Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G053867 Glycine max HOM05D007242 ORTHO05D009089 2.2e-97 359.0 187 100.0
Glyma.05G246000 Glycine max HOM05D007242 ORTHO05D009089 3.2e-56 222.2 131 81.7
VMungo0251G2211 Vigna mungo HOM05D007242 ORTHO05D009089 8.0e-47 191.0 156 64.7
Medtr8g107230 Medicago truncatula HOM05D007242 ORTHO05D009089 4.5e-42 175.3 126 67.5
Phvul.002G329700 Phaseolus vulgaris HOM05D007242 ORTHO05D009089 3.8e-41 172.2 102 79.4
TPR.G15492 Trifolium pratense HOM05D007242 ORTHO05D009089 6.6e-41 171.4 150 58.7
Lalb_Chr05g0221691 Lupinus albus HOM05D007242 ORTHO05D009089 2.5e-40 169.5 144 59.7
Psat4g001600 Pisum sativum HOM05D007242 ORTHO05D009089 4.3e-40 168.7 139 62.6
arahy.Tifrunner.gnm1.ann1.79NCEV Arachis hypogaea HOM05D007242 ORTHO05D009089 1.6e-39 166.8 141 59.6
arahy.Tifrunner.gnm1.ann1.YZC3AP Arachis hypogaea HOM05D007242 ORTHO05D009089 8.0e-39 164.5 97 77.3
TWI53G0783 Tripterygium wilfordii HOM05D007242 ORTHO05D009089 4.9e-36 155.2 127 57.5
Prupe.7G148400 Prunus persica HOM05D007242 ORTHO05D009089 8.3e-36 154.5 126 59.5
THA.LOC104819810 Tarenaya hassleriana HOM05D007242 ORTHO05D009089 8.3e-36 154.5 123 57.7
CANSAT35G0651 Cannabis sativa HOM05D007242 ORTHO05D009089 1.8e-35 153.3 104 68.3
QL12p024714 Quercus lobata HOM05D007242 ORTHO05D009089 2.4e-35 152.9 86 79.1
Manes.13G136000 Manihot esculenta HOM05D007242 ORTHO05D009089 7.0e-35 151.4 112 59.8
TAR381G0682 Trochodendron aralioides HOM05D007242 ORTHO05D009089 9.2e-35 151.0 125 56.8
CiPaw.15G142800 Carya illinoinensis HOM05D007242 ORTHO05D009089 2.7e-34 149.4 122 57.4
Haze_18840 Corylus avellana HOM05D007242 ORTHO05D009089 1.3e-33 147.1 86 72.1
GSVIVG01019029001 Vitis vinifera HOM05D007242 ORTHO05D009089 1.3e-33 147.1 90 70.0
Carub.0005s0035 Capsella rubella HOM05D007242 ORTHO05D009089 1.7e-33 146.7 111 57.7
Lj2A917T62 Lonicera japonica HOM05D007242 ORTHO05D009089 1.7e-33 146.7 119 60.5
DCAR_026265 Daucus carota HOM05D007242 ORTHO05D009089 2.3e-33 146.4 102 64.7
Potri.005G127500 Populus trichocarpa HOM05D007242 ORTHO05D009089 3.0e-33 146.0 108 60.2
Thecc.01G042000 Theobroma cacao HOM05D007242 ORTHO05D009089 3.9e-33 145.6 120 54.2
Eucgr.B03084 Eucalyptus grandis HOM05D007242 ORTHO05D009089 5.0e-33 145.2 85 72.9
Gorai.007G051500 Gossypium raimondii HOM05D007242 ORTHO05D009089 6.6e-33 144.8 90 70.0
Nitab4.5_0010783g0030 Nicotiana tabacum HOM05D007242 ORTHO05D009089 6.6e-33 144.8 106 60.4
Gohir.D11G047900 Gossypium hirsutum HOM05D007242 ORTHO05D009089 8.6e-33 144.4 90 70.0
MD15G1269300 Malus domestica HOM05D007242 ORTHO05D009089 8.6e-33 144.4 114 57.9
