Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G046600 Glycine max HOM05D004997 ORTHO05D005921 3.4e-66 255.0 141 100.0
Glyma.12G006600 Glycine max HOM05D004997 ORTHO05D005921 6.2e-60 234.2 135 94.8
VMungo0251G3606 Vigna mungo HOM05D004997 ORTHO05D005921 3.1e-59 231.9 130 96.9
Phvul.002G321900 Phaseolus vulgaris HOM05D004997 ORTHO05D005921 5.8e-58 227.6 130 93.8
Lalb_Chr05g0222161 Lupinus albus HOM05D004997 ORTHO05D005921 2.9e-57 225.3 127 96.9
Lj5g0010316 Lotus japonicus HOM05D004997 ORTHO05D005921 4.9e-57 224.6 130 93.1
Lj4g0009583 Lotus japonicus HOM05D004997 ORTHO05D005921 8.4e-57 223.8 130 93.1
Psat2g084800 Pisum sativum HOM05D004997 ORTHO05D005921 1.1e-56 223.4 130 91.5
Medtr5g055650 Medicago truncatula HOM05D004997 ORTHO05D005921 3.2e-56 221.9 130 90.8
Dinv32261 Davidia involucrata HOM05D004997 ORTHO05D005921 2.3e-54 215.7 129 89.9
Eucgr.E02397 Eucalyptus grandis HOM05D004997 ORTHO05D005921 1.5e-53 213.0 129 89.1
Solyc08g016420.3 Solanum lycopersicum HOM05D004997 ORTHO05D005921 4.3e-53 211.5 129 86.0
Sopen08g006800 Solanum pennellii HOM05D004997 ORTHO05D005921 4.3e-53 211.5 129 86.0
CSS0020008 Camellia sinensis var. sinensis HOM05D004997 ORTHO05D005921 5.6e-53 211.1 129 88.4
Cfa000953 Carpinus fangiana HOM05D004997 ORTHO05D005921 5.6e-53 211.1 129 89.1
TAR626G0896 Trochodendron aralioides HOM05D004997 ORTHO05D005921 9.6e-53 210.3 129 87.6
Actinidia07691 Actinidia chinensis HOM05D004997 ORTHO05D005921 2.8e-52 208.8 129 87.6
TWI38G0351 Tripterygium wilfordii HOM05D004997 ORTHO05D005921 2.8e-52 208.8 129 86.8
CANSAT35G1260 Cannabis sativa HOM05D004997 ORTHO05D005921 3.6e-52 208.4 134 83.6
AT1G29990 Arabidopsis thaliana HOM05D004997 ORTHO05D005921 6.2e-52 207.6 130 83.1
Potri.004G131900 Populus trichocarpa HOM05D004997 ORTHO05D005921 6.2e-52 207.6 129 86.8
THA.LOC104814295 Tarenaya hassleriana HOM05D004997 ORTHO05D005921 8.1e-52 207.2 129 85.3
MELO3C002717.2 Cucumis melo HOM05D004997 ORTHO05D005921 1.1e-51 206.8 129 87.6
Gorai.011G043400 Gossypium raimondii HOM05D004997 ORTHO05D005921 1.1e-51 206.8 129 86.0
THA.LOC104812669 Tarenaya hassleriana HOM05D004997 ORTHO05D005921 1.1e-51 206.8 129 85.3
Carub.0001s2824 Capsella rubella HOM05D004997 ORTHO05D005921 1.4e-51 206.5 129 83.7
Sed0006544 Sechium edule HOM05D004997 ORTHO05D005921 1.8e-51 206.1 129 86.0
Gohir.A10G040300 Gossypium hirsutum HOM05D004997 ORTHO05D005921 3.1e-51 205.3 129 85.3
TWI38G1166 Tripterygium wilfordii HOM05D004997 ORTHO05D005921 3.1e-51 205.3 127 86.6
CARHR029400 Cardamine hirsuta HOM05D004997 ORTHO05D005921 5.3e-51 204.5 129 84.5
CiPaw.10G092400 Carya illinoinensis HOM05D004997 ORTHO05D005921 5.3e-51 204.5 129 84.5
