Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G021800 Glycine max HOM05D005006 ORTHO05D005903 9.3e-90 333.6 174 100.0
Glyma.05G215700 Glycine max HOM05D005006 ORTHO05D005903 1.3e-78 296.6 174 92.0
Phvul.002G296900 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 8.5e-67 257.3 183 78.7
VMungo0251G1458 Vigna mungo HOM05D005006 ORTHO05D005903 1.8e-64 249.6 186 77.4
Glyma.11G018400 Glycine max HOM05D005006 ORTHO05D005903 6.1e-49 198.0 165 67.3
Glyma.01G224600 Glycine max HOM05D005006 ORTHO05D005903 1.8e-45 186.4 166 65.1
Lj4g0012980 Lotus japonicus HOM05D005006 ORTHO05D005903 5.0e-43 178.3 183 63.4
Medtr8g099340 Medicago truncatula HOM05D005006 ORTHO05D005903 1.0e-40 170.6 177 62.1
Medtr5g009490 Medicago truncatula HOM05D005006 ORTHO05D005903 2.3e-40 169.5 168 56.0
Psat7g027080 Pisum sativum HOM05D005006 ORTHO05D005903 5.7e-39 164.9 177 57.6
Ca_17490_v3 Cicer arietinum L. HOM05D005006 ORTHO05D005903 7.5e-39 164.5 168 61.3
VMungo1215G3249 Vigna mungo HOM05D005266 ORTHO05D006416 9.7e-39 164.1 152 61.2
Psat0s4474g0040 Pisum sativum HOM05D005006 ORTHO05D005903 2.8e-38 162.5 183 54.6
TPR.G6668 Trifolium pratense HOM05D005006 ORTHO05D005903 5.3e-37 158.3 181 54.7
Lalb_Chr05g0224201 Lupinus albus HOM05D005006 ORTHO05D005903 2.2e-35 152.9 187 56.1
LjContig00312_ERROPOS870357g0014674 Lotus japonicus HOM05D005006 ORTHO05D005903 2.7e-33 146.0 181 52.5
Sp7g00270 Schrenkiella parvula HOM05D005006 ORTHO05D005903 1.1e-29 134.0 170 51.8
CiPaw.11G123200 Carya illinoinensis HOM05D005006 ORTHO05D005903 5.4e-29 131.7 181 50.8
BraA07t29781Z Brassica rapa HOM05D005006 ORTHO05D005903 3.5e-28 129.0 178 50.0
A07p20950 Brassica napus HOM05D005006 ORTHO05D005903 1.0e-27 127.5 178 49.4
BcaB02g07876 Brassica carinata HOM05D005006 ORTHO05D005903 5.0e-27 125.2 181 49.2
BcaC08g44558 Brassica carinata HOM05D005006 ORTHO05D005903 7.2e-26 121.3 179 48.6
C06p20240 Brassica napus HOM05D005006 ORTHO05D005903 7.2e-26 121.3 179 48.6
BolC6t37205H Brassica oleracea HOM05D005006 ORTHO05D005903 7.2e-26 121.3 179 48.6
CARHR212760 Cardamine hirsuta HOM05D005006 ORTHO05D005903 7.2e-26 121.3 177 48.6
AT5G41810 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 4.7e-25 118.6 180 47.8
Haze_08652 Corylus avellana HOM05D005006 ORTHO05D005903 4.7e-25 118.6 169 48.5
FAN13G1208 Fragaria x ananassa HOM05D005006 ORTHO05D005903 6.1e-25 118.2 174 44.3
FAN18G0263 Fragaria x ananassa HOM05D005006 ORTHO05D005903 6.1e-25 118.2 174 44.3
QL02p031286 Quercus lobata HOM05D005006 ORTHO05D005903 8.0e-25 117.9 182 46.7
AL7G47430 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 1.0e-24 117.5 180 47.8
CANSAT21G0143 Cannabis sativa HOM05D005006 ORTHO05D005903 1.0e-24 117.5 176 48.3
Haze_08651 Corylus avellana HOM05D005006 ORTHO05D005903 1.0e-24 117.5 169 47.9
Dinv37546 Davidia involucrata HOM05D005006 ORTHO05D005903 1.0e-24 117.5 168 47.6
