Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G055100 Glycine max HOM05D006794 ORTHO05D008322 2.2e-81 305.8 187 100.0
Phvul.002G330800 Phaseolus vulgaris HOM05D006794 ORTHO05D008322 2.0e-69 266.2 187 85.6
VMungo0251G1205 Vigna mungo HOM05D006794 ORTHO05D008322 2.6e-69 265.8 187 89.8
Lalb_Chr16g0386961 Lupinus albus HOM05D006794 ORTHO05D008322 1.5e-56 223.4 186 66.1
arahy.Tifrunner.gnm1.ann1.KQ26AL Arachis hypogaea HOM05D006794 ORTHO05D008322 3.6e-55 218.8 187 64.2
arahy.Tifrunner.gnm1.ann1.P2R0G6 Arachis hypogaea HOM05D006794 ORTHO05D008322 3.6e-55 218.8 187 64.2
Lj2g0023485 Lotus japonicus HOM05D006794 ORTHO05D008322 2.6e-53 212.6 195 77.4
VMungo0464G2014 Vigna mungo HOM05D006794 ORTHO05D008322 4.4e-53 211.8 194 78.9
Phvul.004G150000 Phaseolus vulgaris HOM05D006794 ORTHO05D008322 5.7e-53 211.5 194 78.9
Glyma.09G174700 Glycine max HOM05D006794 ORTHO05D008322 2.2e-52 209.5 192 78.1
arahy.Tifrunner.gnm1.ann1.PNUX28 Arachis hypogaea HOM05D006794 ORTHO05D008322 1.8e-51 206.5 199 75.4
arahy.Tifrunner.gnm1.ann1.AT27RE Arachis hypogaea HOM05D006794 ORTHO05D008322 2.4e-51 206.1 199 75.4
Medtr6g069830 Medicago truncatula HOM05D006794 ORTHO05D008322 5.4e-51 204.9 193 72.0
Duzib068G0617 Durio zibethinus HOM05D006794 ORTHO05D008322 7.0e-51 204.5 202 58.4
Lalb_Chr22g0353521 Lupinus albus HOM05D006794 ORTHO05D008322 1.2e-50 203.8 188 73.4
Thecc.03G058000 Theobroma cacao HOM05D006794 ORTHO05D008322 7.7e-50 201.1 203 57.6
ClCG04G010570 Citrullus lanatus HOM05D006794 ORTHO05D008322 1.0e-49 200.7 190 67.9
TPR.G8635 Trifolium pratense HOM05D006794 ORTHO05D008322 1.7e-49 199.9 192 72.9
CiPaw.15G144200 Carya illinoinensis HOM05D006794 ORTHO05D008322 6.5e-49 198.0 199 59.3
Duzib084G0148 Durio zibethinus HOM05D006794 ORTHO05D008322 8.5e-49 197.6 203 58.6
CiPaw.16G095900 Carya illinoinensis HOM05D006794 ORTHO05D008322 2.5e-48 196.1 195 57.4
Dinv08202 Davidia involucrata HOM05D006794 ORTHO05D008322 2.5e-48 196.1 199 71.9
QL10p030576 Quercus lobata HOM05D006794 ORTHO05D008322 5.5e-48 194.9 195 60.5
Psat4g000080 Pisum sativum HOM05D006794 ORTHO05D008322 1.6e-47 193.4 189 58.7
Cfa021396 Carpinus fangiana HOM05D006794 ORTHO05D008322 6.1e-47 191.4 201 64.2
RcHm_v2.0_Chr7g0178231 Rosa chinensis HOM05D006794 ORTHO05D008322 6.1e-47 191.4 191 72.8
FAN13G2800 Fragaria x ananassa HOM05D006794 ORTHO05D008322 2.3e-46 189.5 191 65.4
MD14G1237200 Malus domestica HOM05D006794 ORTHO05D008322 5.2e-46 188.3 201 69.2
Sed0024550 Sechium edule HOM05D006794 ORTHO05D008322 5.2e-46 188.3 193 69.9
