Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G051500 Glycine max HOM05D002209 ORTHO05D004761 1.5e-206 722.6 370 100.0
Glyma.05G243700 Glycine max HOM05D002209 ORTHO05D004761 2.4e-196 688.7 368 95.9
Phvul.002G327400 Phaseolus vulgaris HOM05D002209 ORTHO05D004761 8.3e-181 637.1 367 88.3
VMungo0251G1482 Vigna mungo HOM05D002209 ORTHO05D004761 1.7e-178 629.4 369 87.5
Lj4g0012439 Lotus japonicus HOM05D002209 ORTHO05D004761 1.6e-163 579.7 371 79.2
Lalb_Chr16g0387141 Lupinus albus HOM05D002209 ORTHO05D004761 4.9e-157 558.1 371 77.6
Lalb_Chr09g0330521 Lupinus albus HOM05D002209 ORTHO05D004761 2.7e-155 552.4 371 76.5
TPR.G12929 Trifolium pratense HOM05D002209 ORTHO05D004761 1.6e-152 543.1 372 76.3
arahy.Tifrunner.gnm1.ann1.6WJC3X Arachis hypogaea HOM05D002209 ORTHO05D004761 1.4e-148 530.0 408 69.9
Lalb_Chr05g0221871 Lupinus albus HOM05D002209 ORTHO05D004761 4.2e-148 528.5 372 73.4
Medtr8g106780 Medicago truncatula HOM05D002209 ORTHO05D004761 4.2e-148 528.5 369 74.3
Ca_17220_v3 Cicer arietinum L. HOM05D002209 ORTHO05D004761 1.2e-142 510.4 357 75.6
GSVIVG01008394001 Vitis vinifera HOM05D002209 ORTHO05D004761 5.3e-127 458.4 371 64.7
Thecc.03G048800 Theobroma cacao HOM05D002209 ORTHO05D004761 3.4e-126 455.7 369 63.1
Gohir.A09G051300 Gossypium hirsutum HOM05D002209 ORTHO05D004761 2.2e-125 453.0 368 62.2
Gohir.D09G052400 Gossypium hirsutum HOM05D002209 ORTHO05D004761 2.9e-125 452.6 368 61.7
Gorai.006G057200 Gossypium raimondii HOM05D002209 ORTHO05D004761 1.1e-124 450.7 368 61.7
Duzib205G0470 Durio zibethinus HOM05D002209 ORTHO05D004761 1.4e-124 450.3 369 61.8
COL.COLO4_05870 Corchorus olitorius HOM05D002209 ORTHO05D004761 1.9e-124 449.9 369 62.3
Duzib084G0729 Durio zibethinus HOM05D002209 ORTHO05D004761 7.2e-124 448.0 369 62.3
Psat7g003880 Pisum sativum HOM05D002209 ORTHO05D004761 6.1e-123 444.9 312 75.3
Eucgr.B00855 Eucalyptus grandis HOM05D002209 ORTHO05D004761 1.4e-122 443.7 370 60.5
Dinv29939 Davidia involucrata HOM05D002209 ORTHO05D004761 2.3e-122 443.0 365 62.2
Lj9A421T102 Lonicera japonica HOM05D002209 ORTHO05D004761 1.1e-121 440.7 363 62.5
Rhsim07G0079200 Rhododendron simsii HOM05D002209 ORTHO05D004761 4.4e-121 438.7 365 61.9
CiPaw.16G090800 Carya illinoinensis HOM05D002209 ORTHO05D004761 5.7e-121 438.3 370 63.0
Dinv24643 Davidia involucrata HOM05D002209 ORTHO05D004761 9.7e-121 437.6 365 61.4
PGR083G2774 Punica granatum HOM05D002209 ORTHO05D004761 2.2e-120 436.4 373 61.7
CSS0032919 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.1e-119 434.1 365 60.3
TWI81G0085 Tripterygium wilfordii HOM05D002209 ORTHO05D004761 4.1e-119 432.2 371 59.8
Manes.06G008500 Manihot esculenta HOM05D002209 ORTHO05D004761 5.3e-119 431.8 372 60.2
CSS0009925 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.5e-118 430.3 364 59.9
RhsimUnG0064800 Rhododendron simsii HOM05D002209 ORTHO05D004761 2.6e-118 429.5 378 60.1
Potri.015G041700 Populus trichocarpa HOM05D002209 ORTHO05D004761 4.2e-116 422.2 370 61.1
Ciclev10008707m.g Citrus clementina HOM05D002209 ORTHO05D004761 1.6e-115 420.2 369 58.0
