Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G026000 Glycine max HOM05D003086 ORTHO05D003347 5.6e-28 127.5 97 100.0
Glyma.05G219700 Glycine max HOM05D003086 ORTHO05D003347 2.4e-23 112.1 97 89.7
Lalb_Chr05g0223911 Lupinus albus HOM05D003086 ORTHO05D003347 6.5e-16 87.4 94 80.9
Phvul.002G328908 Phaseolus vulgaris HOM05D003086 ORTHO05D003347 8.4e-16 87.0 97 81.4
Psat7g022720 Pisum sativum HOM05D003086 ORTHO05D003347 3.2e-15 85.1 47 87.2
Lj4g0018385 Lotus japonicus HOM05D003086 ORTHO05D003347 6.0e-14 80.9 45 88.9
Haze_09122 Corylus avellana HOM05D003086 ORTHO05D003347 1.1e-12 76.6 49 75.5
Medtr8g099965 Medicago truncatula HOM05D003086 ORTHO05D003347 1.5e-12 76.3 45 80.0
CiPaw.12G080100 Carya illinoinensis HOM05D003086 ORTHO05D003347 9.7e-12 73.6 47 72.3
QL02p028382 Quercus lobata HOM05D003086 ORTHO05D003347 1.3e-11 73.2 46 73.9
FAN08G3604 Fragaria x ananassa HOM05D003086 ORTHO05D003347 1.1e-10 70.1 46 73.9
FAN13G3255 Fragaria x ananassa HOM05D003086 ORTHO05D003347 1.1e-10 70.1 46 73.9
FAN18G2695 Fragaria x ananassa HOM05D003086 ORTHO05D003347 1.1e-10 70.1 46 73.9
Lalb_Chr09g0332101 Lupinus albus HOM05D003086 ORTHO05D003347 1.8e-10 69.3 94 75.5
Prupe.5G126200 Prunus persica HOM05D003086 ORTHO05D003347 3.1e-10 68.6 49 69.4
MD14G1134500 Malus domestica HOM05D003086 ORTHO05D003347 4.1e-10 68.2 47 68.1
Sed0015662 Sechium edule HOM05D003086 ORTHO05D003347 4.1e-10 68.2 52 69.2
MELO3C005750.2 Cucumis melo HOM05D003086 ORTHO05D003347 5.3e-10 67.8 51 66.7
ClCG01G001890 Citrullus lanatus HOM05D003086 ORTHO05D003347 6.9e-10 67.4 51 64.7
MD06G1113400 Malus domestica HOM05D003086 ORTHO05D003347 6.9e-10 67.4 46 69.6
TPR.G3409 Trifolium pratense HOM05D003086 ORTHO05D003347 6.9e-10 67.4 49 75.5
FAN04G2505 Fragaria x ananassa HOM05D003086 ORTHO05D003347 9.0e-10 67.0 46 71.7
Gohir.A08G111400 Gossypium hirsutum HOM05D003086 ORTHO05D003347 1.5e-09 66.2 46 63.0
Gohir.D08G124400 Gossypium hirsutum HOM05D003086 ORTHO05D003347 1.5e-09 66.2 46 63.0
Gorai.004G131100 Gossypium raimondii HOM05D003086 ORTHO05D003347 1.5e-09 66.2 46 63.0
FvH4_5g11470 Fragaria vesca HOM05D003086 ORTHO05D003347 2.6e-09 65.5 42 76.2
TWI60G1451 Tripterygium wilfordii HOM05D003086 ORTHO05D003347 2.6e-09 65.5 45 66.7
Manes.02G005600 Manihot esculenta HOM05D003086 ORTHO05D003347 3.4e-09 65.1 95 41.1
Thecc.03G304600 Theobroma cacao HOM05D003086 ORTHO05D003347 4.5e-09 64.7 46 63.0
CANSAT21G1677 Cannabis sativa HOM05D003086 ORTHO05D003347 5.9e-09 64.3 94 59.6
CiPaw.11G115700 Carya illinoinensis HOM05D003086 ORTHO05D003347 5.9e-09 64.3 46 60.9
CsaV3_5G002030 Cucumis sativus L. HOM05D003086 ORTHO05D003347 5.9e-09 64.3 51 62.7
