Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G035500 Glycine max HOM05D004971 ORTHO05D006289 5.5e-161 570.9 277 100.0
VMungo0251G3379 Vigna mungo HOM05D004971 ORTHO05D006289 3.4e-142 508.4 277 87.7
Phvul.002G310900 Phaseolus vulgaris HOM05D004971 ORTHO05D006289 4.5e-139 498.0 277 86.6
Lalb_Chr05g0223101 Lupinus albus HOM05D004971 ORTHO05D006289 7.5e-134 480.7 269 85.5
TPR.G23453 Trifolium pratense HOM05D004971 ORTHO05D006289 1.8e-124 449.5 274 81.0
Lj4g0001585 Lotus japonicus HOM05D004971 ORTHO05D006289 7.8e-123 444.1 267 80.1
Medtr8g102950 Medicago truncatula HOM05D004971 ORTHO05D006289 7.8e-123 444.1 283 77.0
arahy.Tifrunner.gnm1.ann1.050WC1 Arachis hypogaea HOM05D004971 ORTHO05D006289 1.9e-121 439.5 285 75.4
arahy.Tifrunner.gnm1.ann1.R8N6MQ Arachis hypogaea HOM05D004971 ORTHO05D006289 2.0e-115 419.5 285 73.0
Psat7g014440 Pisum sativum HOM05D004971 ORTHO05D006289 3.9e-114 415.2 259 76.4
CANSAT56G2306 Cannabis sativa HOM05D004971 ORTHO05D006289 1.7e-106 389.8 273 66.7
Atru.chr7.1418 Acer truncatum HOM05D004971 ORTHO05D006289 1.5e-105 386.7 277 67.5
CiPaw.03G227700 Carya illinoinensis HOM05D004971 ORTHO05D006289 2.5e-105 386.0 268 69.0
RcHm_v2.0_Chr2g0091361 Rosa chinensis HOM05D004971 ORTHO05D006289 3.3e-105 385.6 270 67.0
CANSAT56G1645 Cannabis sativa HOM05D004971 ORTHO05D006289 9.5e-105 384.0 273 65.9
Prupe.7G224700 Prunus persica HOM05D004971 ORTHO05D006289 2.3e-103 379.4 273 64.5
FvH4_1g05710 Fragaria vesca HOM05D004971 ORTHO05D006289 5.4e-100 368.2 266 64.3
Thecc.09G104800 Theobroma cacao HOM05D004971 ORTHO05D006289 5.4e-100 368.2 279 63.1
FAN23G0317 Fragaria x ananassa HOM05D001382 ORTHO05D006289 7.1e-100 367.9 267 64.4
QL01p004043 Quercus lobata HOM05D004971 ORTHO05D006289 9.2e-100 367.5 277 66.4
FAN26G3039 Fragaria x ananassa HOM05D001382 ORTHO05D001266 1.6e-99 366.7 265 64.9
FAN28G1806 Fragaria x ananassa HOM05D001382 ORTHO05D006289 1.6e-99 366.7 265 64.9
Sabra18G0073100 Salix brachista HOM05D004971 ORTHO05D006289 6.0e-99 364.8 268 63.8
ClCG06G008900 Citrullus lanatus HOM05D004971 ORTHO05D006289 7.8e-99 364.4 273 66.7
GSVIVG01015340001 Vitis vinifera HOM05D004971 ORTHO05D006289 2.3e-98 362.8 273 63.0
Dinv41645 Davidia involucrata HOM05D004971 ORTHO05D006289 8.6e-98 360.9 268 63.4
Eucgr.C03795 Eucalyptus grandis HOM05D004971 ORTHO05D006289 8.6e-98 360.9 274 59.5
Potri.018G084700 Populus trichocarpa HOM05D004971 ORTHO05D006289 1.1e-97 360.5 275 61.8
FAN19G1252 Fragaria x ananassa HOM05D001382 ORTHO05D001266 1.5e-97 360.1 265 63.8
MD15G1192600 Malus domestica HOM05D004971 ORTHO05D006289 1.9e-97 359.8 271 63.5
Carub.0008s1117 Capsella rubella HOM05D004971 ORTHO05D006289 9.6e-97 357.5 273 61.5
CSS0031404 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 2.1e-96 356.3 275 64.0
AT5G51130 Arabidopsis thaliana HOM05D004971 ORTHO05D006289 3.6e-96 355.5 269 61.7
CARHR256940 Cardamine hirsuta HOM05D004971 ORTHO05D006289 8.1e-96 354.4 271 62.7
AL8G25390 Arabidopsis lyrata HOM05D004971 ORTHO05D006289 8.9e-95 350.9 273 60.1
Nn3g18146 Nelumbo nucifera HOM05D004971 ORTHO05D006289 9.9e-94 347.4 274 59.5
THA.LOC104811095 Tarenaya hassleriana HOM05D004971 ORTHO05D006289 9.9e-94 347.4 269 61.3
