Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G049300 Glycine max HOM05D004432 ORTHO05D005427 3.1e-205 718.4 399 100.0
Glyma.05G241800 Glycine max HOM05D004432 ORTHO05D005427 4.3e-159 565.1 357 90.5
Phvul.002G325100 Phaseolus vulgaris HOM05D004432 ORTHO05D005427 1.0e-155 553.9 358 82.1
Lj4g0008002 Lotus japonicus HOM05D004432 ORTHO05D005427 5.7e-143 511.5 400 78.2
arahy.Tifrunner.gnm1.ann1.AGE02H Arachis hypogaea HOM05D004432 ORTHO05D005427 3.1e-141 505.8 370 75.1
arahy.Tifrunner.gnm1.ann1.GLQ3B3 Arachis hypogaea HOM05D004432 ORTHO05D005427 1.6e-140 503.4 370 74.9
VMungo0251G3730 Vigna mungo HOM05D004432 ORTHO05D005427 6.5e-139 498.0 358 80.2
CiPaw.10G104800 Carya illinoinensis HOM05D004432 ORTHO05D005427 1.5e-138 496.9 394 69.0
Ca_17239_v3 Cicer arietinum L. HOM05D004432 ORTHO05D005427 2.1e-137 493.0 370 75.4
TPR.G12851 Trifolium pratense HOM05D004432 ORTHO05D005427 7.5e-135 484.6 361 71.2
Medtr8g106220 Medicago truncatula HOM05D004432 ORTHO05D005427 2.4e-133 479.6 399 66.2
Psat7g005440 Pisum sativum HOM05D004432 ORTHO05D005427 4.1e-133 478.8 370 69.7
Atru.chr8.662 Acer truncatum HOM05D004432 ORTHO05D005427 2.2e-131 473.0 398 67.3
Ciclev10015448m.g Citrus clementina HOM05D004432 ORTHO05D005427 1.9e-130 469.9 404 66.3
Lalb_Chr09g0330711 Lupinus albus HOM05D004432 ORTHO05D005427 5.5e-130 468.4 369 75.3
Lalb_Chr05g0222011 Lupinus albus HOM05D004432 ORTHO05D005427 1.0e-128 464.2 360 74.4
Thecc.02G004200 Theobroma cacao HOM05D004432 ORTHO05D005427 6.8e-128 461.5 364 71.2
COL.COLO4_18029 Corchorus olitorius HOM05D004432 ORTHO05D003521 2.2e-126 456.4 353 71.1
Atru.chr10.352 Acer truncatum HOM05D004432 ORTHO05D005427 4.9e-126 455.3 361 70.9
Cc09_g05240 Coffea canephora HOM05D004432 ORTHO05D005427 1.5e-122 443.7 357 67.2
MD05G1247000 Malus domestica HOM05D004432 ORTHO05D005427 1.6e-121 440.3 361 67.9
Gohir.D12G047900 Gossypium hirsutum HOM05D004432 ORTHO05D005427 8.9e-120 434.5 362 66.6
Potri.001G160700 Populus trichocarpa HOM05D004432 ORTHO05D005427 1.5e-119 433.7 402 62.2
MELO3C007033.2 Cucumis melo HOM05D004432 ORTHO05D005427 2.0e-119 433.3 359 68.2
Gohir.A12G049500 Gossypium hirsutum HOM05D004432 ORTHO05D005427 7.5e-119 431.4 362 66.6
Sed0004537 Sechium edule HOM05D004432 ORTHO05D005427 1.3e-118 430.6 363 66.4
RcHm_v2.0_Chr5g0021051 Rosa chinensis HOM05D004432 ORTHO05D005427 2.9e-118 429.5 362 67.1
Gorai.008G050900 Gossypium raimondii HOM05D004432 ORTHO05D005427 8.3e-118 427.9 391 62.9
CsaV3_6G052770 Cucumis sativus L. HOM05D004432 ORTHO05D005427 1.1e-117 427.6 363 67.2
FAN25G3492 Fragaria x ananassa HOM05D004432 ORTHO05D005427 1.8e-117 426.8 360 67.2
PGSC0003DMG401017733 Solanum tuberosum HOM05D004432 ORTHO05D005427 2.4e-117 426.4 359 64.9
