Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G024900 Glycine max HOM05D005092 ORTHO05D006073 6.7e-114 414.1 215 100.0
Glyma.05G218800 Glycine max HOM05D005092 ORTHO05D006073 2.3e-106 389.0 215 94.9
Phvul.002G300600 Phaseolus vulgaris HOM05D005092 ORTHO05D006073 2.9e-93 345.5 215 84.2
Lj4g0014821 Lotus japonicus HOM05D005092 ORTHO05D006073 2.7e-83 312.4 215 78.6
Medtr8g099720 Medicago truncatula HOM05D005092 ORTHO05D006073 3.4e-73 278.9 213 72.8
Cpa.g.sc15.7 Carica papaya HOM05D005092 ORTHO05D006073 9.8e-73 277.3 219 72.1
Haze_09102 Corylus avellana HOM05D005092 ORTHO05D006073 5.4e-71 271.6 219 68.9
Cfa011974 Carpinus fangiana HOM05D005092 ORTHO05D006073 1.6e-70 270.0 215 70.2
CiPaw.11G117500 Carya illinoinensis HOM05D005092 ORTHO05D006073 4.5e-70 268.5 225 68.4
QL02p029645 Quercus lobata HOM05D005092 ORTHO05D006073 1.0e-69 267.3 218 69.3
Ca_17461_v3 Cicer arietinum L. HOM05D005092 ORTHO05D006073 1.3e-69 266.9 216 69.4
Gohir.D12G239300 Gossypium hirsutum HOM05D005092 ORTHO05D006073 1.3e-69 266.9 188 72.9
Psat7g023960 Pisum sativum HOM05D005092 ORTHO05D006073 1.7e-69 266.5 216 70.4
Gorai.008G256400 Gossypium raimondii HOM05D005092 ORTHO05D006073 5.0e-69 265.0 207 69.1
Gohir.A12G238200 Gossypium hirsutum HOM05D005092 ORTHO05D006073 1.1e-68 263.8 207 69.1
arahy.Tifrunner.gnm1.ann1.CJJ4VI Arachis hypogaea HOM05D005092 ORTHO05D006073 5.5e-68 261.5 206 72.3
Sp2g00240 Schrenkiella parvula HOM05D005092 ORTHO05D006073 9.4e-68 260.8 208 67.8
Cc08_g16360 Coffea canephora HOM05D005092 ORTHO05D006073 1.2e-67 260.4 199 70.4
Lalb_Chr09g0332211 Lupinus albus HOM05D005092 ORTHO05D006073 2.1e-67 259.6 195 73.3
CSS0040137 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 2.7e-67 259.2 214 70.1
Thhalv10023690m.g Eutrema salsugineum HOM05D005092 ORTHO05D006073 6.1e-67 258.1 215 66.0
arahy.Tifrunner.gnm1.ann1.99ISIC Arachis hypogaea HOM05D005092 ORTHO05D006073 8.0e-67 257.7 205 69.8
DCAR_006514 Daucus carota HOM05D005092 ORTHO05D006073 8.0e-67 257.7 205 72.7
BcaB07g31497 Brassica carinata HOM05D005092 ORTHO05D006073 1.4e-66 256.9 185 71.4
AL2G10290 Arabidopsis lyrata HOM05D005092 ORTHO05D006073 4.0e-66 255.4 208 65.9
AT1G64510 Arabidopsis thaliana HOM05D005092 ORTHO05D006073 4.0e-66 255.4 205 66.3
TAR425G0003 Trochodendron aralioides HOM05D005092 ORTHO05D006073 4.0e-66 255.4 220 68.2
BcaB07g31470 Brassica carinata HOM05D005092 ORTHO05D006073 5.2e-66 255.0 213 67.6
Ciclev10022161m.g Citrus clementina HOM05D005092 ORTHO05D006073 6.8e-66 254.6 219 67.6
Aa31LG2G1490 Aethionema arabicum HOM05D005092 ORTHO05D006073 8.8e-66 254.2 209 65.6
THA.LOC104809322 Tarenaya hassleriana HOM05D005092 ORTHO05D006073 1.2e-65 253.8 191 71.2
Dinv37500 Davidia involucrata HOM05D005092 ORTHO05D006073 2.6e-65 252.7 170 75.3
CARHR046440 Cardamine hirsuta HOM05D005092 ORTHO05D006073 3.4e-65 252.3 212 65.6
Thecc.03G302300 Theobroma cacao HOM05D005092 ORTHO05D006073 3.4e-65 252.3 214 65.9
Carub.0002s0024 Capsella rubella HOM05D005092 ORTHO05D006073 4.4e-65 251.9 210 65.2
RcHm_v2.0_Chr7g0186131 Rosa chinensis HOM05D005092 ORTHO05D006073 4.4e-65 251.9 196 69.4