TWI15G0537 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 1.0e-24 117.5 188 44.1
Manes.02G011900 Manihot esculenta HOM05D005006 ORTHO05D005903 1.4e-24 117.1 164 48.8
PGR031G0908 Punica granatum HOM05D005006 ORTHO05D005903 1.8e-24 116.7 169 44.4
FvH4_5g04150 Fragaria vesca HOM05D005006 ORTHO05D005903 3.0e-24 115.9 174 44.3
FAN18G2980 Fragaria x ananassa HOM05D005006 ORTHO05D005903 3.0e-24 115.9 174 43.7
RcHm_v2.0_Chr7g0195351 Rosa chinensis HOM05D005006 ORTHO05D005903 8.9e-24 114.4 178 45.5
Duzib084G0720 Durio zibethinus HOM05D005006 ORTHO05D005903 1.2e-23 114.0 168 44.0
TWI81G0332 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 1.2e-23 114.0 166 45.2
PGSC0003DMG400012296 Solanum tuberosum HOM05D005006 ORTHO05D005903 1.5e-23 113.6 166 46.4
Gohir.A08G085100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 2.6e-23 112.8 172 44.2
Solyc08g082090.1 Solanum lycopersicum HOM05D005006 ORTHO05D005903 3.4e-23 112.5 166 47.0
Sopen08g030380 Solanum pennellii HOM05D005006 ORTHO05D005903 3.4e-23 112.5 166 47.0
Potri.001G093500 Populus trichocarpa HOM05D005006 ORTHO05D005903 1.3e-22 110.5 160 45.6
Cfa012825 Carpinus fangiana HOM05D005006 ORTHO05D005903 1.7e-22 110.2 169 47.9
Gohir.D08G132000 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.7e-22 110.2 174 42.5
Gorai.004G134900 Gossypium raimondii HOM05D005006 ORTHO05D005903 1.7e-22 110.2 174 42.5
Carub.0007s3356 Capsella rubella HOM05D005006 ORTHO05D005903 2.8e-22 109.4 188 43.6
Eucgr.D01714 Eucalyptus grandis HOM05D005006 ORTHO05D005903 2.8e-22 109.4 191 43.5
MD14G1122100 Malus domestica HOM05D005006 ORTHO05D005903 3.7e-22 109.0 180 44.4
Manes.01G045300 Manihot esculenta HOM05D005006 ORTHO05D005903 3.7e-22 109.0 173 43.4
ClCG01G001990 Citrullus lanatus HOM05D005006 ORTHO05D005903 6.3e-22 108.2 173 42.2
Atru.chr9.2028 Acer truncatum HOM05D005006 ORTHO05D005903 8.3e-22 107.8 181 41.4
Atru.chr9.2036 Acer truncatum HOM05D005006 ORTHO05D005903 8.3e-22 107.8 181 41.4
THA.LOC104809339 Tarenaya hassleriana HOM05D005006 ORTHO05D005903 1.4e-21 107.1 183 43.7
Cc08_g15850 Coffea canephora HOM05D005006 ORTHO05D005903 1.8e-21 106.7 169 45.6
MELO3C005742.2 Cucumis melo HOM05D005006 ORTHO05D005903 3.1e-21 105.9 175 42.3
CsaV3_5G002120 Cucumis sativus L. HOM05D005006 ORTHO05D005903 3.1e-21 105.9 176 42.0
Thecc.03G294000 Theobroma cacao HOM05D005006 ORTHO05D005903 5.4e-21 105.1 166 42.8
Ciclev10022492m.g Citrus clementina HOM05D005006 ORTHO05D005903 7.0e-21 104.8 182 42.9
COL.COLO4_21708 Corchorus olitorius HOM05D005006 ORTHO05D005903 1.6e-20 103.6 191 41.4
HanXRQChr03g0085171 Helianthus annuus HOM05D005006 ORTHO05D005903 2.0e-20 103.2 176 40.9
TAR629G3139 Trochodendron aralioides HOM05D005006 ORTHO05D005903 2.7e-20 102.8 175 46.3
Nitab4.5_0007099g0020 Nicotiana tabacum HOM05D005006 ORTHO05D005903 5.9e-20 101.7 163 42.3