Atru.chr3.510 Acer truncatum HOM05D007242 ORTHO05D009089 1.1e-32 144.1 86 70.9
AL5G10350 Arabidopsis lyrata HOM05D007242 ORTHO05D009089 1.1e-32 144.1 122 52.5
CDE07G1297 Ceratophyllum demersum HOM05D007242 ORTHO05D009089 1.5e-32 143.7 121 54.5
Hma1.2p1_0939F.1_g239400 Hydrangea macrophylla HOM05D007242 ORTHO05D009089 1.5e-32 143.7 104 62.5
Oeu038867.1 Olea europaea HOM05D007242 ORTHO05D009089 1.5e-32 143.7 85 70.6
Duzib264G0124 Durio zibethinus HOM05D007242 ORTHO05D009089 1.9e-32 143.3 109 56.9
Aa31LG2G8550 Aethionema arabicum HOM05D007242 ORTHO05D009089 2.5e-32 142.9 118 55.1
Gohir.A11G044400 Gossypium hirsutum HOM05D007242 ORTHO05D009089 2.5e-32 142.9 107 61.7
Rhsim08G0035000 Rhododendron simsii HOM05D007242 ORTHO05D009089 2.5e-32 142.9 123 56.1
MSTRG.2935 Avicennia marina HOM05D007242 ORTHO05D009089 3.3e-32 142.5 109 61.5
BolC7t43717H Brassica oleracea HOM05D007242 ORTHO05D009089 3.3e-32 142.5 119 54.6
Aqoxy6G01016 Aquilegia oxysepala HOM05D007242 ORTHO05D009089 4.3e-32 142.1 100 63.0
BcaC06g34194 Brassica carinata HOM05D007242 ORTHO05D009089 4.3e-32 142.1 115 55.7
C07p31760 Brassica napus HOM05D007242 ORTHO05D009089 4.3e-32 142.1 115 55.7
CARHR143890 Cardamine hirsuta HOM05D007242 ORTHO05D009089 4.3e-32 142.1 96 61.5
Hund14133 Selenicereus undatus HOM05D007242 ORTHO05D009089 5.6e-32 141.7 110 57.3
Cc07_g05120 Coffea canephora HOM05D007242 ORTHO05D009089 7.3e-32 141.4 113 56.6
Thhalv10000833m.g Eutrema salsugineum HOM05D007242 ORTHO05D009089 7.3e-32 141.4 88 64.8
Sabra05G0104300 Salix brachista HOM05D007242 ORTHO05D009089 7.3e-32 141.4 91 64.8
AT2G01390 Arabidopsis thaliana HOM05D007242 ORTHO05D009089 1.2e-31 140.6 121 52.9
BraA06t27320Z Brassica rapa HOM05D007242 ORTHO05D009089 1.2e-31 140.6 90 64.4
COL.COLO4_22144 Corchorus olitorius HOM05D007242 ORTHO05D009089 1.2e-31 140.6 90 66.7
Lj2C896T5 Lonicera japonica HOM05D007242 ORTHO05D009089 1.2e-31 140.6 103 63.1
Nn1g05103 Nelumbo nucifera HOM05D007242 ORTHO05D009089 1.2e-31 140.6 86 66.3
Sp2g12820 Schrenkiella parvula HOM05D007242 ORTHO05D009089 1.2e-31 140.6 88 65.9
Peaxi162Scf00075g00618 Petunia axillaris HOM05D007242 ORTHO05D009089 2.1e-31 139.8 92 65.2
SalBow1G2223 Salvia bowleyana HOM05D007242 ORTHO05D009089 2.1e-31 139.8 103 60.2
Solyc01g008480.4 Solanum lycopersicum HOM05D007242 ORTHO05D009089 3.6e-31 139.0 114 54.4
Sopen01g004000 Solanum pennellii HOM05D007242 ORTHO05D009089 3.6e-31 139.0 114 54.4
SGA_v2.0_scaffold204G41644 Striga asiatica HOM05D007242 ORTHO05D009089 3.6e-31 139.0 137 52.6
BcaC06g31314 Brassica carinata HOM05D007242 ORTHO05D009089 4.7e-31 138.7 86 66.3