FvH4_3g12940 Fragaria vesca HOM05D004432 ORTHO05D005427 3.2e-117 426.0 360 67.2
Sabra03G0044900 Salix brachista HOM05D004432 ORTHO05D005427 4.1e-117 425.6 367 67.0
FAN16G2829 Fragaria x ananassa HOM05D004432 ORTHO05D005427 9.2e-117 424.5 360 66.9
MD10G1227600 Malus domestica HOM05D004432 ORTHO05D005427 2.7e-116 422.9 365 66.0
Duzib132G0752 Durio zibethinus HOM05D004432 ORTHO05D005427 4.6e-116 422.2 353 67.1
FAN11G2748 Fragaria x ananassa HOM05D004432 ORTHO05D005427 7.8e-116 421.4 351 68.1
Oeu056059.4 Olea europaea HOM05D004432 ORTHO05D005427 7.8e-116 421.4 361 65.4
FAN21G3105 Fragaria x ananassa HOM05D004432 ORTHO05D005427 1.3e-115 420.6 360 66.7
Oeu018409.2 Olea europaea HOM05D004432 ORTHO05D005427 2.9e-115 419.5 353 68.3
ClCG01G025530 Citrullus lanatus HOM05D004432 ORTHO05D005427 3.9e-115 419.1 362 66.0
Actinidia33704 Actinidia chinensis HOM05D004432 ORTHO05D005427 1.9e-114 416.8 401 60.6
Manes.03G075400 Manihot esculenta HOM05D004432 ORTHO05D005427 7.3e-114 414.8 360 69.2
Nitab4.5_0010401g0010 Nicotiana tabacum HOM05D004432 ORTHO05D005427 9.5e-114 414.5 366 63.1
Duzib248G0466 Durio zibethinus HOM05D004432 ORTHO05D005427 1.6e-113 413.7 352 65.3
Nitab4.5_0006794g0040 Nicotiana tabacum HOM05D004432 ORTHO05D005427 2.8e-113 412.9 366 63.1
TAR624G0396 Trochodendron aralioides HOM05D004432 ORTHO05D005427 1.2e-111 407.5 363 62.3
Peaxi162Scf00198g01525 Petunia axillaris HOM05D004432 ORTHO05D005427 1.5e-111 407.1 366 67.2
Sopen02g026240 Solanum pennellii HOM05D004432 ORTHO05D005427 1.5e-111 407.1 353 64.0
Solyc02g081620.3 Solanum lycopersicum HOM05D004432 ORTHO05D005427 5.8e-111 405.2 359 62.7
DCAR_003760 Daucus carota HOM05D004432 ORTHO05D005427 7.5e-111 404.8 357 63.9
PSO675G3183 Papaver somniferum HOM05D004432 ORTHO05D005427 5.4e-109 398.7 358 64.0
PSO541G2602 Papaver somniferum HOM05D004432 ORTHO05D005427 1.2e-108 397.5 369 61.8
CANSAT35G1493 Cannabis sativa HOM05D004432 ORTHO05D005427 1.6e-108 397.1 362 61.9
CAN.G809.71 Capsicum annuum HOM05D004432 ORTHO05D005427 2.0e-108 396.7 352 62.5
TWI63G0296 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 1.0e-107 394.4 360 60.8
SalBow8G1652 Salvia bowleyana HOM05D004432 ORTHO05D005427 1.7e-107 393.7 363 61.2
Lj1A1149G74 Lonicera japonica HOM05D004432 ORTHO05D005427 3.9e-107 392.5 377 62.3
Cpa.g.sc30.114 Carica papaya HOM05D004432 ORTHO05D005427 5.0e-107 392.1 389 60.2
Nn7g38330 Nelumbo nucifera HOM05D004432 ORTHO05D005427 5.0e-107 392.1 376 59.0
Dinv31191 Davidia involucrata HOM05D004432 ORTHO05D005427 6.6e-107 391.7 363 61.7
ECA232G3357 Erigeron canadensis HOM05D004432 ORTHO05D005427 6.6e-107 391.7 372 60.5
Hma1.2p1_0088F.1_g045180 Hydrangea macrophylla HOM05D004432 ORTHO05D005427 1.5e-106 390.6 363 61.4
TWI15G0381 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 4.3e-106 389.0 359 60.2