Aqoxy5G04131 Aquilegia oxysepala HOM05D005006 ORTHO05D005903 1.0e-19 100.9 167 41.3
Prupe.5G116000 Prunus persica HOM05D005006 ORTHO05D005903 1.0e-19 100.9 175 43.4
Sed0010968 Sechium edule HOM05D005006 ORTHO05D005903 1.0e-19 100.9 163 44.2
FAN04G1712 Fragaria x ananassa HOM05D005006 ORTHO05D005903 1.3e-19 100.5 160 41.9
FAN04G3134 Fragaria x ananassa HOM05D005006 ORTHO05D005903 1.3e-19 100.5 160 41.9
MD06G1103200 Malus domestica HOM05D005006 ORTHO05D005903 1.3e-19 100.5 177 44.1
Atru.chr2.764 Acer truncatum HOM05D005006 ORTHO05D005903 1.7e-19 100.1 181 40.3
Sc22g0005120 Simmondsia chinensis HOM05D005006 ORTHO05D005903 1.7e-19 100.1 165 41.8
Oeu061095.1 Olea europaea HOM05D005006 ORTHO05D005903 2.3e-19 99.8 173 40.5
Rhsim07G0083400 Rhododendron simsii HOM05D005006 ORTHO05D005903 2.9e-19 99.4 174 42.5
Cpa.g.sc775.1 Carica papaya HOM05D005006 ORTHO05D005903 3.8e-19 99.0 163 42.9
TPR.G3451 Trifolium pratense HOM05D006501 ORTHO05D008241 6.6e-19 98.2 83 68.7
DCAR_027715 Daucus carota HOM05D005006 ORTHO05D005903 8.6e-19 97.8 190 41.1
Phvul.002G163200 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 8.6e-19 97.8 102 56.9
Lsat_1_v5_gn_6_11781 Lactuca sativa HOM05D005006 ORTHO05D005903 1.1e-18 97.4 188 39.9
Actinidia01391 Actinidia chinensis HOM05D005006 ORTHO05D005903 1.9e-18 96.7 184 40.2
Duzib068G0822 Durio zibethinus HOM05D005006 ORTHO05D005903 1.9e-18 96.7 166 42.8
ECA240G3705 Erigeron canadensis HOM05D005006 ORTHO05D005903 2.5e-18 96.3 183 40.4
Aa31LG9G320 Aethionema arabicum HOM05D005006 ORTHO05D005903 5.6e-18 95.1 165 42.4
AUR62010816 Chenopodium quinoa HOM05D005006 ORTHO05D005903 5.6e-18 95.1 172 43.0
Hma1.2p1_0359F.1_g135340 Hydrangea macrophylla HOM05D005006 ORTHO05D005903 9.5e-18 94.4 195 40.0
Lsat_1_v5_gn_6_85661 Lactuca sativa HOM05D005006 ORTHO05D005903 2.8e-17 92.8 176 39.8
CSS0014692 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 1.0e-16 90.9 171 40.4
Thhalv10023644m.g Eutrema salsugineum HOM05D005006 ORTHO05D005903 1.0e-16 90.9 171 40.4
HanXRQChr07g0191041 Helianthus annuus HOM05D005006 ORTHO05D005903 1.0e-16 90.9 166 39.2
MELO3C016304.2 Cucumis melo HOM05D005006 ORTHO05D005903 1.8e-16 90.1 176 40.9
Sed0013874 Sechium edule HOM05D005006 ORTHO05D005903 2.3e-16 89.7 177 38.4
ClCG07G014930 Citrullus lanatus HOM05D005006 ORTHO05D005903 3.0e-16 89.4 181 39.2
ClCG10G009270 Citrullus lanatus HOM05D005006 ORTHO05D005903 3.0e-16 89.4 181 39.2
Sabra01G0069400 Salix brachista HOM05D000089 ORTHO05D003403 4.0e-16 89.0 163 39.9
CSS0022093 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 5.2e-16 88.6 172 40.1
ECA233G6185 Erigeron canadensis HOM05D005006 ORTHO05D005903 5.2e-16 88.6 196 36.2
BcaC04g22629 Brassica carinata HOM05D005006 ORTHO05D005903 6.8e-16 88.2 167 39.5
MSTRG.13880 Avicennia marina HOM05D005006 ORTHO05D005903 8.9e-16 87.8 161 40.4