FvH4_5g17460 Fragaria vesca HOM05D006794 ORTHO05D008322 6.8e-46 188.0 191 71.7
FAN18G3906 Fragaria x ananassa HOM05D006794 ORTHO05D008322 6.8e-46 188.0 191 71.7
Cpa.g.sc3.383 Carica papaya HOM05D006794 ORTHO05D008322 1.5e-45 186.8 198 65.2
Prupe.5G234500 Prunus persica HOM05D006794 ORTHO05D008322 1.5e-45 186.8 203 70.9
MD06G1228000 Malus domestica HOM05D006794 ORTHO05D008322 3.4e-45 185.7 203 70.0
GSVIVG01008463001 Vitis vinifera HOM05D006794 ORTHO05D008322 3.4e-45 185.7 192 57.3
PGR083G0475 Punica granatum HOM05D006794 ORTHO05D008322 7.5e-45 184.5 196 69.9
CSS0048798 Camellia sinensis var. sinensis HOM05D006794 ORTHO05D008322 9.8e-45 184.1 198 69.2
Hma1.2p1_0163F.1_g073020 Hydrangea macrophylla HOM05D006794 ORTHO05D008322 1.3e-44 183.7 192 68.8
Gorai.008G290400 Gossypium raimondii HOM05D006794 ORTHO05D008322 2.2e-44 183.0 202 53.5
Sopen03g037580 Solanum pennellii HOM05D006794 ORTHO05D008322 4.9e-44 181.8 198 65.7
Manes.06G005000 Manihot esculenta HOM05D006794 ORTHO05D008322 8.3e-44 181.0 202 62.4
PGSC0003DMG400005675 Solanum tuberosum HOM05D006794 ORTHO05D008322 1.4e-43 180.3 201 66.2
Solyc03g118630.3 Solanum lycopersicum HOM05D006794 ORTHO05D008322 1.8e-43 179.9 198 62.6
Sed0017400 Sechium edule HOM05D000034 ORTHO05D000037 3.1e-43 179.1 187 68.4
CANSAT80G2635 Cannabis sativa HOM05D006794 ORTHO05D008322 4.1e-43 178.7 210 64.3
TWI81G0550 Tripterygium wilfordii HOM05D006794 ORTHO05D008322 7.0e-43 177.9 201 63.7
Cc04_g06140 Coffea canephora HOM05D006794 ORTHO05D008322 1.6e-42 176.8 201 64.2
Potri.012G045700 Populus trichocarpa HOM05D006794 ORTHO05D008322 1.6e-42 176.8 202 69.3
CANSAT80G0659 Cannabis sativa HOM05D006794 ORTHO05D008322 2.0e-42 176.4 212 64.6
Potri.015G036900 Populus trichocarpa HOM05D006794 ORTHO05D008322 1.0e-41 174.1 202 65.8
FAN08G0189 Fragaria x ananassa HOM05D006794 ORTHO05D008322 2.9e-41 172.6 191 69.1
FAN04G0930 Fragaria x ananassa HOM05D006794 ORTHO05D008322 3.8e-41 172.2 191 69.1
Nitab4.5_0001264g0020 Nicotiana tabacum HOM05D006794 ORTHO05D008322 1.9e-40 169.9 205 63.4
Sabra15G0031400 Salix brachista HOM05D006794 ORTHO05D008322 1.9e-40 169.9 201 57.7
TAR622G0128 Trochodendron aralioides HOM05D006794 ORTHO05D008322 2.8e-39 166.0 194 64.9
Nn4g24277 Nelumbo nucifera HOM05D006794 ORTHO05D008322 8.9e-38 161.0 210 56.2
Eucgr.B00988 Eucalyptus grandis HOM05D006794 ORTHO05D008322 2.6e-37 159.5 199 63.8
Atru.chr9.1672 Acer truncatum HOM05D006794 ORTHO05D008322 6.4e-36 154.8 205 56.6
MD01G1007300 Malus domestica HOM05D006794 ORTHO05D008322 1.4e-35 153.7 191 56.0