CSS0046356 Camellia sinensis var. sinensis HOM05D004432 ORTHO05D005427 9.5e-106 387.9 362 62.4
Lalb_Chr10g0095541 Lupinus albus HOM05D004432 ORTHO05D005427 2.1e-105 386.7 345 69.9
TWI34G0639 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 2.8e-105 386.3 352 62.2
Peaxi162Scf00048g01413 Petunia axillaris HOM05D004432 ORTHO05D005427 1.8e-104 383.6 360 60.3
TWI15G1036 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 1.8e-104 383.6 352 62.5
CSS0030674 Camellia sinensis var. sinensis HOM05D004432 ORTHO05D005427 1.2e-103 380.9 360 60.6
GSVIVG01015880001 Vitis vinifera HOM05D004432 ORTHO05D005427 1.5e-103 380.6 357 59.4
Sabra01G0131600 Salix brachista HOM05D004432 ORTHO05D005427 2.0e-103 380.2 357 64.4
GSVIVG01012145001 Vitis vinifera HOM05D004432 ORTHO05D005427 3.4e-103 379.4 362 60.2
Prupe.4G117400 Prunus persica HOM05D004432 ORTHO05D005427 4.4e-103 379.0 378 59.3
AL1G45380 Arabidopsis lyrata HOM05D004432 ORTHO05D005427 7.5e-103 378.3 360 61.1
SGA_v2.0_scaffold175G39329 Striga asiatica HOM05D004432 ORTHO05D005427 6.4e-102 375.2 426 54.9
Aqoxy1G01396 Aquilegia oxysepala HOM05D004432 ORTHO05D005427 5.4e-101 372.1 354 58.2
Carub.0001s2938 Capsella rubella HOM05D004432 ORTHO05D005427 9.2e-101 371.3 367 62.9
AT1G30970 Arabidopsis thaliana HOM05D004432 ORTHO05D005427 2.1e-100 370.2 370 62.2
PGR042G3514 Punica granatum HOM05D004432 ORTHO05D005427 2.7e-100 369.8 367 57.8
unitig_748.g7489 Utricularia gibba HOM05D004432 ORTHO05D005427 2.7e-100 369.8 358 60.1
MBI18_g00544_MAGBIO Magnolia biondii HOM05D004432 ORTHO05D005427 8.6e-99 364.8 365 58.6
Migut.M02008 Erythranthe guttata HOM05D004432 ORTHO05D005427 1.1e-98 364.4 363 57.0
Dinv05655 Davidia involucrata HOM05D004432 ORTHO05D005427 7.3e-98 361.7 363 62.5
Actinidia22430 Actinidia chinensis HOM05D004432 ORTHO05D005427 9.5e-98 361.3 353 58.9
Lsat_1_v5_gn_8_106840 Lactuca sativa HOM05D004432 ORTHO05D005427 2.8e-97 359.8 360 59.7
Cfa001128 Carpinus fangiana HOM05D004432 ORTHO05D005427 4.7e-97 359.0 339 64.3
SGA_v2.0_scaffold298G47706 Striga asiatica HOM05D004432 ORTHO05D005427 6.2e-97 358.6 365 58.4
MSTRG.16369 Avicennia marina HOM05D004432 ORTHO05D005427 1.1e-96 357.8 357 62.7
HanXRQChr09g0257831 Helianthus annuus HOM05D004432 ORTHO05D005427 4.0e-96 355.9 367 58.6
THA.LOC104798567 Tarenaya hassleriana HOM05D004432 ORTHO05D005427 1.7e-94 350.5 396 56.1
Aa31LG6G12370 Aethionema arabicum HOM05D004432 ORTHO05D005427 3.7e-94 349.4 389 56.3
Sopen02g010370 Solanum pennellii HOM05D004432 ORTHO05D005427 3.5e-92 342.8 363 56.5
Sc16g0004480 Simmondsia chinensis HOM05D004432 ORTHO05D005427 4.6e-92 342.4 355 58.9
Eucgr.E04313 Eucalyptus grandis HOM05D004432 ORTHO05D005427 1.7e-91 340.5 369 54.5