Manes.01G053400 Manihot esculenta HOM05D003086 ORTHO05D003347 5.9e-09 64.3 44 65.9
RcHm_v2.0_Chr7g0186341 Rosa chinensis HOM05D003086 ORTHO05D003347 5.9e-09 64.3 43 72.1
Thecc.03G304300 Theobroma cacao HOM05D003086 ORTHO05D003347 7.6e-09 63.9 46 63.0
COL.COLO4_10758 Corchorus olitorius HOM05D003086 ORTHO05D003347 1.0e-08 63.5 48 62.5
Potri.001G087200 Populus trichocarpa HOM05D003086 ORTHO05D003347 1.3e-08 63.2 94 40.4
Cfa003782 Carpinus fangiana HOM05D003086 ORTHO05D003347 1.7e-08 62.8 48 60.4
Haze_15678 Corylus avellana HOM05D003086 ORTHO05D003347 1.7e-08 62.8 48 60.4
QL09p037005 Quercus lobata HOM05D003086 ORTHO05D003347 3.8e-08 61.6 48 62.5
CiPaw.05G227500 Carya illinoinensis HOM05D003086 ORTHO05D003347 5.0e-08 61.2 48 58.3
SHI06941 Sapria himalayana HOM05D003472 ORTHO05D004200 5.0e-08 61.2 43 67.4
Cpa.g.sc1802.1 Carica papaya HOM05D003086 ORTHO05D003347 6.5e-08 60.8 51 62.7
ECA233G0233 Erigeron canadensis HOM05D003086 ORTHO05D003347 8.5e-08 60.5 46 58.7
PGR042G2701 Punica granatum HOM05D003086 ORTHO05D003347 8.5e-08 60.5 48 62.5
Sabra01G0063400 Salix brachista HOM05D003086 ORTHO05D003347 1.1e-07 60.1 46 60.9
Sed0027058 Sechium edule HOM05D003086 ORTHO05D003347 1.4e-07 59.7 41 65.9
HanXRQChr08g0225161 Helianthus annuus HOM05D003086 ORTHO05D003347 1.9e-07 59.3 41 68.3
BcaC05g27913 Brassica carinata HOM05D003086 ORTHO05D003347 2.5e-07 58.9 42 69.0
C05p39210 Brassica napus HOM05D003086 ORTHO05D003347 2.5e-07 58.9 42 69.0
C09p35950 Brassica napus HOM05D003086 ORTHO05D003347 2.5e-07 58.9 42 69.0
BolC5t32654H Brassica oleracea HOM05D003086 ORTHO05D003347 2.5e-07 58.9 42 69.0
BolC9t56428H Brassica oleracea HOM05D003086 ORTHO05D003347 2.5e-07 58.9 42 69.0
THA.LOC109116607 Tarenaya hassleriana HOM05D003086 ORTHO05D003347 2.5e-07 58.9 46 60.9
Lsat_1_v5_gn_4_30961 Lactuca sativa HOM05D003086 ORTHO05D003347 3.2e-07 58.5 46 60.9
TAR375G0287 Trochodendron aralioides HOM05D003086 ORTHO05D003347 3.2e-07 58.5 48 56.2
Actinidia20253 Actinidia chinensis HOM05D003086 ORTHO05D003347 4.2e-07 58.2 48 54.2
CARHR255790 Cardamine hirsuta HOM05D003086 ORTHO05D003347 4.2e-07 58.2 46 60.9
Gohir.A11G098500 Gossypium hirsutum HOM05D003086 ORTHO05D003347 4.2e-07 58.2 48 52.1
Gorai.007G110300 Gossypium raimondii HOM05D003086 ORTHO05D003347 4.2e-07 58.2 48 52.1
MBI17_g21048_MAGBIO Magnolia biondii HOM05D003086 ORTHO05D003347 4.2e-07 58.2 48 54.2
AL6G44860 Arabidopsis lyrata HOM05D003086 ORTHO05D003347 5.5e-07 57.8 46 60.9
Actinidia07974 Actinidia chinensis HOM05D003086 ORTHO05D003347 7.2e-07 57.4 48 52.1
Aa31LG2G1580 Aethionema arabicum HOM05D000001 ORTHO05D000003 7.2e-07 57.4 48 60.4
