Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G025000 Glycine max HOM05D005777 ORTHO05D006854 3.7e-312 1073.5 535 100.0
Glyma.05G218900 Glycine max HOM05D005777 ORTHO05D006854 2.2e-267 925.2 540 88.1
Phvul.002G300700 Phaseolus vulgaris HOM05D005777 ORTHO05D006854 2.9e-219 765.4 555 72.4
Lj4g0026879 Lotus japonicus HOM05D005777 ORTHO05D006854 1.8e-192 676.4 560 65.9
VMungo0251G0419 Vigna mungo HOM05D003100 ORTHO05D003533 1.0e-171 607.4 610 57.9
Psat7g024000 Pisum sativum HOM05D005777 ORTHO05D006854 7.6e-167 591.3 507 62.9
Medtr8g099725 Medicago truncatula HOM05D005777 ORTHO05D006854 2.5e-162 576.2 534 59.7
Lalb_Chr05g0223951 Lupinus albus HOM05D005777 ORTHO05D006854 8.5e-142 508.1 415 65.5
Ca_17460_v3 Cicer arietinum L. HOM05D005777 ORTHO05D006854 2.6e-127 459.9 603 49.8
TPR.G3378 Trifolium pratense HOM05D005777 ORTHO05D006854 9.4e-125 451.4 447 56.8
TWI60G0567 Tripterygium wilfordii HOM05D005777 ORTHO05D006854 1.3e-113 414.5 469 48.6
Atru.chr9.1942 Acer truncatum HOM05D005777 ORTHO05D006854 1.3e-105 387.9 585 44.4
Cfa011969 Carpinus fangiana HOM05D005777 ORTHO05D006854 3.3e-101 373.2 527 43.8
Prupe.5G124500 Prunus persica HOM05D005777 ORTHO05D006854 1.8e-96 357.5 581 41.1
RcHm_v2.0_Chr7g0186161 Rosa chinensis HOM05D005777 ORTHO05D006854 3.1e-96 356.7 375 52.3
FAN04G0792 Fragaria x ananassa HOM05D005777 ORTHO05D006854 9.2e-96 355.1 353 54.7
FvH4_5g11630 Fragaria vesca HOM05D005777 ORTHO05D006854 4.5e-95 352.8 353 55.0
FAN13G2465 Fragaria x ananassa HOM05D005777 ORTHO05D006854 1.7e-94 350.9 563 41.0
Cpa.g.sc79.3 Carica papaya HOM05D005777 ORTHO05D006854 3.8e-94 349.7 444 47.3
PGR042G2859 Punica granatum HOM05D005777 ORTHO05D006854 6.8e-91 339.0 459 44.0
Nitab4.5_0002793g0030 Nicotiana tabacum HOM05D005777 ORTHO05D006854 1.7e-89 334.3 401 47.4
Haze_09107 Corylus avellana HOM05D005777 ORTHO05D006854 2.2e-89 334.0 515 41.4
Lj8C204T6 Lonicera japonica HOM05D005777 ORTHO05D006854 4.9e-89 332.8 406 46.1
Nitab4.5_0002367g0090 Nicotiana tabacum HOM05D005777 ORTHO05D006854 7.0e-88 328.9 541 39.2
Eucgr.E00747 Eucalyptus grandis HOM05D005777 ORTHO05D006854 2.0e-87 327.4 474 42.0
Eucgr.E00744 Eucalyptus grandis HOM05D005777 ORTHO05D006854 2.7e-87 327.0 471 41.8
Eucgr.E00956 Eucalyptus grandis HOM05D005777 ORTHO05D006854 6.0e-87 325.9 470 41.7
CANSAT21G0853 Cannabis sativa HOM05D005777 ORTHO05D006854 1.1e-85 321.6 460 41.7
CSS0003604 Camellia sinensis var. sinensis HOM05D005777 ORTHO05D006854 2.5e-85 320.5 371 48.8
QL02p029612 Quercus lobata HOM05D005777 ORTHO05D006854 2.8e-84 317.0 506 40.7
CsaV3_5G001940 Cucumis sativus L. HOM05D005777 ORTHO05D006854 4.0e-83 313.2 348 50.3
MD06G1111700 Malus domestica HOM05D005777 ORTHO05D006854 1.2e-82 311.6 593 37.4