AUR62017849 Chenopodium quinoa HOM05D004432 ORTHO05D005427 5.1e-91 339.0 358 60.6
Solyc02g032120.3 Solanum lycopersicum HOM05D004432 ORTHO05D005427 8.6e-91 338.2 363 55.9
AUR62003535 Chenopodium quinoa HOM05D004432 ORTHO05D005427 1.2e-89 334.3 355 59.2
BraA09t39051Z Brassica rapa HOM05D004432 ORTHO05D005427 4.7e-89 332.4 363 62.5
Sp1g26830 Schrenkiella parvula HOM05D004432 ORTHO05D005427 1.1e-88 331.3 356 57.6
QL11p012272 Quercus lobata HOM05D004432 ORTHO05D005427 1.8e-88 330.5 283 67.1
BcaB07g32757 Brassica carinata HOM05D004432 ORTHO05D005427 3.4e-87 326.2 364 53.8
HPP92_024334 Vanilla planifolia HOM05D004432 ORTHO05D005427 4.4e-87 325.9 382 54.7
A09p35240 Brassica napus HOM05D004432 ORTHO05D005427 5.8e-87 325.5 356 62.6
EL10Ac6g15345 Beta vulgaris HOM05D004432 ORTHO05D005427 1.3e-86 324.3 364 59.3
BolC8t48181H Brassica oleracea HOM05D004432 ORTHO05D005427 1.4e-85 320.9 360 56.1
BraA08t33081Z Brassica rapa HOM05D004432 ORTHO05D005427 1.4e-85 320.9 360 58.6
Thhalv10008022m.g Eutrema salsugineum HOM05D004432 ORTHO05D005427 1.9e-85 320.5 361 56.8
HPP92_006155 Vanilla planifolia HOM05D004432 ORTHO05D005427 1.9e-85 320.5 361 52.9
A08p10850 Brassica napus HOM05D004432 ORTHO05D005427 5.4e-85 318.9 361 53.7
BcaC07g37789 Brassica carinata HOM05D004432 ORTHO05D005427 7.1e-85 318.5 361 55.4
BcaB04g18194 Brassica carinata HOM05D004432 ORTHO05D005427 1.2e-84 317.8 362 53.6
BolC5t31752H Brassica oleracea HOM05D004432 ORTHO05D005427 3.5e-84 316.2 364 59.1
BcaC05g27130 Brassica carinata HOM05D004432 ORTHO05D005427 1.3e-83 314.3 363 58.1
C05p30150 Brassica napus HOM05D004432 ORTHO05D005427 1.3e-83 314.3 363 58.1
ATR0568G227 Amborella trichopoda HOM05D004432 ORTHO05D005427 5.1e-83 312.4 374 54.3
Ah.03g147620 Amaranthus hybridus HOM05D004432 ORTHO05D005427 2.1e-81 307.0 346 59.5
Potri.003G074200 Populus trichocarpa HOM05D004432 ORTHO05D005427 8.1e-81 305.1 276 64.9
Os09g0560900 Oryza sativa ssp. japonica HOM05D004432 ORTHO05D005427 4.9e-78 295.8 364 51.6
Hund04373 Selenicereus undatus HOM05D004432 ORTHO05D005427 4.6e-76 289.3 441 45.6
SEGI_00495 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 8.7e-75 285.0 398 45.7
Mapoly0070s0095 Marchantia polymorpha HOM05D004432 ORTHO05D005427 6.9e-72 275.4 383 49.1
CDE01G0579 Ceratophyllum demersum HOM05D007061 ORTHO05D009017 1.5e-71 274.2 311 53.7
AagrBONN_evm.TU.Sc2ySwM_344.4234 Anthoceros agrestis HOM05D004432 ORTHO05D005427 1.4e-69 267.7 395 46.6
TWI32G0924 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 2.4e-69 266.9 295 53.6
TAR629G1033 Trochodendron aralioides HOM05D004432 ORTHO05D005427 4.6e-68 262.7 285 53.7
CiPaw.09G137500 Carya illinoinensis HOM05D004432 ORTHO05D005427 8.1e-65 251.9 154 82.5
vmacro03556 Vaccinium macrocarpon HOM05D004432 ORTHO05D005427 1.8e-64 250.8 465 41.1