Nn4g24077 Nelumbo nucifera HOM05D002209 ORTHO05D004761 2.1e-115 419.9 370 59.7
Atru.chr9.949 Acer truncatum HOM05D002209 ORTHO05D004761 3.9e-114 415.6 368 58.7
RcHm_v2.0_Chr7g0178801 Rosa chinensis HOM05D002209 ORTHO05D004761 8.8e-114 414.5 370 60.3
Peaxi162Scf01127g00030 Petunia axillaris HOM05D002209 ORTHO05D004761 1.5e-113 413.7 372 55.6
Peaxi162Scf00683g00231 Petunia axillaris HOM05D002209 ORTHO05D004761 2.6e-113 412.9 365 56.2
Cc04_g06630 Coffea canephora HOM05D002209 ORTHO05D004761 4.4e-113 412.1 366 57.9
Prupe.5G229900 Prunus persica HOM05D002209 ORTHO05D004761 4.4e-113 412.1 370 59.7
Nn3g18057 Nelumbo nucifera HOM05D002209 ORTHO05D004761 1.7e-112 410.2 372 58.6
Potri.012G049700 Populus trichocarpa HOM05D002209 ORTHO05D004761 1.7e-112 410.2 370 58.9
MD00G1160600 Malus domestica HOM05D002209 ORTHO05D004761 2.8e-112 409.5 371 59.8
CAN.G1129.31 Capsicum annuum HOM05D002209 ORTHO05D004761 2.6e-110 402.9 365 55.3
CANSAT80G1163 Cannabis sativa HOM05D002209 ORTHO05D004761 4.5e-110 402.1 367 55.6
CANSAT80G2224 Cannabis sativa HOM05D002209 ORTHO05D004761 4.5e-110 402.1 367 55.6
PGSC0003DMG402005658 Solanum tuberosum HOM05D002209 ORTHO05D004761 1.3e-109 400.6 365 54.8
MD14G1233700 Malus domestica HOM05D002209 ORTHO05D004761 2.2e-109 399.8 371 58.5
CsaV3_1G004130 Cucumis sativus L. HOM05D002209 ORTHO05D004761 5.0e-109 398.7 374 56.7
Nitab4.5_0001158g0020 Nicotiana tabacum HOM05D002209 ORTHO05D004761 5.0e-109 398.7 365 54.5
Sed0007305 Sechium edule HOM05D002209 ORTHO05D004761 8.5e-109 397.9 372 56.5
Solyc03g119030.4 Solanum lycopersicum HOM05D002209 ORTHO05D004761 1.9e-108 396.7 365 54.2
FAN18G1515 Fragaria x ananassa HOM05D002209 ORTHO05D004761 4.2e-108 395.6 370 58.4
Hma1.2p1_0669F.1_g200340 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 4.2e-108 395.6 370 55.7
Lsat_1_v5_gn_3_1001 Lactuca sativa HOM05D002209 ORTHO05D004761 5.5e-108 395.2 364 57.7
Sopen03g037920 Solanum pennellii HOM05D002209 ORTHO05D004761 5.5e-108 395.2 365 53.7
DCAR_011382 Daucus carota HOM05D002209 ORTHO05D004761 1.2e-107 394.0 363 55.1
Sc12g0007380 Simmondsia chinensis HOM05D002209 ORTHO05D004761 6.1e-107 391.7 370 54.6
THA.LOC104821836 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 6.1e-107 391.7 372 56.2
HanXRQChr05g0144521 Helianthus annuus HOM05D002209 ORTHO05D004761 1.4e-106 390.6 363 55.9
FvH4_5g17050 Fragaria vesca HOM05D002209 ORTHO05D004761 4.0e-106 389.0 370 57.6
AT1G48635 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 5.2e-106 388.7 366 56.0
MBI10_g07297_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 2.6e-105 386.3 373 54.7
Nitab4.5_0012369g0030 Nicotiana tabacum HOM05D002209 ORTHO05D004761 3.4e-105 386.0 380 51.3
MSTRG.4560 Avicennia marina HOM05D002209 ORTHO05D004761 1.7e-104 383.6 362 53.9
MSTRG.9285 Avicennia marina HOM05D002209 ORTHO05D004761 2.8e-104 382.9 363 53.7
FAN08G3349 Fragaria x ananassa HOM05D002209 ORTHO05D004761 8.3e-104 381.3 367 57.2
ECA246G4025 Erigeron canadensis HOM05D002209 ORTHO05D004761 1.1e-103 380.9 330 59.1
AL1G55300 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 2.4e-103 379.8 366 54.4
