Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G053933 Glycine max HOM05D007242 ORTHO05D009089 3.5e-138 495.0 253 100.0
Glyma.05G246000 Glycine max HOM05D007242 ORTHO05D009089 7.6e-125 450.7 253 90.9
Phvul.002G329700 Phaseolus vulgaris HOM05D007242 ORTHO05D009089 8.7e-113 410.6 253 83.0
VMungo0251G2211 Vigna mungo HOM05D007242 ORTHO05D009089 1.3e-108 396.7 251 80.1
TPR.G15492 Trifolium pratense HOM05D007242 ORTHO05D009089 4.6e-98 361.7 253 73.5
Psat4g001600 Pisum sativum HOM05D007242 ORTHO05D009089 1.2e-93 347.1 252 70.2
Lalb_Chr05g0221691 Lupinus albus HOM05D007242 ORTHO05D009089 1.5e-93 346.7 253 70.4
Medtr8g107230 Medicago truncatula HOM05D007242 ORTHO05D009089 7.6e-93 344.4 253 70.0
arahy.Tifrunner.gnm1.ann1.YZC3AP Arachis hypogaea HOM05D007242 ORTHO05D009089 1.2e-90 337.0 243 72.0
arahy.Tifrunner.gnm1.ann1.79NCEV Arachis hypogaea HOM05D007242 ORTHO05D009089 1.0e-89 334.0 243 72.0
QL12p024714 Quercus lobata HOM05D007242 ORTHO05D009089 1.7e-68 263.5 250 56.8
Haze_18840 Corylus avellana HOM05D007242 ORTHO05D009089 5.0e-68 261.9 244 56.6
Duzib264G0124 Durio zibethinus HOM05D007242 ORTHO05D009089 4.2e-67 258.8 236 56.8
Thecc.01G042000 Theobroma cacao HOM05D007242 ORTHO05D009089 9.4e-67 257.7 236 57.6
Ciclev10027297m.g Citrus clementina HOM05D007242 ORTHO05D009089 1.2e-66 257.3 246 56.5
Atru.chr3.510 Acer truncatum HOM05D007242 ORTHO05D009089 4.7e-66 255.4 243 56.0
Prupe.7G148400 Prunus persica HOM05D007242 ORTHO05D009089 1.8e-65 253.4 236 57.6
MD15G1269300 Malus domestica HOM05D007242 ORTHO05D009089 5.2e-65 251.9 248 55.6
Gorai.007G051500 Gossypium raimondii HOM05D007242 ORTHO05D009089 1.7e-63 246.9 232 56.5
Gohir.A11G044400 Gossypium hirsutum HOM05D007242 ORTHO05D009089 2.2e-63 246.5 232 56.9
Potri.005G127500 Populus trichocarpa HOM05D007242 ORTHO05D009089 2.2e-63 246.5 244 54.5
COL.COLO4_04840 Corchorus olitorius HOM05D007242 ORTHO05D009089 2.8e-63 246.1 228 57.0
Manes.13G136000 Manihot esculenta HOM05D007242 ORTHO05D009089 3.1e-62 242.7 244 54.9
Sabra05G0104300 Salix brachista HOM05D007242 ORTHO05D009089 5.3e-62 241.9 251 53.8
Rhsim08G0035000 Rhododendron simsii HOM05D007242 ORTHO05D009089 7.0e-62 241.5 251 51.0
CiPaw.15G142800 Carya illinoinensis HOM05D007242 ORTHO05D009089 2.0e-61 240.0 245 52.7
GSVIVG01019029001 Vitis vinifera HOM05D007242 ORTHO05D009089 2.9e-60 236.1 248 52.0
TWI53G0783 Tripterygium wilfordii HOM05D007242 ORTHO05D009089 6.1e-58 228.4 226 54.0
TAR381G0682 Trochodendron aralioides HOM05D007242 ORTHO05D009089 1.8e-57 226.9 245 50.6
CANSAT35G0651 Cannabis sativa HOM05D007242 ORTHO05D009089 1.5e-56 223.8 239 51.0
Lj2A917T62 Lonicera japonica HOM05D007242 ORTHO05D009089 1.5e-56 223.8 245 49.0
Dinv26797 Davidia involucrata HOM05D007242 ORTHO05D009089 2.6e-56 223.0 229 52.8