Lj4g0014763 Lotus japonicus HOM05D006794 ORTHO05D008322 1.8e-35 153.3 189 51.9
THA.LOC104825595 Tarenaya hassleriana HOM05D006794 ORTHO05D008322 4.1e-35 152.1 203 49.8
Oeu046160.1 Olea europaea HOM05D006794 ORTHO05D008322 2.0e-34 149.8 198 50.5
Lsat_1_v5_gn_5_175480 Lactuca sativa HOM05D006794 ORTHO05D008322 1.2e-31 140.6 208 54.3
Migut.D01320 Erythranthe guttata HOM05D006794 ORTHO05D008322 2.8e-31 139.4 179 49.7
Glyma.07G103100 Glycine max HOM05D006794 ORTHO05D008322 2.8e-31 139.4 148 75.7
PSO210G4985 Papaver somniferum HOM05D006794 ORTHO05D008322 2.8e-31 139.4 216 44.4
PSO832G1236 Papaver somniferum HOM05D006794 ORTHO05D008322 6.2e-31 138.3 216 44.4
HanXRQChr01g0012541 Helianthus annuus HOM05D006794 ORTHO05D008322 2.3e-30 136.3 205 60.0
MELO3C002138.2 Cucumis melo HOM05D006794 ORTHO05D008322 6.8e-30 134.8 147 66.0
Thhalv10021515m.g Eutrema salsugineum HOM05D006794 ORTHO05D008322 8.9e-30 134.4 214 59.8
BcaB04g20803 Brassica carinata HOM05D006794 ORTHO05D008322 1.5e-29 133.7 216 56.5
A03p40470 Brassica napus HOM05D006794 ORTHO05D008322 1.5e-29 133.7 212 51.4
Sp3g16080 Schrenkiella parvula HOM05D006794 ORTHO05D008322 1.5e-29 133.7 214 47.2
BcaC01g03720 Brassica carinata HOM05D006794 ORTHO05D008322 2.0e-29 133.3 211 53.1
COL.COLO4_04996 Corchorus olitorius HOM05D006794 ORTHO05D008322 2.0e-29 133.3 161 67.7
C03p49310 Brassica napus HOM05D006794 ORTHO05D008322 3.4e-29 132.5 211 53.1
AL3G31120 Arabidopsis lyrata HOM05D006794 ORTHO05D008322 5.8e-29 131.7 207 59.4
Psat1g031080 Pisum sativum HOM05D006794 ORTHO05D008322 5.8e-29 131.7 151 65.6
Ca_17183_v3 Cicer arietinum L. HOM05D006794 ORTHO05D008322 7.5e-29 131.3 90 73.3
BcaC09g48759 Brassica carinata HOM05D006794 ORTHO05D008322 9.8e-29 131.0 215 45.6
C01p46200 Brassica napus HOM05D006794 ORTHO05D008322 9.8e-29 131.0 215 45.6
BolC1t04582H Brassica oleracea HOM05D006794 ORTHO05D008322 9.8e-29 131.0 215 45.6
BraA01t03709Z Brassica rapa HOM05D006794 ORTHO05D008322 9.8e-29 131.0 216 55.6
Ca_25344_v3 Cicer arietinum L. HOM05D006794 ORTHO05D008322 9.8e-29 131.0 147 68.0
BcaB04g18974 Brassica carinata HOM05D006794 ORTHO05D008322 1.3e-28 130.6 211 53.6
DCAR_013026 Daucus carota HOM05D006794 ORTHO05D008322 1.9e-27 126.7 191 58.6
MBI19_g22477_MAGBIO Magnolia biondii HOM05D006794 ORTHO05D008322 1.9e-27 126.7 186 53.8
Haze_18880 Corylus avellana HOM05D006794 ORTHO05D008322 2.4e-27 126.3 157 56.7
Rhsim12G0138200 Rhododendron simsii HOM05D006919 ORTHO05D008705 3.2e-27 125.9 166 67.5