Sabra07G0049700 Salix brachista HOM05D005777 ORTHO05D006854 3.4e-82 310.1 430 43.5
Sed0007946 Sechium edule HOM05D005777 ORTHO05D006854 3.2e-80 303.5 571 38.5
Peaxi162Scf00074g00526 Petunia axillaris HOM05D005777 ORTHO05D006854 5.4e-80 302.8 347 48.4
MELO3C033830.2 Cucumis melo HOM05D005777 ORTHO05D006854 2.7e-79 300.4 341 48.1
vmacro13879 Vaccinium macrocarpon HOM05D005777 ORTHO05D006854 7.8e-79 298.9 445 41.6
Thecc.08G166000 Theobroma cacao HOM05D005777 ORTHO05D006854 1.3e-78 298.1 411 43.1
Potri.007G058050 Populus trichocarpa HOM05D005777 ORTHO05D006854 5.0e-78 296.2 360 48.6
Sopen08g030950 Solanum pennellii HOM05D005777 ORTHO05D006854 2.5e-77 293.9 452 41.8
Solyc08g082720.4 Solanum lycopersicum HOM05D005777 ORTHO05D006854 1.6e-76 291.2 349 47.9
Rhsim07G0080700 Rhododendron simsii HOM05D005777 ORTHO05D006854 4.7e-76 289.7 463 40.2
CAN.G567.32 Capsicum annuum HOM05D005777 ORTHO05D006854 8.3e-73 278.9 449 41.2
PGSC0003DMG400012134 Solanum tuberosum HOM05D005777 ORTHO05D006854 1.9e-72 277.7 353 45.9
ECA240G0322 Erigeron canadensis HOM05D005777 ORTHO05D006854 1.2e-71 275.0 459 40.1
Lsat_1_v5_gn_6_83361 Lactuca sativa HOM05D005777 ORTHO05D006854 1.3e-70 271.6 440 38.9
TAR629G1222 Trochodendron aralioides HOM05D005777 ORTHO05D006854 3.0e-70 270.4 446 38.8
CiPaw.11G117200 Carya illinoinensis HOM05D005777 ORTHO05D006854 7.3e-69 265.8 271 53.9
MBI07_g24771_MAGBIO Magnolia biondii HOM05D005777 ORTHO05D006854 9.5e-69 265.4 470 37.4
Manes.01G049500 Manihot esculenta HOM05D005777 ORTHO05D006854 3.4e-66 256.9 254 56.3
Nn1g00296 Nelumbo nucifera HOM05D005777 ORTHO05D006854 1.3e-65 255.0 374 41.4
HanXRQChr03g0083721 Helianthus annuus HOM05D005777 ORTHO05D006854 1.7e-65 254.6 354 42.7
FAN18G2480 Fragaria x ananassa HOM05D005777 ORTHO05D006854 2.1e-63 247.7 342 42.7
Aqoxy5G04312 Aquilegia oxysepala HOM05D005777 ORTHO05D006854 4.6e-63 246.5 413 40.2
Oeu055021.1 Olea europaea HOM05D005777 ORTHO05D006854 3.9e-62 243.4 245 51.8
Migut.E01651 Erythranthe guttata HOM05D005777 ORTHO05D006854 1.9e-61 241.1 256 51.6
Cc08_g16390 Coffea canephora HOM05D005777 ORTHO05D006854 6.2e-60 236.1 245 53.1
Migut.E00735 Erythranthe guttata HOM05D005777 ORTHO05D006854 2.4e-59 234.2 383 38.4
Ah.12g052840 Amaranthus hybridus HOM05D005777 ORTHO05D006854 5.3e-59 233.0 277 47.7
Eucgr.E00752 Eucalyptus grandis HOM05D005777 ORTHO05D006854 9.0e-59 232.3 489 34.6
PSO170G4328 Papaver somniferum HOM05D005777 ORTHO05D006854 2.6e-58 230.7 388 36.1
EL10Ac5g12951 Beta vulgaris HOM05D005777 ORTHO05D006854 5.8e-58 229.6 275 45.8
Sc01g0010430 Simmondsia chinensis HOM05D005777 ORTHO05D006854 4.2e-56 223.4 244 53.3