MD05G1284500 Malus domestica HOM05D004997 ORTHO05D005921 5.3e-51 204.5 133 83.5
Nn4g24866 Nelumbo nucifera HOM05D004997 ORTHO05D005921 5.3e-51 204.5 129 86.0
Thecc.06G151500 Theobroma cacao HOM05D004997 ORTHO05D005921 6.9e-51 204.1 129 85.3
AL1G43880 Arabidopsis lyrata HOM05D004997 ORTHO05D005921 9.0e-51 203.8 129 82.2
MSTRG.16239 Avicennia marina HOM05D004997 ORTHO05D005921 9.0e-51 203.8 135 80.7
SGA_v2.0_scaffold1G00167 Striga asiatica HOM05D004997 ORTHO05D005921 9.0e-51 203.8 125 85.6
ECA233G0220 Erigeron canadensis HOM05D004997 ORTHO05D005921 1.2e-50 203.4 130 83.1
Gohir.D05G151300 Gossypium hirsutum HOM05D004997 ORTHO05D005921 1.2e-50 203.4 129 84.5
Gorai.009G155300 Gossypium raimondii HOM05D004997 ORTHO05D005921 1.2e-50 203.4 129 84.5
PSO339G4484 Papaver somniferum HOM05D004997 ORTHO05D005921 1.2e-50 203.4 129 84.5
Sed0005528 Sechium edule HOM05D004997 ORTHO05D005921 1.2e-50 203.4 129 86.0
MD10G1262900 Malus domestica HOM05D004997 ORTHO05D005921 2.0e-50 202.6 129 84.5
Duzib192G0549 Durio zibethinus HOM05D004997 ORTHO05D005921 2.6e-50 202.2 133 83.5
Migut.M00914 Erythranthe guttata HOM05D004997 ORTHO05D005921 2.6e-50 202.2 124 85.5
Prupe.4G079900 Prunus persica HOM05D004997 ORTHO05D005921 2.6e-50 202.2 129 84.5
Sp1g25870 Schrenkiella parvula HOM05D004997 ORTHO05D005921 2.6e-50 202.2 129 83.7
unitig_32.g11442 Utricularia gibba HOM05D004997 ORTHO05D005921 2.6e-50 202.2 126 84.9
MSTRG.7483 Avicennia marina HOM05D004997 ORTHO05D005921 3.4e-50 201.8 125 85.6
PSO384G3576 Papaver somniferum HOM05D004997 ORTHO05D005921 3.4e-50 201.8 129 83.7
FAN11G3072 Fragaria x ananassa HOM05D004997 ORTHO05D005921 5.8e-50 201.1 129 83.7
Gohir.A05G148700 Gossypium hirsutum HOM05D004997 ORTHO05D005921 5.8e-50 201.1 129 84.5
Gohir.D10G041200 Gossypium hirsutum HOM05D004997 ORTHO05D005921 5.8e-50 201.1 129 84.5
Ciclev10017164m.g Citrus clementina HOM05D004997 ORTHO05D005921 7.6e-50 200.7 129 84.5
HanXRQChr11g0340951 Helianthus annuus HOM05D004997 ORTHO05D005921 7.6e-50 200.7 125 84.8
arahy.Tifrunner.gnm1.ann1.06CE9J Arachis hypogaea HOM05D004997 ORTHO05D005921 9.9e-50 200.3 136 83.1
RcHm_v2.0_Chr5g0013981 Rosa chinensis HOM05D004997 ORTHO05D005921 9.9e-50 200.3 129 83.7
Aqoxy3G00593 Aquilegia oxysepala HOM05D004997 ORTHO05D005921 1.3e-49 199.9 129 81.4
BcaC06g35482 Brassica carinata HOM05D004997 ORTHO05D005921 1.7e-49 199.5 129 82.2
CiPaw.09G124400 Carya illinoinensis HOM05D004997 ORTHO05D005921 1.7e-49 199.5 129 81.4
FvH4_3g05660 Fragaria vesca HOM05D004997 ORTHO05D005921 1.7e-49 199.5 129 82.9
GSVIVG01021444001 Vitis vinifera HOM05D004997 ORTHO05D005921 1.7e-49 199.5 125 83.2
