Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G039000 Glycine max HOM05D008067 ORTHO05D010226 7.9e-32 139.8 70 100.0
Glyma.05G231500 Glycine max HOM05D008067 ORTHO05D010226 1.3e-26 122.5 70 90.0
TPR.G21702 Trifolium pratense HOM05D008067 ORTHO05D010226 3.9e-15 84.3 75 66.7
Psat7g013560 Pisum sativum HOM05D008067 ORTHO05D010226 3.3e-14 81.3 69 65.2
TPR.G23486 Trifolium pratense HOM05D008067 ORTHO05D010226 2.2e-13 78.6 75 64.0
Lj2g0013738 Lotus japonicus HOM05D008067 ORTHO05D010226 1.1e-12 76.3 64 62.5
Phvul.002G313700 Phaseolus vulgaris HOM05D008067 ORTHO05D010226 1.1e-12 76.3 70 61.4
Lj2g0025160 Lotus japonicus HOM05D008067 ORTHO05D010226 1.4e-12 75.9 64 62.5
QL02p085507 Quercus lobata HOM05D008067 ORTHO05D010226 1.8e-12 75.5 57 61.4
Glyma.09G190000 Glycine max HOM05D008067 ORTHO05D010226 3.1e-12 74.7 69 60.9
TPR.G35272 Trifolium pratense HOM05D003111 ORTHO05D003502 3.1e-12 74.7 74 59.5
Lj2g0022306 Lotus japonicus HOM05D008067 ORTHO05D010226 4.1e-12 74.3 64 62.5
Lalb_Chr05g0222841 Lupinus albus HOM05D008067 ORTHO05D010226 4.1e-12 74.3 70 57.1
Medtr8g083450 Medicago truncatula HOM05D008067 ORTHO05D010226 4.1e-12 74.3 55 67.3
Lj2g0006280 Lotus japonicus HOM05D008067 ORTHO05D010226 5.3e-12 73.9 64 60.9
Phvul.004G162800 Phaseolus vulgaris HOM05D008067 ORTHO05D010226 2.0e-11 72.0 71 57.7
Psat1g041240 Pisum sativum HOM05D008067 ORTHO05D010226 2.6e-11 71.6 70 57.1
Glyma.07G086900 Glycine max HOM05D008067 ORTHO05D010226 3.5e-11 71.2 67 61.2
Medtr6g086485 Medicago truncatula HOM05D008067 ORTHO05D010226 4.5e-11 70.9 78 57.7
CSS0009961 Camellia sinensis var. sinensis HOM05D008067 ORTHO05D010226 5.9e-11 70.5 60 65.0
CSS0037112 Camellia sinensis var. sinensis HOM05D008067 ORTHO05D010226 5.9e-11 70.5 60 65.0
Lj4g0026171 Lotus japonicus HOM05D008067 ORTHO05D010226 2.2e-10 68.6 64 60.9
Cfa003263 Carpinus fangiana HOM05D008067 ORTHO05D010226 2.9e-10 68.2 60 58.3
Ciclev10010044m.g Citrus clementina HOM05D008067 ORTHO05D010226 6.5e-10 67.0 49 65.3
Potri.018G079200 Populus trichocarpa HOM05D008067 ORTHO05D010226 8.5e-10 66.6 62 56.5
MD02G1048100 Malus domestica HOM05D008067 ORTHO05D010226 1.1e-09 66.2 66 57.6
Manes.03G019700 Manihot esculenta HOM05D008067 ORTHO05D010226 1.9e-09 65.5 63 61.9
TAR624G0725 Trochodendron aralioides HOM05D008067 ORTHO05D010226 2.5e-09 65.1 60 55.0
RhsimUnG0085400 Rhododendron simsii HOM05D008067 ORTHO05D010226 3.2e-09 64.7 59 55.9
CiPaw.04G164800 Carya illinoinensis HOM05D008067 ORTHO05D010226 4.2e-09 64.3 61 59.0
Lalb_Chr22g0352831 Lupinus albus HOM05D008067 ORTHO05D010226 4.2e-09 64.3 76 57.9
Nitab4.5_0003537g0010 Nicotiana tabacum HOM05D008067 ORTHO05D010226 7.2e-09 63.5 58 50.0