Potri.001G088300 Populus trichocarpa HOM05D005092 ORTHO05D006073 5.7e-65 251.5 218 67.0
BraA09t37111Z Brassica rapa HOM05D005092 ORTHO05D006073 1.3e-64 250.4 218 66.1
FAN13G0604 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.3e-64 250.4 154 80.5
Nitab4.5_0004515g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 1.7e-64 250.0 226 64.6
A09p14650 Brassica napus HOM05D005092 ORTHO05D006073 2.8e-64 249.2 215 66.0
CANSAT21G1519 Cannabis sativa HOM05D005092 ORTHO05D006073 2.8e-64 249.2 218 67.0
MD06G1111400 Malus domestica HOM05D005092 ORTHO05D006073 2.8e-64 249.2 150 82.7
MD14G1132700 Malus domestica HOM05D005092 ORTHO05D006073 2.8e-64 249.2 206 67.5
Dinv38813 Davidia involucrata HOM05D005092 ORTHO05D006073 3.7e-64 248.8 220 64.5
Sabra01G0064600 Salix brachista HOM05D005092 ORTHO05D006073 3.7e-64 248.8 215 66.5
FAN08G0879 Fragaria x ananassa HOM05D005092 ORTHO05D006073 4.9e-64 248.4 201 68.7
Lsat_1_v5_gn_6_9541 Lactuca sativa HOM05D005092 ORTHO05D006073 4.9e-64 248.4 165 75.8
BcaC04g22575 Brassica carinata HOM05D005092 ORTHO05D006073 8.3e-64 247.7 216 65.7
BraA09t37086Z Brassica rapa HOM05D005092 ORTHO05D006073 8.3e-64 247.7 218 65.1
PSO135G0789 Papaver somniferum HOM05D005092 ORTHO05D006073 8.3e-64 247.7 219 65.8
Peaxi162Scf00117g00912 Petunia axillaris HOM05D005092 ORTHO05D006073 8.3e-64 247.7 185 70.3
BolC9t54633H Brassica oleracea HOM05D005092 ORTHO05D006073 1.1e-63 247.3 216 65.7
A09p14390 Brassica napus HOM05D005092 ORTHO05D006073 1.8e-63 246.5 215 65.6
C09p17310 Brassica napus HOM05D005092 ORTHO05D006073 1.8e-63 246.5 216 65.3
COL.COLO4_10743 Corchorus olitorius HOM05D005092 ORTHO05D006073 1.8e-63 246.5 214 63.6
C09p17730 Brassica napus HOM05D005092 ORTHO05D006073 2.4e-63 246.1 216 65.3
BolC9t54667H Brassica oleracea HOM05D005092 ORTHO05D006073 2.4e-63 246.1 219 64.8
FvH4_5g11660 Fragaria vesca HOM05D005092 ORTHO05D006073 3.1e-63 245.7 201 66.7
FAN18G1279 Fragaria x ananassa HOM05D005092 ORTHO05D006073 3.1e-63 245.7 201 66.7
FAN18G3046 Fragaria x ananassa HOM05D005092 ORTHO05D006073 3.1e-63 245.7 201 66.7
PSO384G1727 Papaver somniferum HOM05D005092 ORTHO05D006073 3.1e-63 245.7 220 65.5
PGSC0003DMG400012136 Solanum tuberosum HOM05D005092 ORTHO05D006073 3.1e-63 245.7 214 65.0
Duzib068G1058 Durio zibethinus HOM05D005092 ORTHO05D006073 5.4e-63 245.0 204 65.7
FAN04G2351 Fragaria x ananassa HOM05D005092 ORTHO05D006073 5.4e-63 245.0 201 67.2
Nitab4.5_0002367g0080 Nicotiana tabacum HOM05D005092 ORTHO05D006073 5.4e-63 245.0 217 67.3
TPR.G3401 Trifolium pratense HOM05D005092 ORTHO05D006073 7.0e-63 244.6 222 64.4
Lj2A163T69 Lonicera japonica HOM05D005092 ORTHO05D006073 9.2e-63 244.2 221 63.8
Atru.chr9.1939 Acer truncatum HOM05D005092 ORTHO05D006073 1.2e-62 243.8 214 66.4
Duzib068G1375 Durio zibethinus HOM05D005092 ORTHO05D006073 1.2e-62 243.8 216 64.8
HanXRQChr07g0190751 Helianthus annuus HOM05D005092 ORTHO05D006073 1.2e-62 243.8 196 69.9
HanXRQChr17g0535041 Helianthus annuus HOM05D005092 ORTHO05D006073 1.2e-62 243.8 198 68.7
Prupe.5G124200 Prunus persica HOM05D005092 ORTHO05D006073 1.6e-62 243.4 206 66.0
TWI81G0988 Tripterygium wilfordii HOM05D005092 ORTHO05D006073 1.6e-62 243.4 220 65.5