PSO782G2563 Papaver somniferum HOM05D002209 ORTHO05D004761 2.4e-103 379.8 376 53.2
Sp1g35610 Schrenkiella parvula HOM05D002209 ORTHO05D004761 3.1e-103 379.4 367 54.5
vmacro16528 Vaccinium macrocarpon HOM05D002209 ORTHO05D004761 2.0e-102 376.7 364 55.5
Actinidia35110 Actinidia chinensis HOM05D002209 ORTHO05D004761 2.7e-102 376.3 326 59.8
CARHR038280 Cardamine hirsuta HOM05D002209 ORTHO05D004761 2.7e-102 376.3 366 54.4
Carub.0001s3778 Capsella rubella HOM05D002209 ORTHO05D004761 7.7e-102 374.8 366 54.9
Aa31LG10G5170 Aethionema arabicum HOM05D003754 ORTHO05D004530 3.8e-101 372.5 364 53.6
THA.LOC104820369 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 8.5e-101 371.3 376 53.7
Thhalv10011573m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 2.5e-100 369.8 381 53.5
FAN13G0599 Fragaria x ananassa HOM05D002209 ORTHO05D004761 2.5e-100 369.8 368 55.7
Nitab4.5_0000150g0110 Nicotiana tabacum HOM05D002209 ORTHO05D004761 2.5e-100 369.8 385 51.4
A06p04280 Brassica napus HOM05D002209 ORTHO05D004761 5.5e-100 368.6 368 53.8
Aqoxy3G03975 Aquilegia oxysepala HOM05D002209 ORTHO05D004761 1.2e-99 367.5 374 53.2
BcaB07g33725 Brassica carinata HOM05D002209 ORTHO05D004761 4.7e-99 365.5 367 53.1
PSO063G7528 Papaver somniferum HOM05D002209 ORTHO05D004761 4.7e-99 365.5 367 53.1
BcaC08g43072 Brassica carinata HOM05D002209 ORTHO05D004761 6.1e-99 365.2 367 53.4
ClCG06G014470 Citrullus lanatus HOM05D002209 ORTHO05D004761 6.1e-99 365.2 370 52.7
TAR629G1642 Trochodendron aralioides HOM05D002209 ORTHO05D004761 1.4e-98 364.0 314 59.9
AL3G31330 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 1.8e-98 363.6 366 53.6
C06p03290 Brassica napus HOM05D002209 ORTHO05D004761 3.0e-98 362.8 367 53.1
CARHR093480 Cardamine hirsuta HOM05D002209 ORTHO05D004761 1.2e-97 360.9 365 53.4
Sabra15G0063000 Salix brachista HOM05D002209 ORTHO05D004761 3.4e-97 359.4 486 44.9
SalBow1G1036 Salvia bowleyana HOM05D002209 ORTHO05D004761 4.4e-97 359.0 391 48.6
EL10Ac8g19603 Beta vulgaris HOM05D002209 ORTHO05D004761 1.3e-96 357.5 406 48.8
AT3G18160 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 2.2e-96 356.7 366 52.2
BcaB04g18980 Brassica carinata HOM05D002209 ORTHO05D004761 4.1e-95 352.4 370 51.9
BraA06t23631Z Brassica rapa HOM05D002209 ORTHO05D004761 5.4e-95 352.1 404 48.8
BolC3t17231H Brassica oleracea HOM05D002209 ORTHO05D004761 7.0e-95 351.7 371 52.3
BolC6t35461H Brassica oleracea HOM05D002209 ORTHO05D004761 2.0e-94 350.1 400 48.8
Migut.D01447 Erythranthe guttata HOM05D002209 ORTHO05D004761 4.5e-94 349.0 363 49.0
Sabra15G0055400 Salix brachista HOM05D002209 ORTHO05D004761 4.5e-94 349.0 508 42.7
Sp3g16270 Schrenkiella parvula HOM05D002209 ORTHO05D004761 1.0e-93 347.8 368 51.9
A03p40560 Brassica napus HOM05D002209 ORTHO05D004761 1.3e-93 347.4 369 52.0
BraA03t13213Z Brassica rapa HOM05D002209 ORTHO05D004761 1.7e-93 347.1 371 51.8
Carub.0003s1787 Capsella rubella HOM05D002209 ORTHO05D004761 2.9e-93 346.3 365 51.5
TAR622G1360 Trochodendron aralioides HOM05D002209 ORTHO05D004761 2.9e-93 346.3 317 58.7