BolC7t42045H Brassica oleracea HOM05D004997 ORTHO05D005921 2.9e-49 198.7 137 77.4
FAN21G2809 Fragaria x ananassa HOM05D004997 ORTHO05D005921 3.8e-49 198.4 129 82.9
TPR.G13287 Trifolium pratense HOM05D004997 ORTHO05D005921 1.4e-48 196.4 112 92.9
Gorai.002G185400 Gossypium raimondii HOM05D004997 ORTHO05D005921 1.9e-48 196.1 132 81.1
SGA_v2.0_scaffold333G48998 Striga asiatica HOM05D004997 ORTHO05D005921 2.4e-48 195.7 138 78.3
Thhalv10009093m.g Eutrema salsugineum HOM05D004997 ORTHO05D005921 3.2e-48 195.3 129 81.4
HanXRQChr01g0020611 Helianthus annuus HOM05D004997 ORTHO05D005921 4.2e-48 194.9 129 82.9
BcaB07g32600 Brassica carinata HOM05D004997 ORTHO05D005921 7.1e-48 194.1 129 79.1
A09p36530 Brassica napus HOM05D004997 ORTHO05D005921 7.1e-48 194.1 129 79.1
BraA09t39174Z Brassica rapa HOM05D004997 ORTHO05D005921 7.1e-48 194.1 129 79.1
C05p28750 Brassica napus HOM05D004997 ORTHO05D005921 2.7e-47 192.2 129 78.3
BolC5t31593H Brassica oleracea HOM05D004997 ORTHO05D005921 2.7e-47 192.2 129 78.3
PGR042G1500 Punica granatum HOM05D004997 ORTHO05D005921 3.9e-46 188.3 135 77.0
BcaB03g13847 Brassica carinata HOM05D004997 ORTHO05D005921 8.7e-46 187.2 129 78.3
CDE09G0791 Ceratophyllum demersum HOM05D004997 ORTHO05D005921 1.5e-45 186.4 127 77.2
FAN25G0101 Fragaria x ananassa HOM05D004997 ORTHO05D005921 2.5e-45 185.7 142 73.2
Manes.11G058500 Manihot esculenta HOM05D004997 ORTHO05D005921 3.3e-45 185.3 111 88.3
A07p10100 Brassica napus HOM05D004997 ORTHO05D005921 1.3e-44 183.3 145 72.4
CDE02G0055 Ceratophyllum demersum HOM05D004997 ORTHO05D005921 1.6e-44 183.0 127 75.6
HPP92_006252 Vanilla planifolia HOM05D004997 ORTHO05D005921 1.6e-44 183.0 129 73.6
Atru.chr10.1243 Acer truncatum HOM05D004997 ORTHO05D005921 2.1e-44 182.6 120 83.3
ClCG03G007080 Citrullus lanatus HOM05D004997 ORTHO05D005921 2.8e-44 182.2 184 60.9
CsaV3_1G032650 Cucumis sativus L. HOM05D004997 ORTHO05D005921 5.3e-43 177.9 111 84.7
Gohir.D01G100600 Gossypium hirsutum HOM05D004997 ORTHO05D005921 5.3e-43 177.9 123 79.7
Ah.09g232610 Amaranthus hybridus HOM05D000413 ORTHO05D000292 9.0e-43 177.2 120 81.7
SEGI_33388 Sequoiadendron giganteum HOM05D004997 ORTHO05D005921 9.0e-43 177.2 130 71.5
Gorai.002G125400 Gossypium raimondii HOM05D004997 ORTHO05D005921 2.6e-42 175.6 123 78.9
CSS0046404 Camellia sinensis var. sinensis HOM05D004997 ORTHO05D005921 3.4e-42 175.3 104 89.4
Lsat_1_v5_gn_1_91801 Lactuca sativa HOM05D004997 ORTHO05D005921 4.5e-42 174.9 106 85.8
Duzib235G0692 Durio zibethinus HOM05D004997 ORTHO05D005921 5.8e-42 174.5 109 85.3
arahy.Tifrunner.gnm1.ann1.FF119L Arachis hypogaea HOM05D004997 ORTHO05D005921 1.0e-41 173.7 116 83.6