MBI07_g24777_MAGBIO Magnolia biondii HOM05D005092 ORTHO05D006073 2.0e-62 243.0 215 66.5
Nitab4.5_0006302g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 2.7e-62 242.7 216 66.2
Actinidia04188 Actinidia chinensis HOM05D005092 ORTHO05D006073 3.5e-62 242.3 222 66.7
Nn3g18958 Nelumbo nucifera HOM05D005092 ORTHO05D006073 3.5e-62 242.3 216 67.1
PGR031G0045 Punica granatum HOM05D005092 ORTHO05D006073 5.9e-62 241.5 271 55.7
AUR62019873 Chenopodium quinoa HOM05D005092 ORTHO05D006073 7.7e-62 241.1 221 65.6
CSS0022378 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.0e-61 240.7 203 68.5
CSS0038140 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.0e-61 240.7 203 68.5
Solyc08g082690.2 Solanum lycopersicum HOM05D005092 ORTHO05D006073 1.0e-61 240.7 214 64.0
Sopen08g030910 Solanum pennellii HOM05D005092 ORTHO05D006073 1.0e-61 240.7 214 64.0
Sed0021119 Sechium edule HOM05D005092 ORTHO05D006073 3.8e-61 238.8 214 63.6
AUR62007009 Chenopodium quinoa HOM05D005092 ORTHO05D006073 6.6e-61 238.0 194 69.1
CSS0048233 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 8.6e-61 237.7 213 65.7
Manes.01G045210 Manihot esculenta HOM05D005092 ORTHO05D006073 8.6e-61 237.7 216 63.4
Ah.07g197620 Amaranthus hybridus HOM05D005092 ORTHO05D006073 3.3e-60 235.7 217 64.1
Duzib068G0950 Durio zibethinus HOM05D005092 ORTHO05D006073 1.2e-59 233.8 203 64.0
EL10Ac5g12949 Beta vulgaris HOM05D005092 ORTHO05D006073 2.1e-59 233.0 218 65.1
Hma1.2p1_0440F.1_g153550 Hydrangea macrophylla HOM05D005092 ORTHO05D006073 2.1e-59 233.0 217 64.1
Ah.12g052820 Amaranthus hybridus HOM05D005092 ORTHO05D006073 3.6e-59 232.3 167 72.5
Aqoxy7G00063 Aquilegia oxysepala HOM05D005092 ORTHO05D006073 3.6e-59 232.3 208 62.5
CDE02G0126 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 8.9e-58 227.6 155 75.5
CDE02G4008 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 1.2e-57 227.3 203 62.6
Nitab4.5_0015800g0020 Nicotiana tabacum HOM05D005092 ORTHO05D006073 1.2e-57 227.3 199 64.8
Actinidia22183 Actinidia chinensis HOM05D005092 ORTHO05D006073 1.5e-57 226.9 215 61.9
Rhsim02G0248400 Rhododendron simsii HOM05D005092 ORTHO05D006073 2.6e-57 226.1 214 60.7
BcaC04g22614 Brassica carinata HOM05D005092 ORTHO05D006073 3.4e-57 225.7 204 63.2
CDE08G0689 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 3.4e-57 225.7 206 61.7
Sc07g0010130 Simmondsia chinensis HOM05D005092 ORTHO05D006073 7.5e-57 224.6 190 66.3
ATR0602G266 Amborella trichopoda HOM05D005092 ORTHO05D006073 9.8e-57 224.2 220 61.8
CSS0033480 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.6e-54 216.9 223 60.5
Lalb_Chr14g0362701 Lupinus albus HOM05D005092 ORTHO05D006073 1.6e-54 216.9 219 60.3
SalBow8G0392 Salvia bowleyana HOM05D005092 ORTHO05D006073 4.6e-54 215.3 194 61.9
Migut.M00752 Erythranthe guttata HOM05D005092 ORTHO05D006073 3.0e-53 212.6 208 60.1
MSTRG.14949 Avicennia marina HOM05D005092 ORTHO05D006073 5.0e-53 211.8 220 58.2
MELO3C005759.2 Cucumis melo HOM05D005092 ORTHO05D006073 5.0e-53 211.8 208 59.1
HanXRQChr17g0534641 Helianthus annuus HOM05D005092 ORTHO05D006073 3.3e-52 209.1 120 85.8
CsaV3_5G001930 Cucumis sativus L. HOM05D005092 ORTHO05D006073 1.0e-50 204.1 201 58.7