BcaB04g20791 Brassica carinata HOM05D002209 ORTHO05D004761 3.8e-93 345.9 365 51.5
Duzib068G1457 Durio zibethinus HOM05D002209 ORTHO05D004761 6.6e-93 345.1 367 50.7
C03p49370 Brassica napus HOM05D002209 ORTHO05D004761 5.6e-92 342.0 381 50.9
BcaC09g48771 Brassica carinata HOM05D002209 ORTHO05D004761 9.5e-92 341.3 362 51.7
Aa31LG8G4990 Aethionema arabicum HOM05D002209 ORTHO05D004761 1.6e-91 340.5 353 51.6
Cpa.g.sc3.426 Carica papaya HOM05D002209 ORTHO05D004761 6.1e-91 338.6 311 59.2
MBI16_g47222_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 6.1e-91 338.6 374 50.0
Haze_18790 Corylus avellana HOM05D002209 ORTHO05D004761 1.0e-90 337.8 566 41.0
HPP92_008203 Vanilla planifolia HOM05D002209 ORTHO05D004761 3.0e-90 336.3 374 49.5
Thhalv10020989m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 4.0e-90 335.9 367 50.1
CDE02G4061 Ceratophyllum demersum HOM05D002209 ORTHO05D004761 2.6e-89 333.2 369 49.6
BraA01t03699Z Brassica rapa HOM05D002209 ORTHO05D007926 3.7e-88 329.3 356 50.3
C01p46070 Brassica napus HOM05D002209 ORTHO05D007926 6.4e-88 328.6 352 51.1
Nitab4.5_0012395g0010 Nicotiana tabacum HOM05D002209 ORTHO05D004761 8.3e-88 328.2 314 55.1
Hund22655 Selenicereus undatus HOM05D002209 ORTHO05D004761 1.4e-87 327.4 354 51.1
BcaC01g03707 Brassica carinata HOM05D002209 ORTHO05D004761 2.4e-87 326.6 372 50.8
SHI19025 Sapria himalayana HOM05D002209 ORTHO05D000001 3.2e-87 326.2 372 48.1
BolC1t04568H Brassica oleracea HOM05D002209 ORTHO05D007926 4.1e-87 325.9 353 50.7
MELO3C017339.2 Cucumis melo HOM05D002209 ORTHO05D004761 9.5e-84 314.7 295 54.9
Sed0027899 Sechium edule HOM05D002209 ORTHO05D004761 1.4e-82 310.8 286 54.5
AUR62002654 Chenopodium quinoa HOM05D002209 ORTHO05D004761 2.4e-79 300.1 310 52.3
Psat0s3278g0200 Pisum sativum HOM05D002209 ORTHO05D004761 7.0e-79 298.5 280 61.4
SGA_v2.0_scaffold171G38932 Striga asiatica HOM05D002209 ORTHO05D004761 6.2e-75 285.4 475 37.9
A01p36240 Brassica napus HOM05D002209 ORTHO05D007926 8.6e-69 265.0 299 49.8
Oeu017507.1 Olea europaea HOM05D002209 ORTHO05D004761 9.5e-68 261.5 208 62.5
CSS0022680 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 8.1e-67 258.5 210 61.9
MBI16_g47372_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 2.0e-65 253.8 313 47.9
QL10p027517 Quercus lobata HOM05D002209 ORTHO05D004761 3.9e-61 239.6 201 60.7
FAN04G3108 Fragaria x ananassa HOM05D002209 ORTHO05D004761 6.6e-61 238.8 210 60.0
Sopen12g020100 Solanum pennellii HOM05D002209 ORTHO05D004761 1.9e-60 237.3 208 55.8
Solyc12g040500.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 3.3e-60 236.5 207 56.0
CSS0038011 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 5.6e-60 235.7 202 58.9
CSS0012524 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 7.3e-60 235.3 166 71.1
CSS0040553 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.6e-59 234.2 202 58.9
SEGI_04696 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 5.2e-58 229.2 339 40.7
Zm00001eb098030 Zea mays HOM05D002209 ORTHO05D004761 6.8e-58 228.8 316 41.1
