Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G063100 Glycine max HOM05D004381 ORTHO05D005200 1.8e-37 158.7 78 100.0
Glyma.11G132500 Glycine max HOM05D004381 ORTHO05D005200 1.1e-21 106.3 58 86.2
Phvul.011G058500 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 1.1e-21 106.3 58 86.2
VMungo1127G1882 Vigna mungo HOM05D004381 ORTHO05D005200 1.8e-21 105.5 61 80.3
Psat7g213080 Pisum sativum HOM05D004381 ORTHO05D005200 9.1e-21 103.2 58 82.8
arahy.Tifrunner.gnm1.ann1.BUZ3KN Arachis hypogaea HOM05D004381 ORTHO05D005200 3.5e-20 101.3 66 72.7
arahy.Tifrunner.gnm1.ann1.N626J4 Arachis hypogaea HOM05D004381 ORTHO05D005200 3.5e-20 101.3 66 72.7
Ca_20572_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 3.5e-20 101.3 58 81.0
Ca_30507_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 3.5e-20 101.3 58 81.0
Medtr4g065640 Medicago truncatula HOM05D004381 ORTHO05D005200 3.5e-20 101.3 66 71.2
TPR.G35036 Trifolium pratense HOM05D004381 ORTHO05D005200 3.5e-20 101.3 58 81.0
Lj3g0009499 Lotus japonicus HOM05D004381 ORTHO05D005200 1.3e-19 99.4 66 71.2
Rhsim13G0223600 Rhododendron simsii HOM05D004381 ORTHO05D005200 3.8e-19 97.8 57 78.9
Lalb_Chr19g0138141 Lupinus albus HOM05D004381 ORTHO05D005200 6.6e-19 97.1 58 77.6
TPR.G6819 Trifolium pratense HOM05D004381 ORTHO05D005200 8.6e-19 96.7 65 76.9
Lj3g0004330 Lotus japonicus HOM05D004381 ORTHO05D005200 1.1e-18 96.3 57 80.7
Hund22064 Selenicereus undatus HOM05D004381 ORTHO05D005200 1.1e-18 96.3 57 80.7
SGA_v2.0_scaffold247G44855 Striga asiatica HOM05D004381 ORTHO05D005200 1.1e-18 96.3 57 80.7
EL10Ac4g10297 Beta vulgaris HOM05D004381 ORTHO05D005200 1.5e-18 95.9 62 74.2
AUR62019272 Chenopodium quinoa HOM05D004381 ORTHO05D005200 1.5e-18 95.9 58 79.3
Ca_01288_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 1.5e-18 95.9 57 80.7
Haze_23102 Corylus avellana HOM05D004381 ORTHO05D005200 1.5e-18 95.9 57 80.7
Os02g0196000 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 1.5e-18 95.9 57 78.9
Psat5g287120 Pisum sativum HOM05D004381 ORTHO05D005200 1.5e-18 95.9 57 80.7
CSS0020783 Camellia sinensis var. sinensis HOM05D004381 ORTHO05D005200 1.9e-18 95.5 57 78.9
Cc06_g22560 Coffea canephora HOM05D004381 ORTHO05D005200 1.9e-18 95.5 57 78.9
Atru.chr3.2598 Acer truncatum HOM05D004381 ORTHO05D005200 2.5e-18 95.1 57 78.9
Cfa009743 Carpinus fangiana HOM05D004381 ORTHO05D005200 3.3e-18 94.7 57 78.9
Duzib150G0594 Durio zibethinus HOM05D004381 ORTHO05D005200 3.3e-18 94.7 57 78.9
Migut.D00582 Erythranthe guttata HOM05D004381 ORTHO05D005200 3.3e-18 94.7 57 78.9
FvH4_3g43050 Fragaria vesca HOM05D004381 ORTHO05D005200 3.3e-18 94.7 57 77.2
FAN11G3745 Fragaria x ananassa HOM05D004381 ORTHO05D005200 3.3e-18 94.7 57 77.2
FAN16G2672 Fragaria x ananassa HOM05D004381 ORTHO05D005200 3.3e-18 94.7 57 77.2
FAN21G3999 Fragaria x ananassa HOM05D004381 ORTHO05D005200 3.3e-18 94.7 57 77.2