Actinidia22740 Actinidia chinensis HOM05D005777 ORTHO05D006854 1.1e-53 215.3 414 34.3
Hund14203 Selenicereus undatus HOM05D005777 ORTHO05D006854 2.4e-51 207.6 231 49.4
Eucgr.E00762 Eucalyptus grandis HOM05D005777 ORTHO05D006854 3.8e-49 200.3 243 46.9
Eucgr.E00939 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.2e-47 195.3 196 54.1
Gorai.005G117300 Gossypium raimondii HOM05D005777 ORTHO05D006854 1.8e-46 191.4 229 48.0
Gohir.A02G088000 Gossypium hirsutum HOM05D005777 ORTHO05D006854 3.0e-46 190.7 229 47.6
FAN08G0729 Fragaria x ananassa HOM05D005777 ORTHO05D006854 4.3e-45 186.8 308 38.3
Duzib116G0305 Durio zibethinus HOM05D005777 ORTHO05D006854 1.6e-44 184.9 238 45.0
AUR62019875 Chenopodium quinoa HOM05D005777 ORTHO05D006854 1.2e-42 178.7 211 48.3
Ciclev10023874m.g Citrus clementina HOM05D005777 ORTHO05D006854 2.5e-40 171.0 162 57.4
DCAR_006511 Daucus carota HOM05D005777 ORTHO05D006854 7.1e-40 169.5 188 48.4
FAN18G2579 Fragaria x ananassa HOM05D005777 ORTHO05D006854 9.3e-40 169.1 280 38.2
HPP92_024143 Vanilla planifolia HOM05D005777 ORTHO05D006854 1.8e-38 164.9 271 38.7
ATR0602G092 Amborella trichopoda HOM05D005777 ORTHO05D006854 1.1e-37 162.2 243 41.2
SGA_v2.0_scaffold74G24601 Striga asiatica HOM05D005777 ORTHO05D006854 4.3e-37 160.2 243 40.7
Dinv37498 Davidia involucrata HOM05D005777 ORTHO05D006854 4.0e-35 153.7 144 55.6
COL.COLO4_25066 Corchorus olitorius HOM05D000316 ORTHO05D006854 3.4e-34 150.6 377 31.0
Ciclev10023944m.g Citrus clementina HOM05D005777 ORTHO05D006854 1.9e-32 144.8 194 42.3
Eucgr.E00969 Eucalyptus grandis HOM05D005777 ORTHO05D006854 2.5e-32 144.4 170 49.4
Thhalv10028849m.g Eutrema salsugineum HOM05D005777 ORTHO05D006854 2.5e-32 144.4 162 48.8
Eucgr.E00749 Eucalyptus grandis HOM05D005777 ORTHO05D006854 4.2e-32 143.7 160 50.6
GSVIVG01019597001 Vitis vinifera HOM05D005777 ORTHO05D006854 5.5e-32 143.3 120 60.8
THA.LOC104813047 Tarenaya hassleriana HOM05D005777 ORTHO05D006854 1.6e-31 141.7 162 51.9
Eucgr.E00900 Eucalyptus grandis HOM05D005777 ORTHO05D006854 2.1e-31 141.4 169 47.9
Eucgr.E01013 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.0e-30 139.0 170 48.2
Lsat_1_v5_gn_5_82800 Lactuca sativa HOM05D005777 ORTHO05D006854 7.4e-29 132.9 280 34.3
Eucgr.E00726 Eucalyptus grandis HOM05D005777 ORTHO05D006854 4.8e-28 130.2 134 52.2
Carub.0006s2962 Capsella rubella HOM05D005777 ORTHO05D006854 1.4e-27 128.6 162 45.1
FAN04G0565 Fragaria x ananassa HOM05D005777 ORTHO05D006854 3.1e-27 127.5 104 59.6
AL6G44960 Arabidopsis lyrata HOM05D005777 ORTHO05D006854 4.1e-27 127.1 162 45.7
Sp6g06640 Schrenkiella parvula HOM05D005777 ORTHO05D006854 4.1e-27 127.1 162 46.9
CARHR255730 Cardamine hirsuta HOM05D005777 ORTHO05D006854 9.0e-27 125.9 162 45.7