A01p36460 Brassica napus HOM05D006794 ORTHO05D008322 1.6e-26 123.6 219 55.3
Carub.0003s1768 Capsella rubella HOM05D006794 ORTHO05D008322 6.0e-26 121.7 214 53.7
Nitab4.5_0010223g0030 Nicotiana tabacum HOM05D006794 ORTHO05D008322 7.8e-26 121.3 207 54.6
vmacro16409 Vaccinium macrocarpon HOM05D006794 ORTHO05D008322 1.6e-23 113.6 174 58.0
Gohir.A12G269600 Gossypium hirsutum HOM05D006794 ORTHO05D008322 1.8e-22 110.2 158 44.3
Gohir.D12G270100 Gossypium hirsutum HOM05D006794 ORTHO05D008322 2.3e-22 109.8 158 44.3
ECA248G0187 Erigeron canadensis HOM05D006794 ORTHO05D008322 6.8e-22 108.2 205 53.2
HPP92_008000 Vanilla planifolia HOM05D006794 ORTHO05D008322 2.6e-21 106.3 185 51.9
SalBow1G0629 Salvia bowleyana HOM05D006794 ORTHO05D008322 2.2e-20 103.2 155 59.4
CARHR093280 Cardamine hirsuta HOM05D006794 ORTHO05D008322 1.1e-19 100.9 188 55.3
Sabra12G0031800 Salix brachista HOM05D006794 ORTHO05D008322 5.4e-19 98.6 157 61.8
Peaxi162Scf00314g00315 Petunia axillaris HOM05D006794 ORTHO05D008322 3.0e-17 92.8 96 54.2
CANSAT64G0030 Cannabis sativa HOM05D006794 ORTHO05D008322 6.6e-17 91.7 153 50.3
Aa31LG8G4820 Aethionema arabicum HOM05D006794 ORTHO05D008322 1.5e-16 90.5 178 44.9
AT3G17950 Arabidopsis thaliana HOM05D006794 ORTHO05D008322 6.2e-15 85.1 182 54.9
C05p26280 Brassica napus HOM05D006794 ORTHO05D008322 6.8e-14 81.6 86 57.0
Ciclev10009814m.g Citrus clementina HOM05D006794 ORTHO05D008322 4.4e-13 79.0 153 49.7
CDE07G1050 Ceratophyllum demersum HOM05D006794 ORTHO05D008322 4.9e-12 75.5 56 76.8
VMungo0251G0268 Vigna mungo HOM05D006794 ORTHO05D008322 4.9e-12 75.5 58 65.5
VMungo1127G0591 Vigna mungo HOM05D001475 ORTHO05D001525 6.4e-12 75.1 58 65.5
VMungo0331G1645 Vigna mungo HOM05D006794 ORTHO05D008322 8.4e-12 74.7 58 63.8
CDE05G2986 Ceratophyllum demersum HOM05D006794 ORTHO05D008322 1.1e-11 74.3 145 40.0
Oeu004474.1 Olea europaea HOM05D006794 ORTHO05D008322 7.1e-11 71.6 56 73.2
Os02g0733400 Oryza sativa ssp. japonica HOM05D006794 ORTHO05D008322 1.6e-10 70.5 190 47.4
Haze_13383 Corylus avellana HOM05D006794 ORTHO05D008322 6.0e-10 68.6 83 54.2
HanXRQChr08g0234711 Helianthus annuus HOM05D003527 ORTHO05D004099 6.0e-10 68.6 148 50.0
Nn2g15270 Nelumbo nucifera HOM05D006794 ORTHO05D008322 1.0e-09 67.8 117 40.2
SGA_v2.0_scaffold172G39018 Striga asiatica HOM05D006794 ORTHO05D008322 3.0e-09 66.2 132 40.2
Os06g0256800 Oryza sativa ssp. japonica HOM05D006794 ORTHO05D008322 8.6e-09 64.7 202 42.1
Nn2g10383 Nelumbo nucifera HOM05D003527 ORTHO05D004099 1.5e-08 63.9 192 33.9
Prupe.6G079000 Prunus persica HOM05D003527 ORTHO05D004099 1.5e-08 63.9 187 32.1
