Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G020100 Glycine max HOM05D001461 ORTHO05D005534 2.5e-36 154.8 75 100.0
arahy.Tifrunner.gnm1.ann1.2LVS12 Arachis hypogaea HOM05D001461 ORTHO05D005534 8.5e-16 86.7 75 64.0
QL02p032078 Quercus lobata HOM05D001461 ORTHO05D005534 9.4e-15 83.2 55 78.2
Lalb_Chr09g0332711 Lupinus albus HOM05D001461 ORTHO05D005534 6.1e-14 80.5 53 77.4
SEGI_29517 Sequoiadendron giganteum HOM05D001461 ORTHO05D005534 1.4e-13 79.3 75 57.3
CANSAT21G0685 Cannabis sativa HOM05D001461 ORTHO05D005534 5.2e-13 77.4 53 75.5
LjContig00312_ERROPOS870357g0027559 Lotus japonicus HOM05D001461 ORTHO05D005534 5.2e-13 77.4 53 77.4
Lj4g0009029 Lotus japonicus HOM05D001461 ORTHO05D005534 1.5e-12 75.9 53 73.6
LjContig00001g0001336 Lotus japonicus HOM05D001461 ORTHO05D005534 1.5e-12 75.9 53 73.6
LjContig00001g0023327 Lotus japonicus HOM05D001461 ORTHO05D005534 1.5e-12 75.9 53 73.6
Nitab4.5_0004629g0090 Nicotiana tabacum HOM05D001461 ORTHO05D005534 1.5e-12 75.9 58 69.0
Atru.chr9.2071 Acer truncatum HOM05D001461 ORTHO05D005534 2.0e-12 75.5 52 75.0
Gohir.A12G232000 Gossypium hirsutum HOM05D001461 ORTHO05D005534 2.0e-12 75.5 53 71.7
Gohir.D12G235300 Gossypium hirsutum HOM05D001461 ORTHO05D005534 2.0e-12 75.5 53 71.7
Gorai.008G251500 Gossypium raimondii HOM05D001461 ORTHO05D005534 2.0e-12 75.5 53 71.7
Medtr5g009740 Medicago truncatula HOM05D001461 ORTHO05D005534 2.0e-12 75.5 53 73.6
Psat2g033040 Pisum sativum HOM05D001461 ORTHO05D005534 2.0e-12 75.5 53 73.6
GSVIVG01019462001 Vitis vinifera HOM05D001461 ORTHO05D002801 2.0e-12 75.5 51 78.4
arahy.Tifrunner.gnm1.ann1.Z0SXD6 Arachis hypogaea HOM05D001461 ORTHO05D005534 2.6e-12 75.1 53 75.5
MD15G1108200 Malus domestica HOM05D001461 ORTHO05D005534 2.6e-12 75.1 53 71.7
ClCG11G007680 Citrullus lanatus HOM05D001461 ORTHO05D005534 3.4e-12 74.7 55 72.7
MELO3C008160.2 Cucumis melo HOM05D001461 ORTHO05D005534 3.4e-12 74.7 55 72.7
CsaV3_2G033880 Cucumis sativus L. HOM05D001461 ORTHO05D005534 3.4e-12 74.7 55 72.7
RcHm_v2.0_Chr6g0304921 Rosa chinensis HOM05D001461 ORTHO05D005534 3.4e-12 74.7 52 75.0
Nitab4.5_0002026g0080 Nicotiana tabacum HOM05D001461 ORTHO05D005534 4.4e-12 74.3 53 73.6
COL.COLO4_21750 Corchorus olitorius HOM05D001461 ORTHO05D005534 5.7e-12 73.9 52 71.2
Hma1.2p1_0384F.1_g140900 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 5.7e-12 73.9 53 71.7
Hma1.2p1_0397F.1_g143760 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 5.7e-12 73.9 52 71.2
Prupe.5G111900 Prunus persica HOM05D001461 ORTHO05D005534 5.7e-12 73.9 52 73.1
Thecc.03G290500 Theobroma cacao HOM05D001461 ORTHO05D005534 5.7e-12 73.9 52 71.2
Dinv32542 Davidia involucrata HOM05D001461 ORTHO05D005534 7.5e-12 73.6 53 71.7
Actinidia28489 Actinidia chinensis HOM05D001461 ORTHO05D005534 9.7e-12 73.2 50 76.0
TPR.G6688 Trifolium pratense HOM05D001461 ORTHO05D005534 9.7e-12 73.2 53 71.7
ATR0580G205 Amborella trichopoda HOM05D001461 ORTHO05D005534 1.3e-11 72.8 48 77.1
