Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G057251 Glycine max HOM05D005071 ORTHO05D006069 1.4e-53 212.6 105 100.0
Prupe.8G055600 Prunus persica HOM05D005071 ORTHO05D006069 2.0e-34 149.1 105 71.4
TPR.G1402 Trifolium pratense HOM05D005071 ORTHO05D006069 7.0e-32 140.6 75 84.0
Glyma.05G248600 Glycine max HOM05D005071 ORTHO05D006069 9.1e-32 140.2 75 86.7
Medtr8g107670 Medicago truncatula HOM05D005071 ORTHO05D006069 9.1e-32 140.2 75 84.0
LjContig00484g0022264 Lotus japonicus HOM05D005071 ORTHO05D006069 2.6e-31 138.7 75 82.7
VMungo0251G2121 Vigna mungo HOM05D005071 ORTHO05D006069 4.5e-31 137.9 75 85.3
Phvul.002G332800 Phaseolus vulgaris HOM05D005071 ORTHO05D006069 7.7e-31 137.1 75 84.0
Psat7g000520 Pisum sativum HOM05D005071 ORTHO05D006069 7.7e-31 137.1 75 82.7
Thecc.03G069100 Theobroma cacao HOM05D005071 ORTHO05D006069 3.2e-29 131.7 75 76.0
Gohir.A11G001600 Gossypium hirsutum HOM05D005071 ORTHO05D006069 5.5e-29 131.0 75 74.7
arahy.Tifrunner.gnm1.ann1.ESBK1T Arachis hypogaea HOM05D005071 ORTHO05D006069 1.2e-28 129.8 75 78.7
CAN.G637.11 Capsicum annuum HOM05D005071 ORTHO05D006069 2.1e-28 129.0 75 74.7
Cfa020677 Carpinus fangiana HOM05D005071 ORTHO05D006069 2.1e-28 129.0 75 76.0
Duzib068G1262 Durio zibethinus HOM05D005071 ORTHO05D006069 2.1e-28 129.0 75 73.3
Gorai.007G002100 Gossypium raimondii HOM05D005071 ORTHO05D006069 2.1e-28 129.0 75 73.3
Lalb_Chr09g0330201 Lupinus albus HOM05D005071 ORTHO05D006069 2.1e-28 129.0 75 77.3
Ca_17169_v3 Cicer arietinum L. HOM05D005071 ORTHO05D006069 2.7e-28 128.6 68 85.3
Haze_18981 Corylus avellana HOM05D005071 ORTHO05D006069 3.6e-28 128.3 68 82.4
Peaxi162Scf00171g00532 Petunia axillaris HOM05D005071 ORTHO05D006069 3.6e-28 128.3 75 74.7
Cpa.g.sc7.143 Carica papaya HOM05D005071 ORTHO05D006069 4.7e-28 127.9 75 76.0
MD14G1242800 Malus domestica HOM05D005071 ORTHO05D006069 4.7e-28 127.9 75 73.3
Aa31LG10G5350 Aethionema arabicum HOM05D005071 ORTHO05D006069 6.1e-28 127.5 75 73.3
Atru.chr9.1568 Acer truncatum HOM05D005071 ORTHO05D006069 1.0e-27 126.7 93 65.6
Nitab4.5_0001180g0110 Nicotiana tabacum HOM05D005071 ORTHO05D006069 1.0e-27 126.7 75 72.0
Gohir.D11G001200 Gossypium hirsutum HOM05D005071 ORTHO05D006069 1.4e-27 126.3 75 70.7
MELO3C001942.2 Cucumis melo HOM05D005071 ORTHO05D006069 1.8e-27 125.9 75 73.3
CANSAT80G1805 Cannabis sativa HOM05D005071 ORTHO05D006069 2.3e-27 125.6 75 73.3
PGR083G1095 Punica granatum HOM05D005071 ORTHO05D006069 2.3e-27 125.6 75 74.7
Peaxi162Scf00171g00533 Petunia axillaris HOM05D005071 ORTHO05D006069 3.0e-27 125.2 75 72.0