Lsat_1_v5_gn_9_23221 Lactuca sativa HOM05D003527 ORTHO05D004099 2.5e-08 63.2 148 35.1
ATR0559G115 Amborella trichopoda HOM05D003527 ORTHO05D004099 3.3e-08 62.8 175 33.1
Ciclev10029234m.g Citrus clementina HOM05D003527 ORTHO05D004099 3.3e-08 62.8 158 34.8
QL01p032299 Quercus lobata HOM05D003527 ORTHO05D004099 3.3e-08 62.8 161 34.8
HanXRQChr05g0134511 Helianthus annuus HOM05D003527 ORTHO05D004099 4.3e-08 62.4 150 34.0
Aqoxy2G02103 Aquilegia oxysepala HOM05D003527 ORTHO05D004099 5.6e-08 62.0 183 33.3
Cpa.g.sc81.162 Carica papaya HOM05D003527 ORTHO05D004099 5.6e-08 62.0 148 33.1
Eucgr.J02057 Eucalyptus grandis HOM05D003527 ORTHO05D004099 5.6e-08 62.0 182 32.4
Potri.001G238900 Populus trichocarpa HOM05D003527 ORTHO05D004099 7.3e-08 61.6 192 37.5
Rhsim13G0083400 Rhododendron simsii HOM05D003527 ORTHO05D004099 7.3e-08 61.6 157 35.0
Actinidia23946 Actinidia chinensis HOM05D003527 ORTHO05D004099 9.6e-08 61.2 182 32.4
SEGI_38129 Sequoiadendron giganteum HOM05D003527 ORTHO05D004099 9.6e-08 61.2 161 36.0
Zm00001eb190230 Zea mays HOM05D006794 ORTHO05D008322 1.2e-07 60.8 193 38.9
COL.COLO4_14818 Corchorus olitorius HOM05D003527 ORTHO05D004099 1.6e-07 60.5 187 30.5
Haze_24084 Corylus avellana HOM05D003527 ORTHO05D004099 2.1e-07 60.1 153 34.0
Migut.J00336 Erythranthe guttata HOM05D003527 ORTHO05D004099 2.8e-07 59.7 142 36.6
Nitab4.5_0001800g0180 Nicotiana tabacum HOM05D003527 ORTHO05D004099 2.8e-07 59.7 150 34.7
FAN25G2547 Fragaria x ananassa HOM05D003527 ORTHO05D004099 3.6e-07 59.3 188 31.4
MD03G1096000 Malus domestica HOM05D003527 ORTHO05D004099 4.7e-07 58.9 165 33.3
MD11G1110500 Malus domestica HOM05D003527 ORTHO05D004099 4.7e-07 58.9 151 33.8
TWI79G0031 Tripterygium wilfordii HOM05D003527 ORTHO05D004099 4.7e-07 58.9 153 31.4
ECA247G3528 Erigeron canadensis HOM05D003527 ORTHO05D004099 6.2e-07 58.5 149 34.9
Hund04968 Selenicereus undatus HOM05D003527 ORTHO05D004099 6.2e-07 58.5 157 33.1
FAN16G0579 Fragaria x ananassa HOM05D003527 ORTHO05D004099 8.1e-07 58.2 177 31.1
Gohir.A07G097950 Gossypium hirsutum HOM05D003527 ORTHO05D004099 8.1e-07 58.2 187 31.0
RcHm_v2.0_Chr5g0064221 Rosa chinensis HOM05D003527 ORTHO05D004099 8.1e-07 58.2 175 34.9
CANSAT35G0216 Cannabis sativa HOM05D003527 ORTHO05D004099 1.1e-06 57.8 36 80.6
AUR62009585 Chenopodium quinoa HOM05D003527 ORTHO05D004099 1.4e-06 57.4 169 31.4
Lj2A96T67 Lonicera japonica HOM05D003527 ORTHO05D004099 1.4e-06 57.4 150 34.0
MBI05_g30238_MAGBIO Magnolia biondii HOM05D003527 ORTHO05D004099 1.4e-06 57.4 151 30.5