arahy.Tifrunner.gnm1.ann1.PFJ4ZJ Arachis hypogaea HOM05D001461 ORTHO05D005534 1.3e-11 72.8 50 78.0
FvH4_5g03750 Fragaria vesca HOM05D001461 ORTHO05D005534 1.3e-11 72.8 52 73.1
FAN04G2189 Fragaria x ananassa HOM05D001461 ORTHO05D002801 1.3e-11 72.8 52 73.1
FAN08G0967 Fragaria x ananassa HOM05D001461 ORTHO05D005534 1.3e-11 72.8 52 73.1
FAN13G1856 Fragaria x ananassa HOM05D001461 ORTHO05D005534 1.3e-11 72.8 52 73.1
FAN13G2166 Fragaria x ananassa HOM05D001461 ORTHO05D005534 1.3e-11 72.8 52 73.1
Glyma.01G223800 Glycine max HOM05D001461 ORTHO05D005534 1.3e-11 72.8 75 57.3
MBI07_g06330_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 1.3e-11 72.8 49 75.5
MBI15_g19879_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 1.3e-11 72.8 49 75.5
Nn7g37350 Nelumbo nucifera HOM05D001461 ORTHO05D005534 1.3e-11 72.8 49 77.6
Nitab4.5_0000492g0140 Nicotiana tabacum HOM05D001461 ORTHO05D005534 1.3e-11 72.8 53 73.6
Peaxi162Scf00029g02519 Petunia axillaris HOM05D001461 ORTHO05D005534 1.3e-11 72.8 53 69.8
RcHm_v2.0_Chr7g0195901 Rosa chinensis HOM05D001461 ORTHO05D005534 1.3e-11 72.8 52 73.1
CiPaw.12G086700 Carya illinoinensis HOM05D001461 ORTHO05D005534 1.7e-11 72.4 52 71.2
Prupe.1G460500 Prunus persica HOM05D001461 ORTHO05D005534 1.7e-11 72.4 52 71.2
Sed0013897 Sechium edule HOM05D001461 ORTHO05D005534 1.7e-11 72.4 55 69.1
TWI18G0300 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 1.7e-11 72.4 52 73.1
TWI60G0303 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 1.7e-11 72.4 52 73.1
PGR042G3251 Punica granatum HOM05D001461 ORTHO05D005534 2.2e-11 72.0 53 66.0
CAN.G375.83 Capsicum annuum HOM05D001461 ORTHO05D005534 2.8e-11 71.6 50 74.0
Thhalv10023764m.g Eutrema salsugineum HOM05D001461 ORTHO05D005534 2.8e-11 71.6 51 74.5
Zm00001eb376350 Zea mays HOM05D001461 ORTHO05D005534 2.8e-11 71.6 50 72.0
Thecc.02G012600 Theobroma cacao HOM05D001461 ORTHO05D005534 3.7e-11 71.2 52 69.2
Zm00001eb376190 Zea mays HOM05D001461 ORTHO05D005534 3.7e-11 71.2 49 73.5
Zm00001eb376220 Zea mays HOM05D001461 ORTHO05D005534 3.7e-11 71.2 49 73.5
Zm00001eb376260 Zea mays HOM05D001461 ORTHO05D005534 3.7e-11 71.2 49 73.5
Zm00001eb376310 Zea mays HOM05D001461 ORTHO05D005534 3.7e-11 71.2 49 73.5
Zm00001eb376320 Zea mays HOM05D001461 ORTHO05D005534 3.7e-11 71.2 49 73.5
Zm00001eb376910 Zea mays HOM05D001461 ORTHO05D005534 3.7e-11 71.2 49 73.5
Zm00001eb376940 Zea mays HOM05D001461 ORTHO05D005534 3.7e-11 71.2 49 73.5
Actinidia10093 Actinidia chinensis HOM05D001461 ORTHO05D005534 4.8e-11 70.9 53 67.9
MSTRG.20880 Avicennia marina HOM05D001461 ORTHO05D005534 4.8e-11 70.9 52 67.3
CSS0041928 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 4.8e-11 70.9 52 71.2
FvH4_5g27350 Fragaria vesca HOM05D001461 ORTHO05D005534 4.8e-11 70.9 51 72.5
Potri.003G135100 Populus trichocarpa HOM05D001461 ORTHO05D005534 4.8e-11 70.9 50 76.0
PGSC0003DMG400007048 Solanum tuberosum HOM05D001461 ORTHO05D005534 4.8e-11 70.9 50 74.0