A06p44470 Brassica napus HOM05D007242 ORTHO05D009089 4.7e-31 138.7 90 63.3
Sed0022143 Sechium edule HOM05D007242 ORTHO05D009089 4.7e-31 138.7 132 53.0
Ciclev10027297m.g Citrus clementina HOM05D007242 ORTHO05D009089 8.0e-31 137.9 85 69.4
Migut.H00525 Erythranthe guttata HOM05D007242 ORTHO05D009089 1.4e-30 137.1 100 62.0
Hma1.2p1_0268F.1_g107710 Hydrangea macrophylla HOM05D007242 ORTHO05D009089 1.4e-30 137.1 102 61.8
CSS0024550 Camellia sinensis var. sinensis HOM05D007242 ORTHO05D009089 1.8e-30 136.7 111 58.6
MBI16_g13145_MAGBIO Magnolia biondii HOM05D007242 ORTHO05D009089 1.8e-30 136.7 85 68.2
PGR102G1679 Punica granatum HOM05D007242 ORTHO05D009089 3.1e-30 136.0 92 62.0
ATR0767G228 Amborella trichopoda HOM05D007242 ORTHO05D009089 4.0e-30 135.6 86 67.4
CAN.G1204.3 Capsicum annuum HOM05D007242 ORTHO05D009089 5.2e-30 135.2 106 58.5
Lsat_1_v5_gn_2_38041 Lactuca sativa HOM05D007242 ORTHO05D009089 5.2e-30 135.2 113 54.0
vmacro23494 Vaccinium macrocarpon HOM05D007242 ORTHO05D009089 6.8e-30 134.8 108 57.4
HanXRQChr14g0431951 Helianthus annuus HOM05D007242 ORTHO05D009089 8.9e-30 134.4 107 54.2
MELO3C020940.2 Cucumis melo HOM05D007242 ORTHO05D009089 1.2e-29 134.0 111 56.8
Peaxi162Scf00075g00617 Petunia axillaris HOM05D007242 ORTHO05D009089 2.6e-29 132.9 83 67.5
CsaV3_2G017430 Cucumis sativus L. HOM05D007242 ORTHO05D009089 3.4e-29 132.5 111 55.9
EL10Ac6g14891 Beta vulgaris HOM05D007242 ORTHO05D009089 7.5e-29 131.3 90 61.1
AUR62008019 Chenopodium quinoa HOM05D007242 ORTHO05D009089 3.7e-28 129.0 109 55.0
ClCG02G013250 Citrullus lanatus HOM05D007242 ORTHO05D009089 4.9e-28 128.6 111 55.9
Os10g0358700 Oryza sativa ssp. japonica HOM05D007242 ORTHO05D009089 6.8e-14 81.6 88 45.5
Zm00001eb288630 Zea mays HOM05D007242 ORTHO05D009089 1.2e-13 80.9 88 44.3
HanXRQChr07g0193491 Helianthus annuus HOM05D007242 ORTHO05D009089 1.5e-13 80.5 75 49.3
Dinv26797 Davidia involucrata HOM05D007242 ORTHO05D009089 1.4e-11 73.9 40 80.0
MD02G1154900 Malus domestica HOM05D007242 ORTHO05D009089 2.1e-10 70.1 44 70.5
HanXRQChr14g0431911 Helianthus annuus HOM05D007242 ORTHO05D009089 3.5e-10 69.3 107 33.6
Sabra15G0091500 Salix brachista HOM05D004079 ORTHO05D005437 3.5e-10 69.3 114 37.7
Eucgr.K02912 Eucalyptus grandis HOM05D004079 ORTHO05D005437 4.6e-10 68.9 123 33.3
EL10Ac5g10922 Beta vulgaris HOM05D004079 ORTHO05D005437 2.3e-09 66.6 83 42.2
THA.LOC104809214 Tarenaya hassleriana HOM05D004079 ORTHO05D005437 2.3e-09 66.6 83 42.2
Gohir.A11G028901 Gossypium hirsutum HOM05D004079 ORTHO05D005437 3.0e-09 66.2 86 41.9
Gohir.D11G032200 Gossypium hirsutum HOM05D004079 ORTHO05D005437 3.0e-09 66.2 86 41.9
