Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G060600 Glycine max HOM05D007101 ORTHO05D008632 4.0e-266 921.8 876 100.0
Phvul.002G220400 Phaseolus vulgaris HOM05D007101 ORTHO05D008632 3.0e-205 719.5 883 87.0
VMungo0251G0107 Vigna mungo HOM05D007101 ORTHO05D008632 1.2e-204 717.6 880 84.0
Lj4g0005302 Lotus japonicus HOM05D007101 ORTHO05D008632 1.1e-159 568.2 874 78.7
Ca_18469_v3 Cicer arietinum L. HOM05D007101 ORTHO05D008632 5.6e-159 565.8 869 80.8
Ca_30070_v3 Cicer arietinum L. HOM05D007101 ORTHO05D008632 5.6e-159 565.8 869 80.8
arahy.Tifrunner.gnm1.ann1.RGU3X9 Arachis hypogaea HOM05D007101 ORTHO05D008632 7.3e-159 565.5 881 79.3
Lalb_Chr05g0218081 Lupinus albus HOM05D007101 ORTHO05D008632 1.2e-148 531.6 871 75.4
TPR.G15380 Trifolium pratense HOM05D007101 ORTHO05D008632 1.1e-146 525.0 867 79.0
arahy.Tifrunner.gnm1.ann1.RR3D2P Arachis hypogaea HOM05D007101 ORTHO05D008632 4.5e-140 503.1 881 77.0
arahy.Tifrunner.gnm1.ann1.X169V3 Arachis hypogaea HOM05D007101 ORTHO05D008632 5.5e-122 443.0 847 73.1
Medtr4g091600 Medicago truncatula HOM05D007101 ORTHO05D008632 6.0e-121 439.5 879 72.6
Glyma.07G188700 Glycine max HOM05D007101 ORTHO05D008632 3.4e-108 397.1 876 49.2
RcHm_v2.0_Chr6g0280761 Rosa chinensis HOM05D007101 ORTHO05D008632 1.0e-107 395.6 872 69.5
Cfa005353 Carpinus fangiana HOM05D007101 ORTHO05D008632 7.2e-106 389.4 880 70.3
Prupe.8G178500 Prunus persica HOM05D007101 ORTHO05D008632 1.5e-87 328.6 873 68.4
TWI15G0633 Tripterygium wilfordii HOM05D007101 ORTHO05D008632 1.7e-86 325.1 870 66.4
FAN15G1235 Fragaria x ananassa HOM05D007101 ORTHO05D008632 2.2e-86 324.7 866 68.2
Sed0027220 Sechium edule HOM05D007101 ORTHO05D008632 2.2e-86 324.7 879 63.6
QL11p055950 Quercus lobata HOM05D007101 ORTHO05D008632 1.1e-85 322.4 882 68.0
CSS0049741 Camellia sinensis var. sinensis HOM05D007101 ORTHO05D008632 1.4e-85 322.0 873 64.6
CiPaw.06G116300 Carya illinoinensis HOM05D007101 ORTHO05D008632 1.8e-85 321.6 873 65.6
Dinv41876 Davidia involucrata HOM05D007101 ORTHO05D008632 5.3e-85 320.1 881 58.2
Actinidia17999 Actinidia chinensis HOM05D007101 ORTHO05D008632 7.0e-85 319.7 871 67.5
GSVIVG01023885001 Vitis vinifera HOM05D007101 ORTHO05D008632 7.0e-85 319.7 875 68.1
Haze_02013 Corylus avellana HOM05D007101 ORTHO05D008632 1.2e-84 318.9 875 68.5
Manes.11G110800 Manihot esculenta HOM05D007101 ORTHO05D008632 2.2e-83 314.7 874 68.3
FvH4_2g16640 Fragaria vesca HOM05D007101 ORTHO05D008632 1.6e-81 308.5 860 68.0
COL.COLO4_17930 Corchorus olitorius HOM05D007101 ORTHO05D008632 6.1e-81 306.6 872 61.9
ClCG02G003480 Citrullus lanatus HOM05D007101 ORTHO05D008632 1.0e-80 305.8 881 65.3
TAR376G1071 Trochodendron aralioides HOM05D007101 ORTHO05D008632 1.8e-80 305.1 870 65.6
MD10G1139700 Malus domestica HOM05D007101 ORTHO05D008632 4.0e-80 303.9 871 67.3
Duzib132G1059 Durio zibethinus HOM05D007101 ORTHO05D008632 5.2e-80 303.5 869 64.2
Cpa.g.sc20.207 Carica papaya HOM05D007101 ORTHO05D008632 2.8e-78 297.7 874 63.0
Sabra04G0138800 Salix brachista HOM05D007101 ORTHO05D008632 1.2e-73 282.3 877 66.4