Glyma.11G019700 Glycine max HOM05D001461 ORTHO05D005534 6.3e-11 70.5 53 69.8
PSO384G4702 Papaver somniferum HOM05D001461 ORTHO05D005534 6.3e-11 70.5 49 73.5
Rhsim07G0008500 Rhododendron simsii HOM05D001461 ORTHO05D005534 6.3e-11 70.5 50 72.0
Solyc11g062280.2 Solanum lycopersicum HOM05D001461 ORTHO05D005534 6.3e-11 70.5 50 74.0
Sopen11g024260 Solanum pennellii HOM05D001461 ORTHO05D005534 6.3e-11 70.5 50 74.0
PGSC0003DMG401032495 Solanum tuberosum HOM05D001461 ORTHO05D005534 6.3e-11 70.5 50 74.0
AL2G10830 Arabidopsis lyrata HOM05D001461 ORTHO05D005534 8.3e-11 70.1 51 70.6
Manes.02G014100 Manihot esculenta HOM05D001461 ORTHO05D005534 8.3e-11 70.1 52 71.2
Duzib084G0256 Durio zibethinus HOM05D001461 ORTHO05D005534 1.1e-10 69.7 52 65.4
MD14G1117200 Malus domestica HOM05D001461 ORTHO05D005534 1.1e-10 69.7 52 67.3
Cfa012281 Carpinus fangiana HOM05D001461 ORTHO05D005534 1.4e-10 69.3 52 69.2
DCAR_025235 Daucus carota HOM05D001461 ORTHO05D005534 1.4e-10 69.3 53 64.2
HanXRQChr04g0120651 Helianthus annuus HOM05D001461 ORTHO05D005534 1.4e-10 69.3 49 73.5
SGA_v2.0_scaffold4G02266 Striga asiatica HOM05D001461 ORTHO05D005534 1.4e-10 69.3 52 67.3
Aa31LG2G1220 Aethionema arabicum HOM05D001461 ORTHO05D002801 1.8e-10 68.9 51 70.6
BcaB07g31442 Brassica carinata HOM05D001461 ORTHO05D005534 1.8e-10 68.9 51 70.6
BcaB07g31521 Brassica carinata HOM05D001461 ORTHO05D005534 1.8e-10 68.9 51 70.6
BcaC04g22537 Brassica carinata HOM05D001461 ORTHO05D005534 1.8e-10 68.9 51 70.6
BcaC04g22646 Brassica carinata HOM05D001461 ORTHO05D005534 1.8e-10 68.9 51 70.6
A09p14170 Brassica napus HOM05D001461 ORTHO05D005534 1.8e-10 68.9 51 70.6
A09p14930 Brassica napus HOM05D001461 ORTHO05D005534 1.8e-10 68.9 51 70.6
C09p18050 Brassica napus HOM05D001461 ORTHO05D005534 1.8e-10 68.9 51 70.6
BolC9t54702H Brassica oleracea HOM05D001461 ORTHO05D005534 1.8e-10 68.9 51 70.6
BraA09t37065Z Brassica rapa HOM05D001461 ORTHO05D005534 1.8e-10 68.9 51 70.6
BraA09t37138Z Brassica rapa HOM05D001461 ORTHO05D005534 1.8e-10 68.9 51 70.6
CARHR046740 Cardamine hirsuta HOM05D001461 ORTHO05D005534 1.8e-10 68.9 51 70.6
Glyma.15G246700 Glycine max HOM05D001461 ORTHO05D005534 1.8e-10 68.9 53 67.9
Os06g0158700 Oryza sativa ssp. japonica HOM05D001461 ORTHO05D005534 1.8e-10 68.9 48 70.8
Phvul.002G161800 Phaseolus vulgaris HOM05D001461 ORTHO05D005534 1.8e-10 68.9 50 74.0
Sabra03G0097400 Salix brachista HOM05D001461 ORTHO05D005534 1.8e-10 68.9 54 66.7
unitig_62.g23802 Utricularia gibba HOM05D001461 ORTHO05D005534 1.8e-10 68.9 53 62.3
VMungo1215G2099 Vigna mungo HOM05D001461 ORTHO05D005534 1.8e-10 68.9 50 74.0
AT1G64185 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 2.4e-10 68.6 51 70.6
Migut.B01819 Erythranthe guttata HOM05D001461 ORTHO05D005534 4.1e-10 67.8 52 63.5
Migut.E01260 Erythranthe guttata HOM05D001461 ORTHO05D005534 4.1e-10 67.8 52 63.5
Eucgr.E00823 Eucalyptus grandis HOM05D001461 ORTHO05D005534 4.1e-10 67.8 51 64.7