PGSC0003DMG400031041 Solanum tuberosum HOM05D005071 ORTHO05D006069 3.0e-27 125.2 75 70.7
QL10p032932 Quercus lobata HOM05D005071 ORTHO05D006069 4.0e-27 124.8 74 70.3
QL10p033020 Quercus lobata HOM05D005071 ORTHO05D006069 4.0e-27 124.8 74 70.3
Eucgr.H00596 Eucalyptus grandis HOM05D005071 ORTHO05D006069 5.2e-27 124.4 75 69.3
Nitab4.5_0003066g0040 Nicotiana tabacum HOM05D005071 ORTHO05D006069 6.7e-27 124.0 75 70.7
Solyc03g098230.3 Solanum lycopersicum HOM05D005071 ORTHO05D006069 6.7e-27 124.0 75 70.7
Sopen03g028930 Solanum pennellii HOM05D005071 ORTHO05D006069 6.7e-27 124.0 75 70.7
CsaV3_1G005050 Cucumis sativus L. HOM05D005071 ORTHO05D006069 8.8e-27 123.6 75 72.0
Peaxi162Scf00171g00530 Petunia axillaris HOM05D005071 ORTHO05D006069 8.8e-27 123.6 75 70.7
Actinidia17702 Actinidia chinensis HOM05D005071 ORTHO05D006069 1.1e-26 123.2 75 70.7
TWI81G0487 Tripterygium wilfordii HOM05D005071 ORTHO05D006069 1.5e-26 122.9 75 70.7
Potri.012G038900 Populus trichocarpa HOM05D005071 ORTHO05D006069 2.0e-26 122.5 75 72.0
CiPaw.16G100100 Carya illinoinensis HOM05D005071 ORTHO05D006069 2.6e-26 122.1 75 70.7
Prupe.5G240500 Prunus persica HOM05D005071 ORTHO05D006069 2.6e-26 122.1 75 73.3
Sed0005435 Sechium edule HOM05D005071 ORTHO05D006069 3.3e-26 121.7 75 69.3
Carub.0001s3754 Capsella rubella HOM05D005071 ORTHO05D006069 4.4e-26 121.3 75 70.7
BcaB07g33760 Brassica carinata HOM05D005071 ORTHO05D006069 5.7e-26 120.9 75 69.3
THA.LOC104820332 Tarenaya hassleriana HOM05D005071 ORTHO05D006069 5.7e-26 120.9 75 72.0
THA.LOC104809825 Tarenaya hassleriana HOM05D005071 ORTHO05D006069 7.5e-26 120.6 73 72.6
AT1G48420 Arabidopsis thaliana HOM05D005071 ORTHO05D006069 9.7e-26 120.2 75 69.3
MSTRG.23199 Avicennia marina HOM05D005071 ORTHO05D006069 9.7e-26 120.2 75 68.0
AL1G55050 Arabidopsis lyrata HOM05D005071 ORTHO05D006069 1.3e-25 119.8 75 69.3
BcaC08g43037 Brassica carinata HOM05D005071 ORTHO05D006069 1.3e-25 119.8 75 68.0
A06p04490 Brassica napus HOM05D005071 ORTHO05D006069 1.3e-25 119.8 75 68.0
C06p02970 Brassica napus HOM05D005071 ORTHO05D006069 1.3e-25 119.8 75 68.0
BolC6t35420H Brassica oleracea HOM05D005071 ORTHO05D006069 1.3e-25 119.8 75 68.0
BraA06t23653Z Brassica rapa HOM05D005071 ORTHO05D006069 1.3e-25 119.8 75 68.0
CiPaw.16G099900 Carya illinoinensis HOM05D005071 ORTHO05D006069 1.3e-25 119.8 75 68.0
Ciclev10024301m.g Citrus clementina HOM05D005071 ORTHO05D006069 1.3e-25 119.8 75 69.3
Hma1.2p1_0493F.1_g165090 Hydrangea macrophylla HOM05D005071 ORTHO05D006069 1.3e-25 119.8 75 68.0