FAN25G0848 Fragaria x ananassa HOM05D004381 ORTHO05D005200 3.3e-18 94.7 57 77.2
RcHm_v2.0_Chr5g0077111 Rosa chinensis HOM05D004381 ORTHO05D005200 3.3e-18 94.7 57 77.2
Ah.06g193660 Amaranthus hybridus HOM05D004381 ORTHO05D005200 4.2e-18 94.4 57 78.9
CANSAT35G1357 Cannabis sativa HOM05D004381 ORTHO05D005200 4.2e-18 94.4 57 75.4
CAN.G71.8 Capsicum annuum HOM05D004381 ORTHO05D005200 4.2e-18 94.4 59 76.3
AUR62000098 Chenopodium quinoa HOM05D004381 ORTHO05D005200 4.2e-18 94.4 56 80.4
Glyma.13G340900 Glycine max HOM05D004381 ORTHO05D005200 4.2e-18 94.4 57 78.9
Glyma.15G033500 Glycine max HOM05D004381 ORTHO05D005200 4.2e-18 94.4 57 78.9
Lj1A348T17 Lonicera japonica HOM05D004381 ORTHO05D005200 4.2e-18 94.4 56 80.4
MBI04_g13625_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 4.2e-18 94.4 57 78.9
MD11G1029400 Malus domestica HOM05D004381 ORTHO05D005200 4.2e-18 94.4 57 78.9
Manes.06G166500 Manihot esculenta HOM05D004381 ORTHO05D005200 4.2e-18 94.4 57 78.9
Peaxi162Scf00029g02914 Petunia axillaris HOM05D004381 ORTHO05D005200 4.2e-18 94.4 59 76.3
Phvul.L011443 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 4.2e-18 94.4 57 78.9
TAR623G1292 Trochodendron aralioides HOM05D004381 ORTHO05D005200 4.2e-18 94.4 57 78.9
VMungo1080G0554 Vigna mungo HOM05D004381 ORTHO05D005200 4.2e-18 94.4 57 78.9
arahy.Tifrunner.gnm1.ann1.E88S00 Arachis hypogaea HOM05D004381 ORTHO05D005200 5.5e-18 94.0 57 78.9
arahy.Tifrunner.gnm1.ann1.T21L4I Arachis hypogaea HOM05D004381 ORTHO05D005200 5.5e-18 94.0 57 78.9
Cpa.g.sc84.75 Carica papaya HOM05D004381 ORTHO05D005200 5.5e-18 94.0 57 78.9
CiPaw.13G163200 Carya illinoinensis HOM05D004381 ORTHO05D005200 5.5e-18 94.0 57 78.9
Ciclev10016213m.g Citrus clementina HOM05D004381 ORTHO05D005200 5.5e-18 94.0 57 78.9
Dinv36273 Davidia involucrata HOM05D004381 ORTHO05D005200 5.5e-18 94.0 57 78.9
Gohir.A08G013200 Gossypium hirsutum HOM05D004381 ORTHO05D005200 5.5e-18 94.0 57 78.9
Gohir.D08G023600 Gossypium hirsutum HOM05D004381 ORTHO05D005200 5.5e-18 94.0 57 78.9
Gorai.004G018900 Gossypium raimondii HOM05D004381 ORTHO05D005200 5.5e-18 94.0 57 78.9
HanXRQChr02g0056281 Helianthus annuus HOM05D004381 ORTHO05D005200 5.5e-18 94.0 57 78.9
MD03G1024300 Malus domestica HOM05D004381 ORTHO05D005200 5.5e-18 94.0 57 77.2
Medtr2g098150 Medicago truncatula HOM05D004381 ORTHO05D005200 5.5e-18 94.0 57 78.9
Potri.003G205100 Populus trichocarpa HOM05D004381 ORTHO05D005200 5.5e-18 94.0 57 78.9
DCAR_031567 Daucus carota HOM05D004381 ORTHO05D005200 7.2e-18 93.6 57 77.2
Lalb_Chr22g0352331 Lupinus albus HOM05D004381 ORTHO05D005200 7.2e-18 93.6 57 77.2
GSVIVG01025302001 Vitis vinifera HOM05D004381 ORTHO05D005200 7.2e-18 93.6 57 78.9
CDE10G0019 Ceratophyllum demersum HOM05D004381 ORTHO05D005200 9.5e-18 93.2 57 77.2
Solyc11g062020.2 Solanum lycopersicum HOM05D004381 ORTHO05D005200 9.5e-18 93.2 57 77.2
Sopen11g023990 Solanum pennellii HOM05D004381 ORTHO05D005200 9.5e-18 93.2 57 77.2