Pp3c22_1400 Physcomitrium patens HOM05D004432 ORTHO05D005427 1.2e-63 248.1 393 49.6
Haze_05275 Corylus avellana HOM05D004432 ORTHO05D005427 5.8e-63 245.7 276 57.6
CiPaw.09G137600 Carya illinoinensis HOM05D004432 ORTHO05D005427 1.3e-51 208.0 173 68.8
Haze_05262 Corylus avellana HOM05D004432 ORTHO05D005427 2.3e-51 207.2 98 96.9
Zm00001eb104750 Zea mays HOM05D004432 ORTHO05D005427 5.1e-51 206.1 315 48.9
SEGI_03989 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 8.7e-51 205.3 225 62.2
SMO239G0124 Selaginella moellendorffii HOM05D004432 ORTHO05D005427 3.7e-49 199.9 370 41.1
Rhsim13G0133700 Rhododendron simsii HOM05D004432 ORTHO05D005427 3.1e-48 196.8 99 92.9
RhsimUnG0176700 Rhododendron simsii HOM05D004432 ORTHO05D005427 3.1e-48 196.8 99 92.9
Dinv23013 Davidia involucrata HOM05D004432 ORTHO05D005427 2.7e-44 183.7 234 52.1
CBR_g1074 Chara braunii HOM05D004432 ORTHO05D005427 3.9e-43 179.9 151 62.3
Dinv23014 Davidia involucrata HOM05D004432 ORTHO05D005427 3.7e-41 173.3 93 89.2
SHI20754 Sapria himalayana HOM05D000030 ORTHO05D000009 1.2e-39 168.3 684 28.8
Rhsim13G0133800 Rhododendron simsii HOM05D004432 ORTHO05D005427 2.0e-39 167.5 288 42.4
RhsimUnG0176800 Rhododendron simsii HOM05D004432 ORTHO05D005427 2.0e-39 167.5 288 42.4
CARHR030510 Cardamine hirsuta HOM05D004432 ORTHO05D005427 3.9e-35 153.3 179 55.9
Atru.chr10.360 Acer truncatum HOM05D004432 ORTHO05D005427 9.7e-34 148.7 170 55.3
Nitab4.5_0004903g0050 Nicotiana tabacum HOM05D004432 ORTHO05D005427 7.7e-31 139.0 243 42.0
Sopen12g027920 Solanum pennellii HOM05D004432 ORTHO05D005427 1.0e-27 128.6 71 81.7
Cre06.g305200 Chlamydomonas reinhardtii HOM05D004432 ORTHO05D005427 1.6e-23 114.8 111 50.5
Cfa025961 Carpinus fangiana HOM05D004432 ORTHO05D005427 4.5e-23 113.2 83 57.8
MCO08G042 Micromonas commoda HOM05D004432 ORTHO05D005427 4.5e-23 113.2 159 46.5
SEGI_09071 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 5.0e-22 109.8 83 68.7
GSVIVG01015874001 Vitis vinifera HOM05D004432 ORTHO05D005427 8.5e-22 109.0 65 78.5
Psat6g089360 Pisum sativum HOM05D004432 ORTHO05D005427 1.1e-21 108.6 101 65.3
CAN.G958.2 Capsicum annuum HOM05D004432 ORTHO05D005427 2.5e-21 107.5 76 67.1
Aqoxy1G01395 Aquilegia oxysepala HOM05D004432 ORTHO05D005427 6.1e-20 102.8 374 29.7
Pp3c19_17160 Physcomitrium patens HOM05D004432 ORTHO05D005427 4.1e-16 90.1 133 46.6
Lj1g0003853 Lotus japonicus HOM05D004432 ORTHO05D005427 2.1e-12 77.8 50 78.0
Dinv01000 Davidia involucrata HOM05D004432 ORTHO05D005427 2.3e-11 74.3 187 35.8
Psat7g229080 Pisum sativum HOM05D004432 ORTHO05D005427 1.1e-08 65.5 74 48.6
AUR62036780 Chenopodium quinoa HOM05D056044 ORTHO05D137976 3.8e-06 57.0 36 69.4


User provided reference genes

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