ClCG01G000300 Citrullus lanatus HOM05D003086 ORTHO05D003347 7.2e-07 57.4 48 52.1
MELO3C005905.2 Cucumis melo HOM05D003086 ORTHO05D003347 7.2e-07 57.4 48 52.1
CsaV3_5G000270 Cucumis sativus L. HOM05D003086 ORTHO05D003347 7.2e-07 57.4 48 52.1
Gorai.004G151100 Gossypium raimondii HOM05D003086 ORTHO05D003347 7.2e-07 57.4 48 50.0
Aqoxy5G04301 Aquilegia oxysepala HOM05D003086 ORTHO05D003347 9.3e-07 57.0 46 52.2
HPP92_013003 Vanilla planifolia HOM05D003086 ORTHO05D003347 9.3e-07 57.0 45 55.6
Atru.chr9.1962 Acer truncatum HOM05D003086 ORTHO05D003347 1.2e-06 56.6 45 55.6
Cfa015968 Carpinus fangiana HOM05D003086 ORTHO05D003347 1.2e-06 56.6 48 52.1
Nn3g18930 Nelumbo nucifera HOM05D003086 ORTHO05D003347 1.2e-06 56.6 45 55.6
Thecc.01G339800 Theobroma cacao HOM05D003086 ORTHO05D003347 1.2e-06 56.6 48 52.1
AT4G10810 Arabidopsis thaliana HOM05D003086 ORTHO05D003347 1.6e-06 56.2 46 58.7
PGR142G1468 Punica granatum HOM05D003086 ORTHO05D003347 1.6e-06 56.2 48 52.1
Carub.0006s2958 Capsella rubella HOM05D003086 ORTHO05D003347 2.1e-06 55.8 46 58.7
Psat4g162600 Pisum sativum HOM05D003086 ORTHO05D003347 2.1e-06 55.8 46 50.0
HPP92_025720 Vanilla planifolia HOM05D003086 ORTHO05D003347 2.1e-06 55.8 45 55.6
Aa31LG9G11270 Aethionema arabicum HOM05D003086 ORTHO05D003347 2.7e-06 55.5 44 61.4
DCAR_008957 Daucus carota HOM05D003086 ORTHO05D003347 2.7e-06 55.5 45 57.8
Manes.05G021200 Manihot esculenta HOM05D003086 ORTHO05D003347 2.7e-06 55.5 47 59.6
Rhsim09G0207000 Rhododendron simsii HOM05D003086 ORTHO05D003347 2.7e-06 55.5 46 56.5
CSS0010966 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 3.6e-06 55.1 99 36.4
Hma1.2p1_0591F.1_g185160 Hydrangea macrophylla HOM05D003086 ORTHO05D003347 3.6e-06 55.1 45 55.6
Sed0023695 Sechium edule HOM05D003086 ORTHO05D003347 3.6e-06 55.1 97 33.0
CSS0003230 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 4.6e-06 54.7 48 54.2
CSS0006972 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 4.6e-06 54.7 46 52.2
CSS0024306 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 4.6e-06 54.7 48 54.2
Gohir.D11G103100 Gossypium hirsutum HOM05D003086 ORTHO05D003347 4.6e-06 54.7 48 50.0
Duzib084G0307 Durio zibethinus HOM05D003086 ORTHO05D003347 6.1e-06 54.3 43 55.8
Thhalv10026968m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 6.1e-06 54.3 45 60.0
Thhalv10029101m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 6.1e-06 54.3 42 64.3
Cpa.g.sc96.51 Carica papaya HOM05D003086 ORTHO05D003347 7.9e-06 53.9 48 50.0
Oeu010701.1 Olea europaea HOM05D003086 ORTHO05D003347 7.9e-06 53.9 49 53.1


User provided reference genes

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