MELO3C013256.2 Cucumis melo HOM05D007101 ORTHO05D008632 6.1e-73 280.0 881 59.7
Rhsim01G0003500 Rhododendron simsii HOM05D007101 ORTHO05D008632 1.0e-72 279.3 874 63.8
CsaV3_7G001820 Cucumis sativus L. HOM05D007101 ORTHO05D008632 1.4e-72 278.9 881 59.7
Potri.004G205600 Populus trichocarpa HOM05D007101 ORTHO05D008632 1.4e-72 278.9 876 66.3
BcaB03g16462 Brassica carinata HOM05D007101 ORTHO05D008632 1.8e-69 268.5 874 64.4
Aa31LG8G14540 Aethionema arabicum HOM05D007101 ORTHO05D008632 1.0e-67 262.7 871 64.6
AL3G49990 Arabidopsis lyrata HOM05D007101 ORTHO05D008632 1.5e-66 258.8 873 64.1
C07p06350 Brassica napus HOM05D007101 ORTHO05D008632 3.3e-66 257.7 867 64.5
THA.LOC104819686 Tarenaya hassleriana HOM05D007101 ORTHO05D008632 2.1e-65 255.0 871 61.9
Aqoxy6G01656 Aquilegia oxysepala HOM05D007101 ORTHO05D008632 1.5e-63 248.8 873 61.2
TAR629G2938 Trochodendron aralioides HOM05D007101 ORTHO05D008632 2.0e-63 248.4 205 61.5
Ah.01g023750 Amaranthus hybridus HOM05D000564 ORTHO05D002780 3.4e-63 247.7 859 63.0
Thhalv10022542m.g Eutrema salsugineum HOM05D007101 ORTHO05D008632 3.4e-63 247.7 874 63.3
A07p03990 Brassica napus HOM05D007101 ORTHO05D008632 1.2e-60 239.2 867 63.8
BraA07t28190Z Brassica rapa HOM05D007101 ORTHO05D008632 1.2e-60 239.2 867 63.7
vmacro02332 Vaccinium macrocarpon HOM05D007101 ORTHO05D008632 1.6e-60 238.8 889 62.1
BcaC06g36224 Brassica carinata HOM05D007101 ORTHO05D008632 4.6e-60 237.3 867 63.7
CARHR293460 Cardamine hirsuta HOM05D007101 ORTHO05D008632 7.8e-60 236.5 878 63.0
Eucgr.I01520 Eucalyptus grandis HOM05D007101 ORTHO05D008632 1.7e-59 235.3 869 61.8
Cc03_g11620 Coffea canephora HOM05D007101 ORTHO05D008632 5.0e-59 233.8 445 56.2
Thecc.02G044400 Theobroma cacao HOM05D007101 ORTHO05D008632 5.0e-59 233.8 874 61.3
AT2G17140 Arabidopsis thaliana HOM05D007101 ORTHO05D008632 3.3e-58 231.1 873 63.2
Gorai.012G159300 Gossypium raimondii HOM05D007101 ORTHO05D008632 2.8e-57 228.0 869 61.4
SGA_v2.0_scaffold32G13346 Striga asiatica HOM05D007101 ORTHO05D008632 2.8e-57 228.0 864 61.2
BolC7t41051H Brassica oleracea HOM05D007101 ORTHO05D008632 4.7e-57 227.3 862 63.6
Gohir.D04G170700 Gossypium hirsutum HOM05D007101 ORTHO05D008632 4.7e-57 227.3 869 61.4
Peaxi162Scf00818g00019 Petunia axillaris HOM05D007101 ORTHO05D008632 4.7e-57 227.3 871 60.3
PGR142G0716 Punica granatum HOM05D007101 ORTHO05D008632 1.4e-56 225.7 882 61.1
MBI06_g35039_MAGBIO Magnolia biondii HOM05D007101 ORTHO05D008632 2.3e-56 224.9 903 55.1
Gohir.A04G125700 Gossypium hirsutum HOM05D007101 ORTHO05D008632 3.4e-55 221.1 869 61.1
CAN.G157.9 Capsicum annuum HOM05D007101 ORTHO05D008632 5.8e-55 220.3 867 63.8
PGSC0003DMG400019836 Solanum tuberosum HOM05D007101 ORTHO05D008632 1.3e-54 219.2 366 67.5
Ciclev10027787m.g Citrus clementina HOM05D007101 ORTHO05D008632 4.1e-53 214.2 874 59.8
Lj9A406T59 Lonicera japonica HOM05D007101 ORTHO05D008632 5.4e-53 213.8 870 63.6
SalBow1G7566 Salvia bowleyana HOM05D007101 ORTHO05D008632 1.2e-52 212.6 860 58.0
Solyc02g021020.4 Solanum lycopersicum HOM05D007101 ORTHO05D008632 4.6e-52 210.7 367 66.8
Sopen02g005320 Solanum pennellii HOM05D007101 ORTHO05D008632 6.0e-52 210.3 366 66.7