C09p17190 Brassica napus HOM05D005006 ORTHO05D005903 1.5e-15 87.0 166 39.2
BolC9t54617H Brassica oleracea HOM05D005006 ORTHO05D005903 1.5e-15 87.0 166 39.2
Nn1g01823 Nelumbo nucifera HOM05D005006 ORTHO05D005903 2.0e-15 86.7 173 38.2
Sp2g00420 Schrenkiella parvula HOM05D005006 ORTHO05D005903 2.6e-15 86.3 176 36.9
Lalb_Chr05g0211621 Lupinus albus HOM05D005006 ORTHO05D005903 3.4e-15 85.9 103 56.3
Carub.0002s0046 Capsella rubella HOM05D005006 ORTHO05D005903 4.4e-15 85.5 179 38.5
Sed0017945 Sechium edule HOM05D005006 ORTHO05D005903 5.8e-15 85.1 156 41.7
A09p14260 Brassica napus HOM05D005006 ORTHO05D005903 1.7e-14 83.6 173 37.6
SGA_v2.0_scaffold111G31421 Striga asiatica HOM05D005006 ORTHO05D005903 1.7e-14 83.6 163 39.3
AL2G10550 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 4.9e-14 82.0 167 35.9
Rhsim02G0241500 Rhododendron simsii HOM05D005006 ORTHO05D005903 4.9e-14 82.0 188 38.8
BraA09t37075Z Brassica rapa HOM05D005006 ORTHO05D005903 6.4e-14 81.6 172 37.8
CsaV3_4G006460 Cucumis sativus L. HOM05D005006 ORTHO05D005903 6.4e-14 81.6 171 36.3
Peaxi162Scf00117g00128 Petunia axillaris HOM05D005006 ORTHO05D005903 2.4e-13 79.7 153 42.5
MBI07_g24340_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 1.2e-12 77.4 172 34.9
Peaxi162Scf00074g01119 Petunia axillaris HOM05D005006 ORTHO05D005903 1.2e-12 77.4 157 38.9
BcaB07g31512 Brassica carinata HOM05D005006 ORTHO05D005903 2.7e-12 76.3 164 38.4
PGR042G1559 Punica granatum HOM05D005006 ORTHO05D005903 2.7e-12 76.3 167 37.1
AT1G64340 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 5.0e-11 72.0 154 37.0
Dinv38852 Davidia involucrata HOM05D005006 ORTHO05D005903 4.3e-10 68.9 125 41.6
Sc01g0010170 Simmondsia chinensis HOM05D005006 ORTHO05D005903 4.3e-10 68.9 166 35.5
Gohir.A11G024100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.2e-09 67.4 88 46.6
Manes.02G012001 Manihot esculenta HOM05D005006 ORTHO05D005903 1.1e-08 64.3 163 34.4
MBI06_g32753_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 3.1e-08 62.8 172 36.6
Gohir.D12G236200 Gossypium hirsutum HOM05D005006 ORTHO05D005903 5.2e-08 62.0 101 42.6
Gorai.008G253000 Gossypium raimondii HOM05D005006 ORTHO05D005903 5.2e-08 62.0 101 42.6
Gohir.A12G235100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 6.8e-08 61.6 113 40.7
ClCG11G005390 Citrullus lanatus HOM05D000189 ORTHO05D006628 1.5e-07 60.5 157 35.7
Nn3g19068 Nelumbo nucifera HOM05D005006 ORTHO05D005903 3.4e-07 59.3 109 45.0
EL10Ac5g12894 Beta vulgaris HOM05D005006 ORTHO05D005903 2.2e-06 56.6 121 42.1
ClCG01G011510 Citrullus lanatus HOM05D005006 ORTHO05D005903 4.9e-06 55.5 107 39.3
ClCG05G010200 Citrullus lanatus HOM05D005006 ORTHO05D005903 4.9e-06 55.5 107 39.3
ClCG07G009600 Citrullus lanatus HOM05D005006 ORTHO05D005903 4.9e-06 55.5 107 39.3


User provided reference genes

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