Thhalv10014188m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 8.4e-93 344.4 266 60.9
Aa31LG3G7640 Aethionema arabicum HOM05D004971 ORTHO05D006289 1.1e-92 344.0 271 59.8
Gorai.001G007500 Gossypium raimondii HOM05D004971 ORTHO05D006289 1.6e-91 340.1 284 58.5
PGR102G0147 Punica granatum HOM05D004971 ORTHO05D006289 1.6e-91 340.1 254 61.4
Nitab4.5_0000066g0130 Nicotiana tabacum HOM05D004971 ORTHO05D006289 2.7e-91 339.3 270 60.0
ECA240G1764 Erigeron canadensis HOM05D004971 ORTHO05D006289 3.5e-91 339.0 281 59.4
Gohir.D07G007800 Gossypium hirsutum HOM05D004971 ORTHO05D006289 3.5e-91 339.0 284 58.5
TWI12G1172 Tripterygium wilfordii HOM05D004971 ORTHO05D006289 6.0e-91 338.2 269 60.6
Nitab4.5_0003331g0010 Nicotiana tabacum HOM05D004971 ORTHO05D006289 7.8e-91 337.8 268 60.1
Gohir.A07G004400 Gossypium hirsutum HOM05D004971 ORTHO05D006289 1.0e-90 337.4 278 58.3
Sp6g13340 Schrenkiella parvula HOM05D004971 ORTHO05D006289 2.3e-90 336.3 267 60.7
BcaC01g06076 Brassica carinata HOM05D004971 ORTHO05D006289 5.1e-90 335.1 262 61.8
BraA03t10920Z Brassica rapa HOM05D004971 ORTHO05D006289 5.1e-90 335.1 263 61.6
TAR636G2606 Trochodendron aralioides HOM05D004971 ORTHO05D006289 8.7e-90 334.3 278 58.3
TAR626G1908 Trochodendron aralioides HOM05D001382 ORTHO05D006289 1.1e-89 334.0 278 58.3
A02p12480 Brassica napus HOM05D004971 ORTHO05D006289 1.9e-89 333.2 268 61.6
BraA02t06311Z Brassica rapa HOM05D004971 ORTHO05D006289 1.9e-89 333.2 268 61.6
BcaB05g24018 Brassica carinata HOM05D004971 ORTHO05D006289 2.5e-89 332.8 266 61.3
BcaC03g14623 Brassica carinata HOM05D004971 ORTHO05D006289 2.5e-89 332.8 266 60.9
BolC2t08195H Brassica oleracea HOM05D004971 ORTHO05D006289 2.5e-89 332.8 266 60.9
COL.COLO4_34800 Corchorus olitorius HOM05D004971 ORTHO05D006289 5.6e-89 331.6 244 63.9
Rhsim03G0239000 Rhododendron simsii HOM05D004971 ORTHO05D006289 9.6e-89 330.9 268 60.4
Sopen05g028390 Solanum pennellii HOM05D004971 ORTHO05D006289 9.6e-89 330.9 268 60.1
Migut.J01131 Erythranthe guttata HOM05D004971 ORTHO05D006289 1.3e-88 330.5 269 60.2
C03p19180 Brassica napus HOM05D004971 ORTHO05D006289 1.6e-88 330.1 282 58.9
MSTRG.19566 Avicennia marina HOM05D004971 ORTHO05D006289 2.1e-88 329.7 275 57.8
C02p20580 Brassica napus HOM05D004971 ORTHO05D006289 2.8e-88 329.3 266 60.5
A03p16290 Brassica napus HOM05D004971 ORTHO05D006289 4.8e-88 328.6 262 59.9
Solyc05g050000.3 Solanum lycopersicum HOM05D004971 ORTHO05D006289 4.8e-88 328.6 269 59.5
HanXRQChr09g0239411 Helianthus annuus HOM05D004971 ORTHO05D006289 8.1e-88 327.8 279 58.8
Lsat_1_v5_gn_7_41360 Lactuca sativa HOM05D004971 ORTHO05D006289 8.1e-88 327.8 269 56.9
Oeu000366.2 Olea europaea HOM05D004971 ORTHO05D006289 1.1e-87 327.4 296 56.4
BcaC01g06098 Brassica carinata HOM05D004971 ORTHO05D006289 2.4e-87 326.2 263 60.8
BolC3t14306H Brassica oleracea HOM05D004971 ORTHO05D006289 2.4e-87 326.2 263 60.8
AUR62021639 Chenopodium quinoa HOM05D004971 ORTHO05D006289 1.7e-85 320.1 273 57.1
SGA_v2.0_scaffold22G09903 Striga asiatica HOM05D004971 ORTHO05D006289 2.2e-85 319.7 278 58.6
CsaV3_1G020790 Cucumis sativus L. HOM05D004971 ORTHO05D006289 3.8e-85 318.9 272 59.9
Cc06_g10130 Coffea canephora HOM05D004971 ORTHO05D006289 8.4e-85 317.8 266 58.3