Sc14g0002450 Simmondsia chinensis HOM05D007101 ORTHO05D008632 1.0e-51 209.5 879 57.1
EL10Ac9g21242 Beta vulgaris HOM05D007101 ORTHO05D008632 3.9e-51 207.6 876 63.0
Oeu059796.1 Olea europaea HOM05D007101 ORTHO05D008632 3.9e-51 207.6 197 52.8
Migut.B00010 Erythranthe guttata HOM05D007101 ORTHO05D008632 4.3e-50 204.1 368 66.0
MSTRG.17820 Avicennia marina HOM05D007101 ORTHO05D008632 1.2e-49 202.6 858 63.3
Hund06163 Selenicereus undatus HOM05D007101 ORTHO05D008632 3.6e-49 201.1 878 62.1
Carub.0003s3107 Capsella rubella HOM05D007101 ORTHO05D008632 1.7e-46 192.2 871 61.5
AUR62027126 Chenopodium quinoa HOM05D007101 ORTHO05D008632 3.7e-46 191.0 368 64.9
AUR62012916 Chenopodium quinoa HOM05D007101 ORTHO05D008632 1.1e-45 189.5 383 62.9
Atru.chr5.3546 Acer truncatum HOM05D007101 ORTHO05D008632 2.4e-45 188.3 783 67.4
Nitab4.5_0000526g0060 Nicotiana tabacum HOM05D007101 ORTHO05D008632 9.2e-45 186.4 837 60.0
DCAR_015659 Daucus carota HOM05D000046 ORTHO05D008632 2.7e-44 184.9 877 58.2
Nitab4.5_0006710g0010 Nicotiana tabacum HOM05D007101 ORTHO05D008632 1.3e-43 182.6 837 59.7
SHI10554 Sapria himalayana HOM05D007101 ORTHO05D008632 1.3e-43 182.6 829 59.5
FAN24G2347 Fragaria x ananassa HOM05D007101 ORTHO05D008632 8.6e-43 179.9 858 62.8
ECA233G4336 Erigeron canadensis HOM05D000046 ORTHO05D014757 5.2e-40 170.6 365 61.4
VMungo0251G1721 Vigna mungo HOM05D007101 ORTHO05D008632 4.9e-38 164.1 102 81.4
PSO675G0367 Papaver somniferum HOM05D007101 ORTHO05D008632 8.4e-38 163.3 875 59.9
Rhsim11G0197400 Rhododendron simsii HOM05D007101 ORTHO05D008632 2.4e-37 161.8 415 47.2
Lsat_1_v5_gn_8_121281 Lactuca sativa HOM05D007101 ORTHO05D008632 3.5e-36 157.9 183 44.3
HanXRQChr12g0374451 Helianthus annuus HOM05D007101 ORTHO05D008632 1.7e-35 155.6 178 45.5
Nn1g05331 Nelumbo nucifera HOM05D007101 ORTHO05D008632 1.7e-35 155.6 871 55.9
Os02g0132100 Oryza sativa ssp. japonica HOM05D007101 ORTHO05D008632 1.6e-33 149.1 389 57.3
Zm00001eb209030 Zea mays HOM05D007101 ORTHO05D008632 1.4e-32 146.0 388 58.0
unitig_32.g11014 Utricularia gibba HOM05D007101 ORTHO05D008632 7.6e-31 140.2 190 40.5
MD05G1134700 Malus domestica HOM05D007101 ORTHO05D008632 2.3e-27 128.6 236 36.9
TAR629G1847 Trochodendron aralioides HOM05D007101 ORTHO05D008632 1.1e-26 126.3 326 31.3
HPP92_025842 Vanilla planifolia HOM05D007101 ORTHO05D008632 6.2e-25 120.6 392 53.8
Sp3g30480 Schrenkiella parvula HOM05D007101 ORTHO05D008632 6.9e-24 117.1 143 42.0
ATR0618G240 Amborella trichopoda HOM05D007101 ORTHO05D008632 5.8e-23 114.0 393 53.9
CDE04G2490 Ceratophyllum demersum HOM05D007101 ORTHO05D008632 2.2e-22 112.1 286 29.0
Gohir.D06G112750 Gossypium hirsutum HOM05D007101 ORTHO05D019476 1.9e-18 99.0 100 69.0
Gorai.008G096400 Gossypium raimondii HOM05D007101 ORTHO05D008632 9.6e-18 96.7 145 40.0
MD05G1134600 Malus domestica HOM05D007101 ORTHO05D008632 1.1e-16 93.2 320 60.3
THA.LOC104807397 Tarenaya hassleriana HOM05D007101 ORTHO05D008632 1.6e-12 79.3 114 42.1


User provided reference genes

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