Hma1.2p1_0939F.1_g239400 Hydrangea macrophylla HOM05D007242 ORTHO05D009089 2.6e-56 223.0 229 52.8
Lj2C896T5 Lonicera japonica HOM05D007242 ORTHO05D009089 9.8e-56 221.1 245 48.2
CSS0024550 Camellia sinensis var. sinensis HOM05D007242 ORTHO05D009089 3.7e-55 219.2 237 48.9
Eucgr.B03084 Eucalyptus grandis HOM05D007242 ORTHO05D009089 4.8e-55 218.8 252 47.6
Hma1.2p1_0268F.1_g107710 Hydrangea macrophylla HOM05D007242 ORTHO05D009089 1.1e-54 217.6 246 49.2
vmacro23494 Vaccinium macrocarpon HOM05D007242 ORTHO05D009089 5.4e-54 215.3 219 52.1
DCAR_026265 Daucus carota HOM05D007242 ORTHO05D009089 2.9e-52 209.5 241 48.5
ClCG02G013250 Citrullus lanatus HOM05D007242 ORTHO05D009089 3.8e-52 209.1 239 47.7
SGA_v2.0_scaffold204G41644 Striga asiatica HOM05D007242 ORTHO05D009089 5.0e-52 208.8 242 49.6
CsaV3_2G017430 Cucumis sativus L. HOM05D007242 ORTHO05D009089 4.7e-50 202.2 227 47.1
MELO3C020940.2 Cucumis melo HOM05D007242 ORTHO05D009089 1.8e-49 200.3 227 46.3
HanXRQChr14g0431951 Helianthus annuus HOM05D007242 ORTHO05D009089 3.4e-48 196.1 226 46.5
Sed0022143 Sechium edule HOM05D007242 ORTHO05D009089 5.7e-48 195.3 227 45.8
Oeu038867.1 Olea europaea HOM05D007242 ORTHO05D009089 7.5e-48 194.9 232 46.6
MSTRG.2935 Avicennia marina HOM05D007242 ORTHO05D009089 6.3e-47 191.8 229 47.6
PGR102G1679 Punica granatum HOM05D007242 ORTHO05D009089 6.3e-47 191.8 236 45.3
Lsat_1_v5_gn_2_38041 Lactuca sativa HOM05D007242 ORTHO05D009089 1.1e-46 191.0 231 45.5
Peaxi162Scf00075g00618 Petunia axillaris HOM05D007242 ORTHO05D009089 1.4e-46 190.7 240 44.6
Nitab4.5_0010783g0030 Nicotiana tabacum HOM05D007242 ORTHO05D009089 1.8e-46 190.3 243 44.0
THA.LOC104819810 Tarenaya hassleriana HOM05D007242 ORTHO05D009089 2.4e-46 189.9 247 46.2
Migut.H00525 Erythranthe guttata HOM05D007242 ORTHO05D009089 4.1e-46 189.1 225 48.0
CAN.G1204.3 Capsicum annuum HOM05D007242 ORTHO05D009089 7.0e-46 188.3 225 44.4
Sopen01g004000 Solanum pennellii HOM05D007242 ORTHO05D009089 9.2e-46 188.0 225 45.3
Cc07_g05120 Coffea canephora HOM05D007242 ORTHO05D009089 1.6e-45 187.2 236 46.2
MBI16_g13145_MAGBIO Magnolia biondii HOM05D007242 ORTHO05D009089 1.6e-45 187.2 240 42.5
Solyc01g008480.4 Solanum lycopersicum HOM05D007242 ORTHO05D009089 3.5e-45 186.0 225 45.3
Nn1g05103 Nelumbo nucifera HOM05D007242 ORTHO05D009089 3.8e-44 182.6 245 44.5
Peaxi162Scf00075g00617 Petunia axillaris HOM05D007242 ORTHO05D009089 5.0e-44 182.2 234 43.6
ECA246G4655 Erigeron canadensis HOM05D007242 ORTHO05D009089 1.1e-43 181.0 226 44.2
AT2G01390 Arabidopsis thaliana HOM05D007242 ORTHO05D009089 1.5e-43 180.6 249 41.8
Thhalv10000833m.g Eutrema salsugineum HOM05D007242 ORTHO05D009089 1.5e-43 180.6 246 42.3
A06p44470 Brassica napus HOM05D007242 ORTHO05D009089 5.6e-43 178.7 238 41.2