SGA_v2.0_scaffold20G09148 Striga asiatica HOM05D004971 ORTHO05D006289 1.9e-84 316.6 275 57.8
unitig_748.g8739 Utricularia gibba HOM05D004971 ORTHO05D006289 2.1e-83 313.2 271 57.6
Actinidia32663 Actinidia chinensis HOM05D004971 ORTHO05D006289 4.6e-83 312.0 275 57.5
Os08g0540500 Oryza sativa ssp. japonica HOM05D004971 ORTHO05D006289 1.0e-82 310.8 264 55.3
Sc08g0007770 Simmondsia chinensis HOM05D004971 ORTHO05D006289 1.7e-82 310.1 275 56.0
MELO3C024707.2 Cucumis melo HOM05D004971 ORTHO05D006289 3.0e-82 309.3 269 59.9
Ciclev10009268m.g Citrus clementina HOM05D004971 ORTHO05D006289 6.6e-82 308.1 277 56.7
PSO675G4950 Papaver somniferum HOM05D004971 ORTHO05D006289 6.6e-82 308.1 281 54.8
Peaxi162Scf00539g00614 Petunia axillaris HOM05D004971 ORTHO05D006289 1.1e-81 307.4 272 56.6
Sed0000382 Sechium edule HOM05D004971 ORTHO05D006289 1.9e-81 306.6 248 61.7
PGSC0003DMG400021659 Solanum tuberosum HOM05D004971 ORTHO05D006289 1.9e-81 306.6 253 59.3
PSO541G6366 Papaver somniferum HOM05D004971 ORTHO05D006289 7.4e-81 304.7 281 53.7
Cfa003218 Carpinus fangiana HOM05D001382 ORTHO05D001266 9.6e-81 304.3 222 64.9
HanXRQChr03g0061421 Helianthus annuus HOM05D004971 ORTHO05D006289 2.1e-80 303.1 254 58.7
Aqoxy7G01513 Aquilegia oxysepala HOM05D004971 ORTHO05D006289 2.8e-80 302.8 278 54.3
CAN.G399.3 Capsicum annuum HOM05D004971 ORTHO05D006289 1.1e-79 300.8 252 59.9
Hund26242 Selenicereus undatus HOM05D004971 ORTHO05D006289 1.4e-79 300.4 275 52.7
HPP92_012921 Vanilla planifolia HOM05D004971 ORTHO05D006289 1.2e-78 297.4 278 52.9
Lj7A659G31 Lonicera japonica HOM05D004971 ORTHO05D006289 1.3e-77 293.9 252 57.9
Manes.16G112100 Manihot esculenta HOM05D004971 ORTHO05D006289 3.8e-77 292.4 213 64.3
Oeu017816.1 Olea europaea HOM05D004971 ORTHO05D006289 3.2e-76 289.3 244 58.2
HPP92_012900 Vanilla planifolia HOM05D004971 ORTHO05D006289 4.2e-76 288.9 278 51.4
vmacro06238 Vaccinium macrocarpon HOM05D004971 ORTHO05D006289 7.9e-75 284.6 305 50.2
AUR62008451 Chenopodium quinoa HOM05D004971 ORTHO05D006289 1.3e-74 283.9 251 56.2
SHI02711 Sapria himalayana HOM05D004971 ORTHO05D006289 3.9e-74 282.3 272 52.2
AagrBONN_evm.TU.Sc2ySwM_117.3390 Anthoceros agrestis HOM05D004971 ORTHO05D006289 5.3e-71 271.9 264 52.7
DCAR_028679 Daucus carota HOM05D004971 ORTHO05D006289 7.6e-70 268.1 273 52.7
SEGI_33858 Sequoiadendron giganteum HOM05D004971 ORTHO05D006289 9.3e-68 261.2 339 41.6
Lalb_Chr14g0371731 Lupinus albus HOM05D004971 ORTHO05D006289 2.7e-67 259.6 257 51.8
SMO232G0003 Selaginella moellendorffii HOM05D004971 ORTHO05D006289 2.7e-67 259.6 276 46.4
CDE11G0552 Ceratophyllum demersum HOM05D004971 ORTHO05D006289 1.5e-65 253.8 276 48.6
SMO241G0030 Selaginella moellendorffii HOM05D004971 ORTHO05D006289 2.5e-65 253.1 286 45.1
Duzib150G1337 Durio zibethinus HOM05D004971 ORTHO05D006289 4.1e-63 245.7 194 61.3
Mapoly0002s0233 Marchantia polymorpha HOM05D004971 ORTHO05D006289 2.0e-62 243.4 305 41.3
CSS0049746 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 1.9e-60 236.9 197 61.9
Thhalv10006518m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 3.6e-59 232.6 220 54.1
Thhalv10027230m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 3.6e-59 232.6 220 54.1