Haze_25708 Corylus avellana HOM05D008067 ORTHO05D010226 1.2e-08 62.8 60 55.0
SHI02746 Sapria himalayana HOM05D008067 ORTHO05D010226 1.2e-08 62.8 42 66.7
ClCG11G002490 Citrullus lanatus HOM05D008067 ORTHO05D010226 2.7e-08 61.6 71 50.7
Sed0012648 Sechium edule HOM05D008067 ORTHO05D010226 2.7e-08 61.6 58 56.9
FvH4_1g04950 Fragaria vesca HOM05D008067 ORTHO05D010226 4.7e-08 60.8 63 50.8
Peaxi162Scf00560g00114 Petunia axillaris HOM05D008067 ORTHO05D010226 4.7e-08 60.8 63 47.6
Thecc.09G111500 Theobroma cacao HOM05D008067 ORTHO05D010226 4.7e-08 60.8 60 53.3
Atru.chr7.1341 Acer truncatum HOM05D008067 ORTHO05D010226 8.0e-08 60.1 58 56.9
COL.COLO4_34910 Corchorus olitorius HOM05D008067 ORTHO05D010226 8.0e-08 60.1 64 51.6
FAN23G0784 Fragaria x ananassa HOM05D008067 ORTHO05D010226 8.0e-08 60.1 72 48.6
Prupe.7G230000 Prunus persica HOM05D008067 ORTHO05D010226 1.4e-07 59.3 68 55.9
Nn8g39208 Nelumbo nucifera HOM05D008067 ORTHO05D010226 1.8e-07 58.9 50 56.0
MELO3C004555.2 Cucumis melo HOM05D008067 ORTHO05D010226 3.0e-07 58.2 68 47.1
CsaV3_2G002290 Cucumis sativus L. HOM05D008067 ORTHO05D010226 4.0e-07 57.8 68 45.6
FAN28G1234 Fragaria x ananassa HOM05D008067 ORTHO05D010226 5.2e-07 57.4 62 48.4
HPP92_010803 Vanilla planifolia HOM05D008067 ORTHO05D010226 5.2e-07 57.4 67 47.8
CiPaw.03G232800 Carya illinoinensis HOM05D008067 ORTHO05D010226 1.2e-06 56.2 74 51.4
Sed0011788 Sechium edule HOM05D008067 ORTHO05D010226 1.2e-06 56.2 72 45.8
DCAR_028716 Daucus carota HOM05D008067 ORTHO05D010226 2.0e-06 55.5 48 56.2
Nn2g11761 Nelumbo nucifera HOM05D008067 ORTHO05D010226 2.0e-06 55.5 49 49.0
TAR636G2707 Trochodendron aralioides HOM05D003111 ORTHO05D003502 2.0e-06 55.5 61 49.2
Gohir.A07G006600 Gossypium hirsutum HOM05D008067 ORTHO05D010226 2.6e-06 55.1 49 59.2
Gohir.D07G005400 Gossypium hirsutum HOM05D008067 ORTHO05D010226 2.6e-06 55.1 49 59.2
Gorai.001G004900 Gossypium raimondii HOM05D008067 ORTHO05D010226 2.6e-06 55.1 49 59.2
RcHm_v2.0_Chr2g0090561 Rosa chinensis HOM05D008067 ORTHO05D010226 2.6e-06 55.1 64 48.4
Solyc12g007060.1 Solanum lycopersicum HOM05D008067 ORTHO05D010226 3.3e-06 54.7 72 44.4
Sopen12g003050 Solanum pennellii HOM05D008067 ORTHO05D010226 3.3e-06 54.7 72 44.4
PGSC0003DMG400000315 Solanum tuberosum HOM05D008067 ORTHO05D010226 4.4e-06 54.3 72 44.4
EL10Ac8g18505 Beta vulgaris HOM05D008067 ORTHO05D010226 9.7e-06 53.1 55 54.5
Gohir.D06G060201 Gossypium hirsutum HOM05D008067 ORTHO05D010226 9.7e-06 53.1 60 50.0
Gorai.010G070100 Gossypium raimondii HOM05D008067 ORTHO05D010226 9.7e-06 53.1 59 50.8


User provided reference genes

Program Settings