Rhsim13G0211800 Rhododendron simsii HOM05D004997 ORTHO05D005921 1.0e-41 173.7 104 88.5
Hund21531 Selenicereus undatus HOM05D004997 ORTHO05D005921 1.0e-41 173.7 107 85.0
DCAR_027919 Daucus carota HOM05D000413 ORTHO05D000292 1.7e-41 172.9 123 78.9
MBI07_g26358_MAGBIO Magnolia biondii HOM05D004997 ORTHO05D005921 1.7e-41 172.9 108 82.4
Prupe.3G104900 Prunus persica HOM05D004997 ORTHO05D005921 1.7e-41 172.9 104 87.5
CAN.G134.135 Capsicum annuum HOM05D004997 ORTHO05D000105 2.9e-41 172.2 121 76.0
Os02g0246300 Oryza sativa ssp. japonica HOM05D004997 ORTHO05D005921 2.9e-41 172.2 128 71.1
Cc02_g37190 Coffea canephora HOM05D004997 ORTHO05D005921 8.4e-41 170.6 104 83.7
BcaC05g27010 Brassica carinata HOM05D004997 ORTHO05D005921 5.5e-40 167.9 111 78.4
BraA07t28803Z Brassica rapa HOM05D004997 ORTHO05D005921 5.5e-40 167.9 140 67.9
CAN.G134.136 Capsicum annuum HOM05D004997 ORTHO05D005921 7.1e-40 167.5 121 74.4
FAN16G0953 Fragaria x ananassa HOM05D004997 ORTHO05D005921 1.3e-38 163.3 104 80.8
QL05p058391 Quercus lobata HOM05D004997 ORTHO05D005921 8.7e-38 160.6 126 72.2
Pp3c22_1770 Physcomitrium patens HOM05D004997 ORTHO05D005921 3.3e-37 158.7 124 65.3
Aa31LG6G5670 Aethionema arabicum HOM05D004997 ORTHO05D005921 4.3e-37 158.3 131 69.5
C07p15580 Brassica napus HOM05D004997 ORTHO05D005921 7.4e-37 157.5 129 67.4
ATR0743G157 Amborella trichopoda HOM05D004997 ORTHO05D005921 1.3e-36 156.8 113 73.5
Mapoly0006s0079 Marchantia polymorpha HOM05D004997 ORTHO05D005921 2.8e-36 155.6 122 64.8
EL10Ac8g19712 Beta vulgaris HOM05D004997 ORTHO05D005921 3.7e-36 155.2 164 57.9
Phvul.009G128800 Phaseolus vulgaris HOM05D004997 ORTHO05D005921 6.3e-36 154.5 87 95.4
AagrBONN_evm.TU.Sc2ySwM_344.2433 Anthoceros agrestis HOM05D004997 ORTHO05D005921 3.1e-35 152.1 124 62.1
arahy.Tifrunner.gnm1.ann1.7IX92P Arachis hypogaea HOM05D004997 ORTHO05D005921 6.9e-35 151.0 89 89.9
PGSC0003DMG400009647 Solanum tuberosum HOM05D004997 ORTHO05D005921 9.0e-35 150.6 90 86.7
vmacro04021 Vaccinium macrocarpon HOM05D004997 ORTHO05D005921 1.2e-34 150.2 87 87.4
Oeu052376.1 Olea europaea HOM05D004997 ORTHO05D005921 1.5e-34 149.8 90 86.7
Oeu034156.1 Olea europaea HOM05D004997 ORTHO05D005921 2.0e-34 149.4 90 86.7
Zm00001eb238610 Zea mays HOM05D004997 ORTHO05D005921 2.6e-34 149.1 129 65.9
COL.COLO4_31081 Corchorus olitorius HOM05D004997 ORTHO05D005921 4.5e-34 148.3 87 86.2
AUR62039776 Chenopodium quinoa HOM05D004997 ORTHO05D005921 5.9e-34 147.9 84 90.5
Dinv30737 Davidia involucrata HOM05D004997 ORTHO05D005921 5.9e-34 147.9 90 87.8
Sc17g0004940 Simmondsia chinensis HOM05D004997 ORTHO05D005921 1.0e-33 147.1 90 86.7