BraA06t27320Z Brassica rapa HOM05D007242 ORTHO05D009089 5.6e-43 178.7 238 41.2
Nitab4.5_0008184g0020 Nicotiana tabacum HOM05D007242 ORTHO05D009089 9.5e-43 177.9 225 43.1
CARHR143900 Cardamine hirsuta HOM05D007242 ORTHO05D009089 4.7e-42 175.6 222 45.0
BcaC06g34194 Brassica carinata HOM05D007242 ORTHO05D009089 6.1e-42 175.3 221 42.5
C07p31760 Brassica napus HOM05D007242 ORTHO05D009089 6.1e-42 175.3 221 42.5
BolC7t43717H Brassica oleracea HOM05D007242 ORTHO05D009089 6.1e-42 175.3 221 42.5
HanXRQChr07g0193491 Helianthus annuus HOM05D007242 ORTHO05D009089 6.1e-42 175.3 223 45.3
Aqoxy6G01016 Aquilegia oxysepala HOM05D007242 ORTHO05D009089 3.0e-41 172.9 244 41.0
AL5G10350 Arabidopsis lyrata HOM05D007242 ORTHO05D009089 5.2e-41 172.2 248 41.1
BcaC06g31314 Brassica carinata HOM05D007242 ORTHO05D009089 6.8e-41 171.8 218 43.1
Carub.0005s0035 Capsella rubella HOM05D007242 ORTHO05D009089 1.5e-40 170.6 248 39.9
SalBow1G2223 Salvia bowleyana HOM05D007242 ORTHO05D009089 2.0e-40 170.2 179 49.7
Sp2g12820 Schrenkiella parvula HOM05D007242 ORTHO05D009089 2.0e-40 170.2 244 41.0
Aa31LG2G8550 Aethionema arabicum HOM05D007242 ORTHO05D009089 8.3e-39 164.9 223 41.7
A06p37220 Brassica napus HOM05D007242 ORTHO05D009089 2.4e-38 163.3 229 39.7
BraA06t26646Z Brassica rapa HOM05D007242 ORTHO05D009089 2.4e-38 163.3 229 39.7
EL10Ac6g14891 Beta vulgaris HOM05D007242 ORTHO05D009089 1.6e-37 160.6 225 41.3
Hund14133 Selenicereus undatus HOM05D007242 ORTHO05D009089 5.0e-36 155.6 226 40.7
Os10g0358700 Oryza sativa ssp. japonica HOM05D007242 ORTHO05D009089 8.6e-36 154.8 219 38.8
MD02G1154900 Malus domestica HOM05D007242 ORTHO05D009089 5.6e-35 152.1 133 61.7
ATR0767G228 Amborella trichopoda HOM05D007242 ORTHO05D009089 5.2e-33 145.6 225 37.8
AUR62008019 Chenopodium quinoa HOM05D007242 ORTHO05D009089 5.8e-32 142.1 250 37.6
Zm00001eb288630 Zea mays HOM05D007242 ORTHO05D009089 9.2e-30 134.8 223 34.5
vmacro22084 Vaccinium macrocarpon HOM05D007242 ORTHO05D009089 2.0e-29 133.7 168 44.0
AT2G01360 Arabidopsis thaliana HOM05D007242 ORTHO05D009089 2.6e-24 116.7 168 39.9
AUR62003202 Chenopodium quinoa HOM05D007242 ORTHO05D009089 4.6e-21 105.9 163 40.5
HPP92_006079 Vanilla planifolia HOM05D007242 ORTHO05D009089 6.0e-21 105.5 111 43.2
Lj4C132T2 Lonicera japonica HOM05D007242 ORTHO05D009089 1.2e-13 81.3 93 41.9
EL10Ac4g08697 Beta vulgaris HOM05D007242 ORTHO05D009089 6.0e-13 79.0 97 40.2
BcaC06g34182 Brassica carinata HOM05D007242 ORTHO05D009089 2.3e-12 77.0 110 40.9
Gohir.D11G047900 Gossypium hirsutum HOM05D007242 ORTHO05D009089 3.0e-12 76.6 64 54.7
BcaC06g34191 Brassica carinata HOM05D007242 ORTHO05D009089 8.1e-10 68.6 116 39.7
BcaB08g34298 Brassica carinata HOM05D007242 ORTHO05D009089 1.1e-09 68.2 93 41.9


User provided reference genes

Program Settings