Gorai.007G035000 Gossypium raimondii HOM05D004079 ORTHO05D005437 3.0e-09 66.2 86 41.9
Potri.015G066400 Populus trichocarpa HOM05D004079 ORTHO05D005437 3.9e-09 65.9 84 41.7
Oeu006174.1 Olea europaea HOM05D004079 ORTHO05D005437 5.1e-09 65.5 84 40.5
Aa31LG4G4980 Aethionema arabicum HOM05D004079 ORTHO05D005437 6.6e-09 65.1 91 39.6
Manes.06G097200 Manihot esculenta HOM05D004079 ORTHO05D005437 8.6e-09 64.7 84 38.1
AUR62008344 Chenopodium quinoa HOM05D004079 ORTHO05D005437 1.1e-08 64.3 83 42.2
Ciclev10018829m.g Citrus clementina HOM05D004079 ORTHO05D005437 1.5e-08 63.9 84 40.5
FvH4_5g15730 Fragaria vesca HOM05D004079 ORTHO05D005437 1.5e-08 63.9 84 39.3
FAN18G0859 Fragaria x ananassa HOM05D004079 ORTHO05D005437 1.5e-08 63.9 84 39.3
PSO782G0394 Papaver somniferum HOM05D004079 ORTHO05D005437 1.5e-08 63.9 90 37.8
COL.COLO4_37914 Corchorus olitorius HOM05D004079 ORTHO05D005437 1.9e-08 63.5 81 40.7
FAN04G1937 Fragaria x ananassa HOM05D004079 ORTHO05D005437 1.9e-08 63.5 84 39.3
FAN08G0428 Fragaria x ananassa HOM05D004079 ORTHO05D005437 1.9e-08 63.5 84 39.3
FAN13G1290 Fragaria x ananassa HOM05D004079 ORTHO05D005437 1.9e-08 63.5 84 39.3
PSO832G1391 Papaver somniferum HOM05D004079 ORTHO05D005437 1.9e-08 63.5 85 40.0
BcaB02g06965 Brassica carinata HOM05D004079 ORTHO05D005437 2.5e-08 63.2 92 38.0
PSO591G0491 Papaver somniferum HOM05D004079 ORTHO05D005437 2.5e-08 63.2 90 37.8
Ah.02g113130 Amaranthus hybridus HOM05D004079 ORTHO05D005437 3.3e-08 62.8 83 39.8
C06p48780 Brassica napus HOM05D004079 ORTHO05D005437 3.3e-08 62.8 85 38.8
Duzib084G0772 Durio zibethinus HOM05D004079 ORTHO05D005437 3.3e-08 62.8 84 40.5
Thecc.03G077200 Theobroma cacao HOM05D004079 ORTHO05D005437 3.3e-08 62.8 85 40.0
GSVIVG01008078001 Vitis vinifera HOM05D004079 ORTHO05D005437 3.3e-08 62.8 84 39.3
Aa31LG7G3680 Aethionema arabicum HOM05D004079 ORTHO05D005437 4.3e-08 62.4 78 41.0
Cpa.g.sc17.195 Carica papaya HOM05D004079 ORTHO05D005437 4.3e-08 62.4 84 39.3
AUR62021753 Chenopodium quinoa HOM05D004079 ORTHO05D005437 4.3e-08 62.4 90 38.9
SGA_v2.0_scaffold56G20067 Striga asiatica HOM05D004079 ORTHO05D005437 4.3e-08 62.4 83 39.8
BcaC08g46901 Brassica carinata HOM05D004079 ORTHO05D005437 5.6e-08 62.0 85 38.8
BcaC08g46918 Brassica carinata HOM05D004079 ORTHO05D005437 5.6e-08 62.0 85 38.8
A07p40430 Brassica napus HOM05D004079 ORTHO05D005437 5.6e-08 62.0 85 38.8
BraA07t31585Z Brassica rapa HOM05D004079 ORTHO05D005437 5.6e-08 62.0 85 38.8
Duzib205G1164 Durio zibethinus HOM05D004079 ORTHO05D005437 5.6e-08 62.0 84 39.3
Thhalv10009547m.g Eutrema salsugineum HOM05D004079 ORTHO05D005437 5.6e-08 62.0 115 34.8