Peaxi162Scf01211g00142 Petunia axillaris HOM05D004997 ORTHO05D005921 6.5e-33 144.4 88 86.4
QL06p022817 Quercus lobata HOM05D004997 ORTHO05D005921 7.2e-32 141.0 111 74.8
SMO367G0874 Selaginella moellendorffii HOM05D004997 ORTHO05D005921 2.1e-31 139.4 107 62.6
Actinidia39569 Actinidia chinensis HOM05D004997 ORTHO05D005921 4.6e-31 138.3 129 65.9
CAN.G3523.1 Capsicum annuum HOM05D004997 ORTHO05D005921 1.8e-30 136.3 90 78.9
CAN.G134.137 Capsicum annuum HOM05D004997 ORTHO05D005921 3.0e-30 135.6 93 76.3
SEGI_19850 Sequoiadendron giganteum HOM05D004997 ORTHO05D005921 2.5e-29 132.5 91 75.8
Gohir.D01G149300 Gossypium hirsutum HOM05D004997 ORTHO05D005921 3.3e-29 132.1 95 76.8
SalBow8G3614 Salvia bowleyana HOM05D004997 ORTHO05D005921 1.8e-27 126.3 100 70.0
Haze_05586 Corylus avellana HOM05D004997 ORTHO05D005921 1.0e-25 120.6 77 84.4
Lsat_1_v5_gn_5_30841 Lactuca sativa HOM05D004997 ORTHO05D005921 2.9e-25 119.0 71 84.5
Nitab4.5_0010327g0020 Nicotiana tabacum HOM05D004997 ORTHO05D005921 4.2e-24 115.2 90 72.2
Nitab4.5_0000348g0240 Nicotiana tabacum HOM05D004997 ORTHO05D005921 9.4e-24 114.0 90 72.2
Sabra04G0085700 Salix brachista HOM05D004997 ORTHO05D005921 3.0e-22 109.0 63 88.9
CDE02G2003 Ceratophyllum demersum HOM05D004997 ORTHO05D005921 3.9e-22 108.6 99 62.6
AUR62030207 Chenopodium quinoa HOM05D004997 ORTHO05D005921 6.7e-22 107.8 61 90.2
PRCOL_00000028 Prasinoderma coloniale HOM05D004997 ORTHO05D005921 2.8e-20 102.4 116 47.4
Zm00001eb258640 Zea mays HOM05D004997 ORTHO05D005921 5.3e-19 98.2 67 73.1
Manes.09G021201 Manihot esculenta HOM05D004997 ORTHO05D005921 9.1e-19 97.4 109 56.9
Zm00001eb151600 Zea mays HOM05D000394 ORTHO05D016690 1.5e-18 96.7 64 75.0
Zm00001eb310800 Zea mays HOM05D000394 ORTHO05D016690 4.5e-18 95.1 64 73.4
Zm00001eb139040 Zea mays HOM05D000901 ORTHO05D005921 5.9e-18 94.7 87 60.9
MCO01G210 Micromonas commoda HOM05D004997 ORTHO05D005921 7.7e-18 94.4 116 42.2
Zm00001eb225310 Zea mays HOM05D000901 ORTHO05D005921 1.7e-17 93.2 66 71.2
Zm00001eb269380 Zea mays HOM05D000901 ORTHO05D005921 5.0e-17 91.7 65 72.3
Zm00001eb344510 Zea mays HOM05D000901 ORTHO05D000768 4.2e-16 88.6 68 66.2
Haze_05599 Corylus avellana HOM05D004997 ORTHO05D005921 1.0e-14 84.0 51 86.3
Cre12.g502750 Chlamydomonas reinhardtii HOM05D004997 ORTHO05D005921 1.4e-14 83.6 121 39.7
Cfa022129 Carpinus fangiana HOM05D004997 ORTHO05D005921 5.3e-11 71.6 120 35.0
arahy.Tifrunner.gnm1.ann1.MPJ1GQ Arachis hypogaea HOM05D004997 ORTHO05D005921 1.9e-08 63.2 51 68.6
CBR_g48714 Chara braunii HOM05D004997 ORTHO05D005921 1.6e-07 60.1 119 35.3


User provided reference genes

Program Settings