHO05D002375 3.9e-11 72.8 138 44.9
EL10Ac9g21224 Beta vulgaris HOM05D007310 ORTHO05D002375 5.1e-11 72.4 139 42.4
CAN.G523.36 Capsicum annuum HOM05D007310 ORTHO05D002375 6.7e-11 72.0 185 36.8
TAR376G0136 Trochodendron aralioides HOM05D007310 ORTHO05D002375 6.7e-11 72.0 189 41.3
CSS0024408 Camellia sinensis var. sinensis HOM05D007310 ORTHO05D002375 2.0e-10 70.5 72 56.9
Potri.017G050000 Populus trichocarpa HOM05D007310 ORTHO05D002375 2.0e-10 70.5 211 35.5
Nitab4.5_0000863g0020 Nicotiana tabacum HOM05D007310 ORTHO05D002375 2.6e-10 70.1 218 31.7
SGA_v2.0_scaffold14G07142 Striga asiatica HOM05D007310 ORTHO05D002375 2.6e-10 70.1 137 33.6
Atru.chr6.1218 Acer truncatum HOM05D007310 ORTHO05D002375 1.3e-09 67.8 87 57.5
PSO761G0222 Papaver somniferum HOM05D007310 ORTHO05D002375 1.7e-09 67.4 224 27.7
Sabra16G0196000 Salix brachista HOM05D007310 ORTHO05D002375 1.7e-09 67.4 201 33.3
SalBow8G1210 Salvia bowleyana HOM05D007310 ORTHO05D002375 1.7e-09 67.4 149 30.2
HanXRQChr10g0290991 Helianthus annuus HOM05D007310 ORTHO05D002375 2.2e-09 67.0 137 44.5
DCAR_021882 Daucus carota HOM05D007310 ORTHO05D002375 6.3e-09 65.5 64 53.1
Sc08g0003780 Simmondsia chinensis HOM05D007310 ORTHO05D002375 8.2e-09 65.1 229 33.2
Sopen01g048060 Solanum pennellii HOM05D007310 ORTHO05D002375 1.4e-08 64.3 179 27.9
Actinidia28038 Actinidia chinensis HOM05D007310 ORTHO05D002375 2.4e-08 63.5 164 38.4
MELO3C018616.2 Cucumis melo HOM05D007310 ORTHO05D002375 3.1e-08 63.2 162 41.4
MBI06_g03314_MAGBIO Magnolia biondii HOM05D007310 ORTHO05D002375 4.1e-08 62.8 138 44.9
Solyc01g105600.3 Solanum lycopersicum HOM05D007310 ORTHO05D002375 9.1e-08 61.6 102 38.2
ClCG09G015950 Citrullus lanatus HOM05D007310 ORTHO05D002375 3.4e-07 59.7 132 45.5
Gohir.D02G199400 Gossypium hirsutum HOM05D007310 ORTHO05D002375 7.7e-07 58.5 129 45.0
ATR0684G111 Amborella trichopoda HOM05D007310 ORTHO05D002375 1.3e-06 57.8 97 50.5
Nn1g05467 Nelumbo nucifera HOM05D004728 ORTHO05D002375 1.3e-06 57.8 57 52.6
C03p56020 Brassica napus HOM05D007310 ORTHO05D002375 1.7e-06 57.4 50 54.0
BolC3t17888H Brassica oleracea HOM05D007310 ORTHO05D002375 1.7e-06 57.4 50 54.0
CsaV3_7G006790 Cucumis sativus L. HOM05D007310 ORTHO05D002375 1.7e-06 57.4 124 47.6
Sed0021578 Sechium edule HOM05D007310 ORTHO05D002375 2.2e-06 57.0 126 45.2
BcaC01g03103 Brassica carinata HOM05D007310 ORTHO05D002375 2.9e-06 56.6 146 34.2
HPP92_019302 Vanilla planifolia HOM05D007310 ORTHO05D002375 2.9e-06 56.6 133 39.1
Duzib147G1195 Durio zibethinus HOM05D004728 ORTHO05D002375 5.0e-06 55.8 156 37.2


User provided reference genes

Program Settings