AUR62040790 Chenopodium quinoa HOM05D002209 ORTHO05D004761 1.5e-57 227.6 310 43.9
Hma1.2p1_0669F.1_g200330 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 2.9e-56 223.4 165 67.3
Gorai.007G186700 Gossypium raimondii HOM05D002209 ORTHO05D004761 1.4e-55 221.1 166 66.9
Gohir.D08G140100 Gossypium hirsutum HOM05D002209 ORTHO05D004761 2.4e-55 220.3 166 66.9
Gorai.008G042300 Gossypium raimondii HOM05D002209 ORTHO05D004761 3.2e-55 219.9 166 66.3
Mapoly0003s0191 Marchantia polymorpha HOM05D002209 ORTHO05D004761 5.4e-55 219.2 375 35.5
Gorai.004G122400 Gossypium raimondii HOM05D002209 ORTHO05D004761 2.7e-54 216.9 166 65.7
CSS0005213 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 5.1e-53 212.6 159 66.7
AagrBONN_evm.TU.Sc2ySwM_344.1865 Anthoceros agrestis HOM05D002209 ORTHO05D004761 4.0e-50 203.0 377 35.0
Gohir.D13G126266 Gossypium hirsutum HOM05D002209 ORTHO05D004761 5.3e-50 202.6 165 63.0
Pp3c8_16550 Physcomitrium patens HOM05D002209 ORTHO05D004761 1.7e-48 197.6 375 34.4
Pp3c24_12050 Physcomitrium patens HOM05D002209 ORTHO05D004761 1.1e-47 194.9 374 34.5
Pp3c20_5170 Physcomitrium patens HOM05D002209 ORTHO05D004761 9.3e-47 191.8 374 34.2
CBR_g38112 Chara braunii HOM05D002209 ORTHO05D004761 2.5e-44 183.7 367 32.2
PGSC0003DMG400015821 Solanum tuberosum HOM05D002209 ORTHO05D004761 2.5e-44 183.7 155 58.1
CSS0016222 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 4.8e-43 179.5 189 53.4
unitig_0.g802 Utricularia gibba HOM05D002209 ORTHO05D004761 2.0e-41 174.1 199 43.2
SMO367G0254 Selaginella moellendorffii HOM05D002209 ORTHO05D004761 5.8e-41 172.6 370 32.2
GSVIVG01008387001 Vitis vinifera HOM05D002209 ORTHO05D004761 1.9e-39 167.5 163 54.0
Gorai.008G062000 Gossypium raimondii HOM05D002209 ORTHO05D004761 7.1e-39 165.6 130 63.8
SEGI_01637 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 1.8e-37 161.0 257 40.1
CSS0034654 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 3.0e-37 160.2 108 75.0
Solyc12g040480.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 6.2e-35 152.5 158 48.1
Sopen12g020080 Solanum pennellii HOM05D002209 ORTHO05D004761 8.1e-35 152.1 158 48.1
CAN.G197.13 Capsicum annuum HOM05D002209 ORTHO05D004761 3.1e-34 150.2 123 59.3
CSS0050298 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 5.3e-34 149.4 152 53.9
ATR0326G049 Amborella trichopoda HOM05D002209 ORTHO05D004761 1.3e-27 128.3 174 41.4
Os09g0314300 Oryza sativa ssp. japonica HOM05D002209 ORTHO05D004761 3.1e-26 123.6 128 48.4
PGSC0003DMG400015822 Solanum tuberosum HOM05D002209 ORTHO05D004761 7.6e-25 119.0 135 45.9
Oeu053224.1 Olea europaea HOM05D002209 ORTHO05D004761 4.6e-22 109.8 136 42.6
Oeu017505.1 Olea europaea HOM05D002209 ORTHO05D004761 1.3e-21 108.2 136 41.2
PRCOL_00001207 Prasinoderma coloniale HOM05D006727 ORTHO05D008408 2.2e-11 74.3 229 26.2
AagrBONN_evm.TU.Sc2ySwM_368.2096 Anthoceros agrestis HOM05D002209 ORTHO05D004761 4.8e-11 73.2 308 26.6
arahy.Tifrunner.gnm1.ann1.C5B8HT Arachis hypogaea HOM05D002209 ORTHO05D004761 1.1e-10 72.0 43 76.7


User provided reference genes

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