MBI19_g02947_MAGBIO Magnolia biondii HOM05D005071 ORTHO05D006069 1.3e-25 119.8 75 66.7
MBI19_g46696_MAGBIO Magnolia biondii HOM05D005071 ORTHO05D006069 1.3e-25 119.8 75 66.7
TAR622G0642 Trochodendron aralioides HOM05D005071 ORTHO05D006069 1.3e-25 119.8 75 69.3
Aqoxy3G04133 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 1.7e-25 119.4 75 68.0
Lj5C165T19 Lonicera japonica HOM05D005071 ORTHO05D006069 2.2e-25 119.0 75 64.0
MD06G1235700 Malus domestica HOM05D005071 ORTHO05D006069 2.2e-25 119.0 76 72.4
Os02g0773300 Oryza sativa ssp. japonica HOM05D005071 ORTHO05D006069 2.2e-25 119.0 75 69.3
EL10Ac8g19579 Beta vulgaris HOM05D005071 ORTHO05D006069 2.8e-25 118.6 75 66.7
CARHR038040 Cardamine hirsuta HOM05D005071 ORTHO05D006069 2.8e-25 118.6 75 68.0
Sabra12G0027400 Salix brachista HOM05D005071 ORTHO05D006069 2.8e-25 118.6 75 69.3
Sp1g35370 Schrenkiella parvula HOM05D005071 ORTHO05D006069 2.8e-25 118.6 75 68.0
GSVIVG01000389001 Vitis vinifera HOM05D005071 ORTHO05D006069 2.8e-25 118.6 75 66.7
HanXRQChr16g0503311 Helianthus annuus HOM05D005071 ORTHO05D006069 3.7e-25 118.2 75 69.3
Lsat_1_v5_gn_0_10481 Lactuca sativa HOM05D005071 ORTHO05D006069 4.8e-25 117.9 75 66.7
AUR62042043 Chenopodium quinoa HOM05D005071 ORTHO05D006069 6.3e-25 117.5 75 64.0
Cc04_g09040 Coffea canephora HOM05D005071 ORTHO05D006069 6.3e-25 117.5 75 69.3
Thhalv10011539m.g Eutrema salsugineum HOM05D005071 ORTHO05D006069 8.2e-25 117.1 75 68.0
SGA_v2.0_scaffold25G10767 Striga asiatica HOM05D005071 ORTHO05D006069 8.2e-25 117.1 75 64.0
arahy.Tifrunner.gnm1.ann1.ZJN9EZ Arachis hypogaea HOM05D005071 ORTHO05D006069 1.4e-24 116.3 68 76.5
FAN08G1527 Fragaria x ananassa HOM05D005071 ORTHO05D006069 1.8e-24 115.9 75 69.3
Aqoxy3G01487 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 2.4e-24 115.5 71 69.0
Haze_18975 Corylus avellana HOM05D000565 ORTHO05D006069 2.4e-24 115.5 63 79.4
FvH4_5g18030 Fragaria vesca HOM05D005071 ORTHO05D006069 3.1e-24 115.2 75 69.3
RcHm_v2.0_Chr7g0177581 Rosa chinensis HOM05D005071 ORTHO05D006069 4.1e-24 114.8 75 70.7
Dinv06025 Davidia involucrata HOM05D005071 ORTHO05D006069 5.3e-24 114.4 75 64.0
Dinv17781 Davidia involucrata HOM05D005071 ORTHO05D006069 5.3e-24 114.4 75 64.0
unitig_750.g28458 Utricularia gibba HOM05D005071 ORTHO05D006069 5.3e-24 114.4 75 65.3
Zm00001eb256470 Zea mays HOM05D005071 ORTHO05D006069 7.0e-24 114.0 75 64.0
ATR0598G263 Amborella trichopoda HOM05D005071 ORTHO05D006069 9.1e-24 113.6 75 66.7
DCAR_013703 Daucus carota HOM05D005071 ORTHO05D006069 9.1e-24 113.6 75 64.0
FAN04G0665 Fragaria x ananassa HOM05D005071 ORTHO05D006069 9.1e-24 113.6 75 68.0