Thecc.09G228300 Theobroma cacao HOM05D004381 ORTHO05D005200 9.5e-18 93.2 57 77.2
Aqoxy7G00799 Aquilegia oxysepala HOM05D004381 ORTHO05D005200 1.2e-17 92.8 57 77.2
MSTRG.21391 Avicennia marina HOM05D004381 ORTHO05D005200 1.2e-17 92.8 57 78.9
COL.COLO4_24848 Corchorus olitorius HOM05D004381 ORTHO05D005200 1.2e-17 92.8 57 77.2
MELO3C014607.2 Cucumis melo HOM05D004381 ORTHO05D005200 1.2e-17 92.8 57 77.2
CsaV3_4G024140 Cucumis sativus L. HOM05D004381 ORTHO05D005200 1.2e-17 92.8 57 77.2
Lsat_1_v5_gn_6_48200 Lactuca sativa HOM05D004381 ORTHO05D005200 1.2e-17 92.8 57 77.2
Nitab4.5_0000492g0060 Nicotiana tabacum HOM05D004381 ORTHO05D005200 1.2e-17 92.8 58 75.9
Nitab4.5_0002026g0030 Nicotiana tabacum HOM05D004381 ORTHO05D005200 1.2e-17 92.8 58 75.9
QL01p005255 Quercus lobata HOM05D004381 ORTHO05D005200 1.2e-17 92.8 57 77.2
Duzib168G0673 Durio zibethinus HOM05D004381 ORTHO05D005200 1.6e-17 92.4 65 70.8
PSO210G6888 Papaver somniferum HOM05D004381 ORTHO05D005200 1.6e-17 92.4 57 77.2
Eucgr.J00789 Eucalyptus grandis HOM05D004381 ORTHO05D005200 2.1e-17 92.0 57 75.4
Oeu035739.1 Olea europaea HOM05D004381 ORTHO05D005200 2.1e-17 92.0 56 78.6
Oeu052046.2 Olea europaea HOM05D004381 ORTHO05D005200 2.1e-17 92.0 56 78.6
PSO210G5188 Papaver somniferum HOM05D004381 ORTHO05D005200 2.1e-17 92.0 57 77.2
Prupe.6G023700 Prunus persica HOM05D004381 ORTHO05D005200 2.1e-17 92.0 57 75.4
arahy.Tifrunner.gnm1.ann1.LPI13M Arachis hypogaea HOM05D004381 ORTHO05D005200 2.8e-17 91.7 57 77.2
Migut.O00580 Erythranthe guttata HOM05D004381 ORTHO05D005200 2.8e-17 91.7 57 75.4
Nn7g36163 Nelumbo nucifera HOM05D004381 ORTHO05D005200 2.8e-17 91.7 57 75.4
Potri.001G018800 Populus trichocarpa HOM05D004381 ORTHO05D005200 2.8e-17 91.7 57 77.2
Sabra01G0013400 Salix brachista HOM05D004381 ORTHO05D005200 2.8e-17 91.7 57 77.2
Sabra03G0151600 Salix brachista HOM05D004381 ORTHO05D005200 2.8e-17 91.7 65 67.7
arahy.Tifrunner.gnm1.ann1.H592TP Arachis hypogaea HOM05D004381 ORTHO05D005200 3.6e-17 91.3 57 75.4
Gohir.D11G292000 Gossypium hirsutum HOM05D004381 ORTHO05D005200 3.6e-17 91.3 57 75.4
Gorai.007G316100 Gossypium raimondii HOM05D004381 ORTHO05D005200 3.6e-17 91.3 57 75.4
Hma1.2p1_0118F.1_g056480 Hydrangea macrophylla HOM05D004381 ORTHO05D005200 3.6e-17 91.3 56 76.8
Nn2g15439 Nelumbo nucifera HOM05D004381 ORTHO05D005200 3.6e-17 91.3 65 67.7
THA.LOC104817902 Tarenaya hassleriana HOM05D004381 ORTHO05D005200 3.6e-17 91.3 57 77.2
TWI60G0262 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 3.6e-17 91.3 57 75.4
MSTRG.18417 Avicennia marina HOM05D004381 ORTHO05D005200 4.7e-17 90.9 57 75.4
ECA233G0542 Erigeron canadensis HOM05D004381 ORTHO05D005200 4.7e-17 90.9 57 75.4
MBI01_g27615_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 6.1e-17 90.5 65 70.8
vmacro04193 Vaccinium macrocarpon HOM05D004381 ORTHO05D005200 6.1e-17 90.5 56 75.0