RcHm_v2.0_Chr7g0180381 Rosa chinensis HOM05D004079 ORTHO05D005437 5.6e-08 62.0 84 38.1
SEGI_13247 Sequoiadendron giganteum HOM05D000238 ORTHO05D005437 5.6e-08 62.0 84 39.3
BolC6t39914H Brassica oleracea HOM05D004079 ORTHO05D005437 7.3e-08 61.6 85 38.8
Glyma.05G030900 Glycine max HOM05D004079 ORTHO05D005437 7.3e-08 61.6 101 34.7
A07p29240 Brassica napus HOM05D004079 ORTHO05D005437 9.6e-08 61.2 83 39.8
C06p33140 Brassica napus HOM05D004079 ORTHO05D005437 9.6e-08 61.2 83 39.8
BolC6t38429H Brassica oleracea HOM05D004079 ORTHO05D005437 9.6e-08 61.2 83 39.8
BraA07t30563Z Brassica rapa HOM05D004079 ORTHO05D005437 9.6e-08 61.2 83 39.8
CARHR019550 Cardamine hirsuta HOM05D004079 ORTHO05D005437 9.6e-08 61.2 91 37.4
AT1G18900 Arabidopsis thaliana HOM05D004079 ORTHO05D005437 1.2e-07 60.8 115 34.8
Haze_07393 Corylus avellana HOM05D004079 ORTHO05D005437 1.2e-07 60.8 84 35.7
QL10p014896 Quercus lobata HOM05D004079 ORTHO05D005437 1.2e-07 60.8 84 36.9
Zm00001eb348820 Zea mays HOM05D007242 ORTHO05D009089 1.2e-07 60.8 115 34.8
AL1G31480 Arabidopsis lyrata HOM05D004079 ORTHO05D005437 1.6e-07 60.5 115 34.8
AT1G74750 Arabidopsis thaliana HOM05D004079 ORTHO05D005437 1.6e-07 60.5 83 38.6
Carub.0001s1855 Capsella rubella HOM05D004079 ORTHO05D005437 1.6e-07 60.5 84 38.1
DCAR_005313 Daucus carota HOM05D004079 ORTHO05D005437 1.6e-07 60.5 91 37.4
Hma1.2p1_0104F.1_g050360 Hydrangea macrophylla HOM05D004079 ORTHO05D005437 1.6e-07 60.5 127 32.3
MD06G1185900 Malus domestica HOM05D004079 ORTHO05D005437 1.6e-07 60.5 84 36.9
TAR629G1274 Trochodendron aralioides HOM05D004079 ORTHO05D005437 1.6e-07 60.5 83 37.3
AL2G34640 Arabidopsis lyrata HOM05D004079 ORTHO05D005437 2.1e-07 60.1 83 38.6
Cfa019013 Carpinus fangiana HOM05D004079 ORTHO05D005437 2.1e-07 60.1 84 35.7
SGA_v2.0_scaffold25G10886 Striga asiatica HOM05D004079 ORTHO05D005437 2.1e-07 60.1 83 36.1
Atru.chr9.2336 Acer truncatum HOM05D004079 ORTHO05D005437 2.8e-07 59.7 84 35.7
CDE06G0164 Ceratophyllum demersum HOM05D004079 ORTHO05D005437 2.8e-07 59.7 79 40.5
CiPaw.11G036400 Carya illinoinensis HOM05D004079 ORTHO05D005437 3.6e-07 59.3 84 35.7
Prupe.5G184700 Prunus persica HOM05D004079 ORTHO05D005437 3.6e-07 59.3 84 36.9
ECA232G1217 Erigeron canadensis HOM05D004079 ORTHO05D005437 4.7e-07 58.9 86 37.2
Nitab4.5_0007282g0060 Nicotiana tabacum HOM05D004079 ORTHO05D005437 4.7e-07 58.9 84 36.9
TWI15G0380 Tripterygium wilfordii HOM05D004079 ORTHO05D005437 4.7e-07 58.9 82 37.8
CARHR068060 Cardamine hirsuta HOM05D004079 ORTHO05D005437 6.2e-07 58.5 91 36.3
Dinv38652 Davidia involucrata HOM05D004079 ORTHO05D005437 6.2e-07 58.5 86 36.0