Eucgr.E00912 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.2e-26 125.6 79 69.6
AUR62007011 Chenopodium quinoa HOM05D005777 ORTHO05D006854 3.4e-26 124.0 209 40.7
Lsat_1_v5_gn_9_112141 Lactuca sativa HOM05D005777 ORTHO05D006854 7.7e-26 122.9 123 52.0
Os09g0363400 Oryza sativa ssp. japonica HOM05D005777 ORTHO05D006854 1.0e-25 122.5 225 32.9
AT4G10890 Arabidopsis thaliana HOM05D005777 ORTHO05D006854 2.2e-25 121.3 149 46.3
Eucgr.E00696 Eucalyptus grandis HOM05D005777 ORTHO05D006854 3.8e-25 120.6 134 49.3
Lalb_Chr05g0223961 Lupinus albus HOM05D005777 ORTHO05D006854 3.6e-23 114.0 162 48.1
Aa31LG9G11240 Aethionema arabicum HOM05D005777 ORTHO05D006854 1.0e-22 112.5 84 64.3
BcaB01g01556 Brassica carinata HOM05D005777 ORTHO05D006854 1.0e-22 112.5 147 46.9
CDE03G0022 Ceratophyllum demersum HOM05D002476 ORTHO05D002652 1.0e-22 112.5 229 33.2
C09p35860 Brassica napus HOM05D005777 ORTHO05D006854 1.4e-22 112.1 144 44.4
BraA09t38398Z Brassica rapa HOM05D005777 ORTHO05D006854 1.4e-22 112.1 144 45.8
BcaC04g21086 Brassica carinata HOM05D005777 ORTHO05D006854 2.3e-22 111.3 144 45.1
Actinidia27306 Actinidia chinensis HOM05D005777 ORTHO05D006854 8.8e-22 109.4 70 70.0
BolC9t56419H Brassica oleracea HOM05D005777 ORTHO05D006854 1.5e-21 108.6 144 43.8
Eucgr.E00894 Eucalyptus grandis HOM05D005777 ORTHO05D006854 4.3e-21 107.1 102 51.0
A09p28290 Brassica napus HOM05D005777 ORTHO05D006854 2.8e-20 104.4 144 44.4
Eucgr.E00895 Eucalyptus grandis HOM05D005777 ORTHO05D006854 8.2e-20 102.8 100 50.0
Eucgr.H03743 Eucalyptus grandis HOM05D005777 ORTHO05D006854 3.4e-18 97.4 77 61.0
Gohir.D02G103200 Gossypium hirsutum HOM05D005777 ORTHO05D006854 6.5e-17 93.2 268 28.4
Eucgr.E00686 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.4e-16 92.0 94 51.1
SHI06955 Sapria himalayana HOM05D005777 ORTHO05D006854 1.6e-15 88.6 127 44.1
Hma1.2p1_0338F.1_g129700 Hydrangea macrophylla HOM05D005777 ORTHO05D006854 1.1e-11 75.9 66 59.1
QL08p034398 Quercus lobata HOM05D000176 ORTHO05D000106 3.1e-11 74.3 85 42.4
QL06p042986 Quercus lobata HOM05D000529 ORTHO05D000472 4.1e-11 73.9 85 42.4
AagrBONN_evm.TU.Sc2ySwM_368.2767 Anthoceros agrestis HOM05D005777 ORTHO05D006854 5.3e-11 73.6 75 53.3
Eucgr.H03760 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.4e-08 65.5 59 59.3
FAN18G0036 Fragaria x ananassa HOM05D005777 ORTHO05D006854 1.9e-08 65.1 35 80.0
Eucgr.E00971 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.0e-06 59.3 62 48.4
PSO063G6181 Papaver somniferum HOM05D005777 ORTHO05D006854 1.0e-06 59.3 51 51.0
Eucgr.E00710 Eucalyptus grandis HOM05D005777 ORTHO05D006854 6.7e-06 56.6 62 45.2


User provided reference genes

Program Settings