Ca_17315_v3 Cicer arietinum L. HOM05D004971 ORTHO05D006289 3.0e-58 229.6 171 69.6
Pp3c17_15270 Physcomitrium patens HOM05D004971 ORTHO05D006289 1.9e-57 226.9 282 40.1
Thhalv10026861m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 7.4e-57 224.9 220 52.7
Thhalv10027410m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 2.8e-56 223.0 220 52.3
Nitab4.5_0002165g0080 Nicotiana tabacum HOM05D004971 ORTHO05D006289 3.7e-56 222.6 275 44.7
Thhalv10027350m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 8.2e-56 221.5 222 51.4
Lalb_Chr24g0397391 Lupinus albus HOM05D004971 ORTHO05D006289 5.1e-50 202.2 195 51.8
ATR0315G075 Amborella trichopoda HOM05D004971 ORTHO05D006289 2.6e-49 199.9 212 49.5
MD02G1058100 Malus domestica HOM05D004971 ORTHO05D006289 2.2e-48 196.8 250 44.0
CDE05G3470 Ceratophyllum demersum HOM05D004971 ORTHO05D006289 1.1e-44 184.5 123 69.9
CBR_g687 Chara braunii HOM05D004971 ORTHO05D006289 7.4e-41 171.8 426 27.7
MCO09G154 Micromonas commoda HOM05D004971 ORTHO05D006289 3.7e-40 169.5 292 33.9
Zm00001eb198370 Zea mays HOM05D004971 ORTHO05D006289 2.0e-38 163.7 163 50.9
Haze_02526 Corylus avellana HOM05D004971 ORTHO05D006289 2.6e-38 163.3 137 59.9
EL10Ac8g18422 Beta vulgaris HOM05D004971 ORTHO05D006289 1.1e-36 157.9 132 59.8
PRCOL_00000240 Prasinoderma coloniale HOM05D004971 ORTHO05D006289 8.8e-34 148.3 319 32.6
Lj4g0009518 Lotus japonicus HOM05D004971 ORTHO05D006289 4.4e-33 146.0 76 86.8
MBI04_g02609_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D000022 2.8e-32 143.3 351 30.2
Haze_02523 Corylus avellana HOM05D004971 ORTHO05D006289 4.1e-31 139.4 150 51.3
Cre15.g636450 Chlamydomonas reinhardtii HOM05D004971 ORTHO05D006289 5.9e-30 135.6 392 25.8
arahy.Tifrunner.gnm1.ann1.D57MTL Arachis hypogaea HOM05D004971 ORTHO05D006289 1.7e-29 134.0 155 45.2
arahy.Tifrunner.gnm1.ann1.2J0XRF Arachis hypogaea HOM05D004971 ORTHO05D006289 3.2e-28 129.8 155 44.5
Lalb_Chr24g0397371 Lupinus albus HOM05D004971 ORTHO05D006289 2.0e-25 120.6 144 47.9
CSS0032398 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 2.5e-20 103.6 62 71.0
Cpa.g.sc40.24 Carica papaya HOM05D004971 ORTHO05D006289 9.5e-20 101.7 53 75.5
MBI19_g42779_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D006289 2.1e-19 100.5 165 34.5
Nitab4.5_0002165g0090 Nicotiana tabacum HOM05D004971 ORTHO05D006289 9.8e-17 91.7 57 66.7
MBI19_g24589_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D006289 8.3e-16 88.6 194 32.0
Actinidia07401 Actinidia chinensis HOM05D004971 ORTHO05D006289 3.5e-14 83.2 56 67.9
Nitab4.5_0001706g0070 Nicotiana tabacum HOM05D004971 ORTHO05D006289 1.7e-13 80.9 107 43.0
FvH4_7g02600 Fragaria vesca HOM05D004971 ORTHO05D022553 9.8e-09 65.1 40 67.5
FvH4_7g02480 Fragaria vesca HOM05D004971 ORTHO05D022553 2.9e-08 63.5 38 68.4
MBI19_g24592_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D006289 3.7e-08 63.2 38 71.1
arahy.Tifrunner.gnm1.ann1.C3C3ER Arachis hypogaea HOM05D004971 ORTHO05D082689 2.0e-06 57.4 73 49.3
Haze_02522 Corylus avellana HOM05D004971 ORTHO05D006289 2.0e-06 57.4 89 37.1
Nitab4.5_0001706g0080 Nicotiana tabacum HOM05D004971 ORTHO05D006289 7.8e-06 55.5 29 72.4


User provided reference genes

Program Settings