Sc12g0001550 Simmondsia chinensis HOM05D003527 ORTHO05D004099 1.4e-06 57.4 169 32.5
CAN.G327.10 Capsicum annuum HOM05D003527 ORTHO05D004099 1.8e-06 57.0 139 32.4
Ah.08g219410 Amaranthus hybridus HOM05D003527 ORTHO05D004099 2.4e-06 56.6 35 82.9
EL10Ac7g16007 Beta vulgaris HOM05D003527 ORTHO05D004099 2.4e-06 56.6 35 82.9
ECA236G2982 Erigeron canadensis HOM05D003527 ORTHO05D004099 2.4e-06 56.6 151 34.4
Manes.04G034300 Manihot esculenta HOM05D003527 ORTHO05D004099 2.4e-06 56.6 35 82.9
Oeu024354.1 Olea europaea HOM05D003527 ORTHO05D004099 2.4e-06 56.6 35 80.0
QL07p048124 Quercus lobata HOM05D003527 ORTHO05D004099 2.4e-06 56.6 35 80.0
Duzib128G0537 Durio zibethinus HOM05D003527 ORTHO05D004099 3.1e-06 56.2 36 75.0
Gorai.001G110200 Gossypium raimondii HOM05D003527 ORTHO05D004099 3.1e-06 56.2 35 80.0
Solyc11g066010.2 Solanum lycopersicum HOM05D003527 ORTHO05D004099 3.1e-06 56.2 138 31.9
Sopen11g025750 Solanum pennellii HOM05D003527 ORTHO05D004099 3.1e-06 56.2 138 31.9
CiPaw.09G191600 Carya illinoinensis HOM05D003527 ORTHO05D004099 5.2e-06 55.5 35 80.0
Duzib168G1608 Durio zibethinus HOM05D003527 ORTHO05D004099 5.2e-06 55.5 35 80.0
Gohir.D07G102300 Gossypium hirsutum HOM05D003527 ORTHO05D004099 5.2e-06 55.5 35 80.0
PGSC0003DMG400000395 Solanum tuberosum HOM05D003527 ORTHO05D004099 5.2e-06 55.5 148 31.8
ATR0680G191 Amborella trichopoda HOM05D003527 ORTHO05D004099 6.8e-06 55.1 190 30.0
ATR0564G523 Amborella trichopoda HOM05D006794 ORTHO05D008322 8.9e-06 54.7 168 38.7
AUR62001798 Chenopodium quinoa HOM05D003527 ORTHO05D004099 8.9e-06 54.7 165 32.1
FAN21G2526 Fragaria x ananassa HOM05D003527 ORTHO05D004099 8.9e-06 54.7 35 77.1
Gohir.A05G096000 Gossypium hirsutum HOM05D003527 ORTHO05D004099 8.9e-06 54.7 36 75.0
Gohir.D05G096200 Gossypium hirsutum HOM05D003527 ORTHO05D004099 8.9e-06 54.7 36 75.0
Gorai.009G099700 Gossypium raimondii HOM05D003527 ORTHO05D004099 8.9e-06 54.7 36 75.0
Lsat_1_v5_gn_8_75920 Lactuca sativa HOM05D003527 ORTHO05D004099 8.9e-06 54.7 177 32.8
Thecc.05G040900 Theobroma cacao HOM05D003527 ORTHO05D004099 8.9e-06 54.7 36 75.0
Thecc.09G322900 Theobroma cacao HOM05D003527 ORTHO05D004099 8.9e-06 54.7 35 80.0
TAR633G1470 Trochodendron aralioides HOM05D003527 ORTHO05D004099 8.9e-06 54.7 156 33.3
TAR636G1653 Trochodendron aralioides HOM05D003527 ORTHO05D004099 8.9e-06 54.7 165 30.3
VMungo1080G1739 Vigna mungo HOM05D003527 ORTHO05D004099 8.9e-06 54.7 153 30.1


User provided reference genes

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