Rhsim12G0159600 Rhododendron simsii HOM05D004079 ORTHO05D005437 6.2e-07 58.5 83 34.9
CANSAT80G2283 Cannabis sativa HOM05D004079 ORTHO05D005437 8.1e-07 58.2 87 35.6
Carub.0002s2154 Capsella rubella HOM05D004079 ORTHO05D005437 8.1e-07 58.2 83 34.9
Lj5P117T35 Lonicera japonica HOM05D004079 ORTHO05D005437 8.1e-07 58.2 84 36.9
Nn4g23007 Nelumbo nucifera HOM05D004079 ORTHO05D005437 8.1e-07 58.2 78 39.7
Actinidia19062 Actinidia chinensis HOM05D004079 ORTHO05D005437 1.1e-06 57.8 91 37.4
Aqoxy3G00809 Aquilegia oxysepala HOM05D004079 ORTHO05D005437 1.1e-06 57.8 74 37.8
Thhalv10018113m.g Eutrema salsugineum HOM05D004079 ORTHO05D005437 1.1e-06 57.8 83 37.3
SalBow5G5059 Salvia bowleyana HOM05D004079 ORTHO05D005437 1.1e-06 57.8 84 36.9
ATR0006G044 Amborella trichopoda HOM05D004079 ORTHO05D009709 1.4e-06 57.4 70 40.0
CSS0036009 Camellia sinensis var. sinensis HOM05D004079 ORTHO05D005437 1.4e-06 57.4 84 36.9
CSS0048290 Camellia sinensis var. sinensis HOM05D004079 ORTHO05D005437 1.4e-06 57.4 84 36.9
Sp1g16880 Schrenkiella parvula HOM05D004079 ORTHO05D005437 1.8e-06 57.0 91 36.3
Solyc03g113380.4 Solanum lycopersicum HOM05D004079 ORTHO05D005437 1.8e-06 57.0 84 35.7
Sopen03g032430 Solanum pennellii HOM05D004079 ORTHO05D005437 1.8e-06 57.0 84 35.7
PGSC0003DMG400013180 Solanum tuberosum HOM05D004079 ORTHO05D005437 1.8e-06 57.0 84 35.7
Zm00001eb033110 Zea mays HOM05D004079 ORTHO05D005437 1.8e-06 57.0 76 39.5
MD14G1192100 Malus domestica HOM05D004079 ORTHO05D005437 2.4e-06 56.6 92 34.8
PGR044G0186 Punica granatum HOM05D004079 ORTHO05D005437 2.4e-06 56.6 84 34.5
Actinidia34976 Actinidia chinensis HOM05D004079 ORTHO05D005437 3.1e-06 56.2 85 37.6
Aqoxy3G03237 Aquilegia oxysepala HOM05D004079 ORTHO05D005437 3.1e-06 56.2 85 35.3
TAR383G0079 Trochodendron aralioides HOM05D007686 ORTHO05D009709 3.1e-06 56.2 70 42.9
Nitab4.5_0004478g0010 Nicotiana tabacum HOM05D004079 ORTHO05D005437 4.0e-06 55.8 78 37.2
Peaxi162Scf00009g00051 Petunia axillaris HOM05D004079 ORTHO05D005437 4.0e-06 55.8 84 34.5
Mapoly0050s0075 Marchantia polymorpha HOM05D004079 ORTHO05D005437 5.2e-06 55.5 85 31.8
Migut.I00116 Erythranthe guttata HOM05D004079 ORTHO05D005437 6.8e-06 55.1 83 33.7
Mapoly0114s0020 Marchantia polymorpha HOM05D004079 ORTHO05D005437 6.8e-06 55.1 77 35.1
Os12g0638900 Oryza sativa ssp. japonica HOM05D004079 ORTHO05D005437 6.8e-06 55.1 76 38.2
AagrBONN_evm.TU.Sc2ySwM_117.3400 Anthoceros agrestis HOM05D004079 ORTHO05D005437 8.9e-06 54.7 123 28.5
TPR.G11874 Trifolium pratense HOM05D004079 ORTHO05D005437 8.9e-06 54.7 87 35.6


User provided reference genes

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