FAN13G1354 Fragaria x ananassa HOM05D005071 ORTHO05D006069 9.1e-24 113.6 75 68.0
FAN18G3456 Fragaria x ananassa HOM05D005071 ORTHO05D006069 1.2e-23 113.2 74 67.6
CDE05G0597 Ceratophyllum demersum HOM05D005071 ORTHO05D006069 2.7e-23 112.1 75 60.0
AUR62038575 Chenopodium quinoa HOM05D005071 ORTHO05D006069 2.7e-23 112.1 75 60.0
Oeu038408.4 Olea europaea HOM05D005071 ORTHO05D006069 2.7e-23 112.1 75 60.0
ECA232G0859 Erigeron canadensis HOM05D005071 ORTHO05D006069 3.5e-23 111.7 73 64.4
PSO063G6091 Papaver somniferum HOM05D005071 ORTHO05D006069 4.5e-23 111.3 93 57.0
PSO782G2673 Papaver somniferum HOM05D005071 ORTHO05D006069 1.7e-22 109.4 93 55.9
Sc24g0002670 Simmondsia chinensis HOM05D005071 ORTHO05D006069 3.8e-22 108.2 75 62.7
Migut.O00239 Erythranthe guttata HOM05D005071 ORTHO05D006069 8.5e-22 107.1 75 57.3
Actinidia06302 Actinidia chinensis HOM05D005071 ORTHO05D006069 1.1e-21 106.7 72 65.3
HPP92_009318 Vanilla planifolia HOM05D005071 ORTHO05D006069 1.1e-21 106.7 75 62.7
Rhsim08G0124200 Rhododendron simsii HOM05D005071 ORTHO05D006069 1.5e-21 106.3 75 62.7
SalBow5G4817 Salvia bowleyana HOM05D005071 ORTHO05D006069 1.5e-21 106.3 65 67.7
Sc24g0002660 Simmondsia chinensis HOM05D005071 ORTHO05D006069 1.5e-21 106.3 75 62.7
TWI81G0721 Tripterygium wilfordii HOM05D005071 ORTHO05D006069 3.2e-21 105.1 64 70.3
SEGI_13462 Sequoiadendron giganteum HOM05D005071 ORTHO05D006069 5.5e-21 104.4 75 58.7
Sed0017671 Sechium edule HOM05D005071 ORTHO05D006069 9.4e-21 103.6 62 71.0
CSS0029252 Camellia sinensis var. sinensis HOM05D005071 ORTHO05D006069 2.6e-18 95.5 54 72.2
Pp3c15_20550 Physcomitrium patens HOM05D005071 ORTHO05D006069 3.7e-17 91.7 97 48.5
SalBow5G0201 Salvia bowleyana HOM05D005071 ORTHO05D006069 2.4e-16 89.0 60 61.7
Aqoxy3G04132 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 1.6e-15 86.3 69 52.2
CDE11G0073 Ceratophyllum demersum HOM05D005071 ORTHO05D006069 1.6e-15 86.3 59 57.6
Mapoly0080s0004 Marchantia polymorpha HOM05D005071 ORTHO05D006069 7.2e-13 77.4 58 58.6
SMO364G0181 Selaginella moellendorffii HOM05D005071 ORTHO05D006069 1.6e-12 76.3 60 53.3
Cre07.g319320 Chlamydomonas reinhardtii HOM05D005071 ORTHO05D006069 6.3e-09 64.3 52 48.1
Cre07.g319400 Chlamydomonas reinhardtii HOM05D005071 ORTHO05D006069 6.3e-09 64.3 52 48.1
MCO03G464 Micromonas commoda HOM05D005071 ORTHO05D006069 2.4e-08 62.4 48 47.9
FvH4_5g18020 Fragaria vesca HOM05D005071 ORTHO05D006069 1.0e-06 57.0 32 75.0


User provided reference genes

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