Zm00001eb205960 Zea mays HOM05D004381 ORTHO05D005200 6.1e-17 90.5 57 75.4
Sed0000340 Sechium edule HOM05D004381 ORTHO05D005200 8.0e-17 90.1 57 71.9
SEGI_07837 Sequoiadendron giganteum HOM05D004381 ORTHO05D005200 8.0e-17 90.1 57 75.4
Aa31LG8G7690 Aethionema arabicum HOM05D004381 ORTHO05D005200 1.0e-16 89.7 57 73.7
ATR0605G196 Amborella trichopoda HOM05D004381 ORTHO05D005200 1.0e-16 89.7 57 75.4
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 1.0e-16 89.7 57 73.7
A05p27840 Brassica napus HOM05D004381 ORTHO05D005200 1.0e-16 89.7 57 73.7
C05p43180 Brassica napus HOM05D004381 ORTHO05D005200 1.0e-16 89.7 57 73.7
BolC5t33048H Brassica oleracea HOM05D004381 ORTHO05D005200 1.0e-16 89.7 57 73.7
BraA05t21671Z Brassica rapa HOM05D004381 ORTHO05D005200 1.0e-16 89.7 57 73.7
Thhalv10021300m.g Eutrema salsugineum HOM05D004381 ORTHO05D005200 1.0e-16 89.7 57 73.7
Sp3g18900 Schrenkiella parvula HOM05D004381 ORTHO05D005200 1.0e-16 89.7 57 73.7
unitig_26.g10132 Utricularia gibba HOM05D004381 ORTHO05D005200 1.4e-16 89.4 57 71.9
CARHR096750 Cardamine hirsuta HOM05D004381 ORTHO05D005200 1.8e-16 89.0 57 73.7
TWI34G1572 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 1.8e-16 89.0 57 71.9
AL3G34820 Arabidopsis lyrata HOM05D004381 ORTHO05D005200 2.3e-16 88.6 57 73.7
AT3G20870 Arabidopsis thaliana HOM05D004381 ORTHO05D005200 2.3e-16 88.6 57 73.7
Carub.0003s2085 Capsella rubella HOM05D004381 ORTHO05D005200 2.3e-16 88.6 57 73.7
Actinidia16315 Actinidia chinensis HOM05D004381 ORTHO05D005200 3.0e-16 88.2 57 71.9
HPP92_020510 Vanilla planifolia HOM05D004381 ORTHO05D005200 1.2e-15 86.3 57 71.9
CiPaw.14G121000 Carya illinoinensis HOM05D004381 ORTHO05D005200 1.5e-15 85.9 57 73.7
Zm00001eb213530 Zea mays HOM05D004381 ORTHO05D005200 1.5e-15 85.9 57 70.2
MSTRG.21390 Avicennia marina HOM05D004381 ORTHO05D005200 3.4e-15 84.7 57 68.4
ClCG02G023360 Citrullus lanatus HOM05D004381 ORTHO05D005200 9.8e-15 83.2 50 78.0
Mapoly0039s0091 Marchantia polymorpha HOM05D004381 ORTHO05D005200 3.7e-14 81.3 65 58.5
arahy.Tifrunner.gnm1.ann1.9W75VL Arachis hypogaea HOM05D004381 ORTHO05D005200 1.8e-13 79.0 42 83.3
SMO347G0569 Selaginella moellendorffii HOM05D004381 ORTHO05D005200 9.2e-13 76.6 57 59.6
AagrBONN_evm.TU.Sc2ySwM_362.691 Anthoceros agrestis HOM05D004381 ORTHO05D005200 1.6e-12 75.9 60 55.0
arahy.Tifrunner.gnm1.ann1.T6H5I3 Arachis hypogaea HOM05D004381 ORTHO05D005200 2.7e-12 75.1 42 81.0
Pp3c16_16530 Physcomitrium patens HOM05D004381 ORTHO05D005200 5.0e-11 70.9 65 49.2
TPR.G33171 Trifolium pratense HOM05D004381 ORTHO05D005200 3.3e-10 68.2 47 63.8
HanXRQChr17g0534131 Helianthus annuus HOM05D004381 ORTHO05D005200 1.2e-09 66.2 45 68.9
MBI09_g41969_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 6.2e-09 63.9 44 70.5
Os08g0100200 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 1.5e-07 59.3 49 55.1


User provided reference genes

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