Hund11375 Selenicereus undatus HOM05D005092 ORTHO05D006073 4.0e-50 202.2 222 55.4
Lj8A204G63 Lonicera japonica HOM05D005092 ORTHO05D006073 5.2e-50 201.8 215 57.2
unitig_62.g23053 Utricularia gibba HOM05D005092 ORTHO05D006073 5.2e-50 201.8 198 59.6
CAN.G567.28 Capsicum annuum HOM05D005092 ORTHO05D006073 2.6e-49 199.5 301 44.5
Migut.M00753 Erythranthe guttata HOM05D005092 ORTHO05D006073 1.9e-47 193.4 146 69.2
SGA_v2.0_scaffold34G13767 Striga asiatica HOM05D005092 ORTHO05D006073 4.1e-47 192.2 216 56.0
Peaxi162Scf00074g00540 Petunia axillaris HOM05D005092 ORTHO05D006073 1.2e-46 190.7 190 57.4
HPP92_003891 Vanilla planifolia HOM05D005092 ORTHO05D006073 7.8e-46 188.0 154 63.0
HPP92_003874 Vanilla planifolia HOM05D003037 ORTHO05D003659 3.0e-45 186.0 156 61.5
vmacro11536 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 6.6e-45 184.9 215 51.6
SalBow7G2047 Salvia bowleyana HOM05D005092 ORTHO05D006073 4.7e-43 178.7 223 50.2
SalBow7G3059 Salvia bowleyana HOM05D005092 ORTHO05D006073 4.7e-43 178.7 223 50.2
GSVIVG01019593001 Vitis vinifera HOM05D005092 ORTHO05D006073 1.4e-42 177.2 102 87.3
ECA233G5643 Erigeron canadensis HOM05D005092 ORTHO05D006073 3.1e-42 176.0 176 61.9
Os03g0843400 Oryza sativa ssp. japonica HOM05D005092 ORTHO05D006073 1.2e-41 174.1 119 72.3
Zm00001eb064130 Zea mays HOM05D005092 ORTHO05D006073 2.4e-39 166.4 213 47.9
Atru.chr10.1577 Acer truncatum HOM05D005092 ORTHO05D006073 7.3e-36 154.8 93 80.6
Mapoly0115s0060 Marchantia polymorpha HOM05D005092 ORTHO05D006073 2.6e-33 146.4 131 53.4
Pp3c15_17560 Physcomitrium patens HOM05D005092 ORTHO05D006073 3.4e-33 146.0 201 46.3
Sabra03G0103200 Salix brachista HOM05D005092 ORTHO05D006073 2.2e-32 143.3 225 48.0
CBR_g45689 Chara braunii HOM05D005092 ORTHO05D006073 3.8e-32 142.5 115 58.3
Pp3c9_9180 Physcomitrium patens HOM05D005092 ORTHO05D006073 8.4e-32 141.4 198 45.5
Eucgr.D01771 Eucalyptus grandis HOM05D005092 ORTHO05D006073 1.9e-31 140.2 81 86.4
SMO141G0012 Selaginella moellendorffii HOM05D005092 ORTHO05D006073 2.7e-30 136.3 106 57.5
SEGI_34901 Sequoiadendron giganteum HOM05D005092 ORTHO05D006073 2.7e-30 136.3 99 65.7
AagrBONN_evm.TU.Sc2ySwM_117.1171 Anthoceros agrestis HOM05D005092 ORTHO05D006073 7.8e-30 134.8 129 51.9
CSS0046261 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 4.0e-26 122.5 67 88.1
CSS0048158 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 4.0e-26 122.5 67 88.1
vmacro22558 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 4.0e-26 122.5 80 73.8
Nn1g00282 Nelumbo nucifera HOM05D005092 ORTHO05D006073 4.3e-20 102.4 137 54.0
Oeu061337.1 Olea europaea HOM05D005092 ORTHO05D006073 1.1e-18 97.8 70 70.0
ClCG01G001790 Citrullus lanatus HOM05D005092 ORTHO05D006073 3.4e-17 92.8 145 46.9
HanXRQChr07g0190051 Helianthus annuus HOM05D005092 ORTHO05D006073 1.6e-14 84.0 137 40.1
A01p35480 Brassica napus HOM05D005092 ORTHO05D006073 7.9e-14 81.6 50 76.0
FAN28G1308 Fragaria x ananassa HOM05D022793 ORTHO05D200777 5.8e-09 65.5 63 57.1
A04p11060 Brassica napus HOM05D023372 ORTHO05D024533 3.2e-07 59.7 38 76.3


User provided reference genes

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