C09p17080 Brassica napus HOM05D001461 ORTHO05D005534 5.3e-10 67.4 51 68.6
BolC9t54606H Brassica oleracea HOM05D001461 ORTHO05D005534 5.3e-10 67.4 51 68.6
Cc03_g08310 Coffea canephora HOM05D001461 ORTHO05D005534 5.3e-10 67.4 55 65.5
FAN18G4081 Fragaria x ananassa HOM05D001461 ORTHO05D005534 5.3e-10 67.4 51 70.6
FAN28G0268 Fragaria x ananassa HOM05D001461 ORTHO05D005534 5.3e-10 67.4 51 68.6
Lj4g0014781 Lotus japonicus HOM05D001461 ORTHO05D005534 5.3e-10 67.4 59 62.7
SGA_v2.0_scaffold95G28797 Striga asiatica HOM05D001461 ORTHO05D005534 5.3e-10 67.4 52 65.4
Thhalv10027655m.g Eutrema salsugineum HOM05D001461 ORTHO05D002801 7.0e-10 67.0 51 68.6
CSS0015159 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 9.1e-10 66.6 52 67.3
CSS0025412 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 9.1e-10 66.6 52 67.3
Lsat_1_v5_gn_7_2481 Lactuca sativa HOM05D001461 ORTHO05D005534 9.1e-10 66.6 49 69.4
SalBow3G1410 Salvia bowleyana HOM05D001461 ORTHO05D005534 9.1e-10 66.6 49 67.3
AT5G41650 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 1.2e-09 66.2 51 66.7
Carub.0002s0062 Capsella rubella HOM05D001461 ORTHO05D005534 1.2e-09 66.2 51 68.6
Aqoxy6G01756 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 2.0e-09 65.5 48 66.7
Aqoxy6G01758 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 2.0e-09 65.5 48 66.7
CARHR212880 Cardamine hirsuta HOM05D001461 ORTHO05D005534 2.0e-09 65.5 51 66.7
ECA233G4373 Erigeron canadensis HOM05D001461 ORTHO05D005534 2.7e-09 65.1 53 62.3
ECA236G4284 Erigeron canadensis HOM05D001461 ORTHO05D005534 2.7e-09 65.1 56 62.5
Migut.E01261 Erythranthe guttata HOM05D001461 ORTHO05D005534 3.5e-09 64.7 48 66.7
HPP92_002836 Vanilla planifolia HOM05D001461 ORTHO05D005534 3.5e-09 64.7 50 66.0
Ah.07g196880 Amaranthus hybridus HOM05D001461 ORTHO05D005534 4.5e-09 64.3 66 53.0
MD08G1130100 Malus domestica HOM05D001461 ORTHO05D005534 4.5e-09 64.3 56 58.9
MD08G1128900 Malus domestica HOM05D001461 ORTHO05D005534 3.8e-08 61.2 53 60.4
AagrBONN_evm.TU.Sc2ySwM_344.4522 Anthoceros agrestis HOM05D001461 ORTHO05D005534 6.5e-08 60.5 51 56.9
Pp3c1_2350 Physcomitrium patens HOM05D001461 ORTHO05D005534 6.5e-08 60.5 43 58.1
Sc01g0010020 Simmondsia chinensis HOM05D001461 ORTHO05D005534 6.5e-08 60.5 49 57.1
Hund27230 Selenicereus undatus HOM05D001461 ORTHO05D005534 1.1e-07 59.7 51 58.8
TPR.G32972 Trifolium pratense HOM05D001461 ORTHO05D005534 5.5e-07 57.4 32 81.2
Sed0026937 Sechium edule HOM05D001461 ORTHO05D005534 7.2e-07 57.0 41 70.7
EL10Ac1g00327 Beta vulgaris HOM05D001461 ORTHO05D005534 2.7e-06 55.1 48 58.3
Mapoly0143s0026 Marchantia polymorpha HOM05D001461 ORTHO05D005534 2.7e-06 55.1 38 60.5
SMO364G0470 Selaginella moellendorffii HOM05D001461 ORTHO05D005534 2.7e-06 55.1 73 42.5
Carub.0007s3383 Capsella rubella HOM05D001461 ORTHO05D005534 4.7e-06 54.3 43 62.8


User provided reference genes

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