Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G012200 Glycine max HOM05D006617 ORTHO05D008247 5.7e-186 654.1 321 100.0
Glyma.05G205300 Glycine max HOM05D006617 ORTHO05D008247 1.1e-155 553.5 290 93.1
Phvul.002G287200 Phaseolus vulgaris HOM05D006617 ORTHO05D008247 1.4e-136 490.0 290 83.8
VMungo0251G0775 Vigna mungo HOM05D006617 ORTHO05D008247 2.0e-130 469.5 291 81.8
Ca_17553_v3 Cicer arietinum L. HOM05D006617 ORTHO05D008247 1.7e-121 439.9 298 74.5
Psat7g035840 Pisum sativum HOM05D006617 ORTHO05D008247 1.0e-118 430.6 291 75.3
arahy.Tifrunner.gnm1.ann1.164QK4 Arachis hypogaea HOM05D006617 ORTHO05D008247 3.9e-118 428.7 291 73.9
arahy.Tifrunner.gnm1.ann1.90PEWX Arachis hypogaea HOM05D006617 ORTHO05D008247 3.9e-118 428.7 291 73.9
Medtr8g096960 Medicago truncatula HOM05D006617 ORTHO05D008247 2.4e-115 419.5 298 70.8
TPR.G12841 Trifolium pratense HOM05D006617 ORTHO05D008247 2.2e-113 412.9 292 71.9
Lalb_Chr05g0224971 Lupinus albus HOM05D006617 ORTHO05D008247 1.6e-111 406.8 293 73.4
Lj4g0017727 Lotus japonicus HOM05D006617 ORTHO05D008247 1.9e-109 399.8 260 77.7
Actinidia14540 Actinidia chinensis HOM05D006617 ORTHO05D008247 7.0e-91 338.2 288 59.0
CiPaw.11G138400 Carya illinoinensis HOM05D006617 ORTHO05D008247 1.5e-90 337.0 244 68.0
QL12p017915 Quercus lobata HOM05D006617 ORTHO05D008247 1.5e-90 337.0 254 65.7
Atru.chr6.3216 Acer truncatum HOM05D006617 ORTHO05D008247 1.4e-88 330.5 268 63.1
GSVIVG01019803001 Vitis vinifera HOM05D006617 ORTHO05D008247 3.2e-88 329.3 238 68.9
CsaV3_4G006040 Cucumis sativus L. HOM05D006617 ORTHO05D008247 4.2e-88 328.9 266 61.3
Ciclev10016122m.g Citrus clementina HOM05D006617 ORTHO05D008247 5.5e-88 328.6 284 59.9
Sed0011813 Sechium edule HOM05D006617 ORTHO05D008247 1.2e-87 327.4 272 59.9
Eucgr.D01883 Eucalyptus grandis HOM05D006617 ORTHO05D008247 4.7e-87 325.5 249 63.9
MELO3C016345.2 Cucumis melo HOM05D006617 ORTHO05D008247 8.0e-87 324.7 272 59.9
CAN.G26.17 Capsicum annuum HOM05D006617 ORTHO05D008247 2.3e-86 323.2 271 57.6
Migut.A00797 Erythranthe guttata HOM05D006617 ORTHO05D008247 3.0e-86 322.8 256 60.5
Prupe.5G095100 Prunus persica HOM05D006617 ORTHO05D008247 1.5e-85 320.5 248 60.9
Lj8A235T58 Lonicera japonica HOM05D006617 ORTHO05D008247 2.0e-85 320.1 247 63.2
Hma1.2p1_0514F.1_g169800 Hydrangea macrophylla HOM05D006617 ORTHO05D008247 3.3e-85 319.3 249 64.3
CSS0023405 Camellia sinensis var. sinensis HOM05D006617 ORTHO05D008247 2.8e-84 316.2 248 62.1
Dinv38979 Davidia involucrata HOM05D006617 ORTHO05D008247 4.8e-84 315.5 231 67.1
MD06G1077000 Malus domestica HOM05D006617 ORTHO05D008247 1.1e-83 314.3 242 63.6
Manes.12G073000 Manihot esculenta HOM05D006617 ORTHO05D008247 1.1e-83 314.3 242 63.2
SalBow6G1063 Salvia bowleyana HOM05D006617 ORTHO05D008247 1.8e-83 313.5 248 60.1
TWI36G1290 Tripterygium wilfordii HOM05D006617 ORTHO05D008247 1.8e-83 313.5 261 60.5
FAN04G2914 Fragaria x ananassa HOM05D006617 ORTHO05D008247 2.4e-83 313.2 248 61.7
Solyc12g056350.2 Solanum lycopersicum HOM05D006617 ORTHO05D008247 2.4e-83 313.2 248 60.9
Sopen12g028920 Solanum pennellii HOM05D006617 ORTHO05D008247 5.3e-83 312.0 248 60.9
PGSC0003DMG400004251 Solanum tuberosum HOM05D006617 ORTHO05D008247 5.3e-83 312.0 248 60.9
Potri.014G154900 Populus trichocarpa HOM05D006617 ORTHO05D008247 7.0e-83 311.6 250 62.0
THA.LOC104800995 Tarenaya hassleriana HOM05D006617 ORTHO05D008247 1.6e-82 310.5 257 60.7
Cpa.g.sc39.21 Carica papaya HOM05D006617 ORTHO05D008247 2.0e-82 310.1 236 63.1
Nn6g33542 Nelumbo nucifera HOM05D006617 ORTHO05D008247 2.0e-82 310.1 232 64.7
Thhalv10017053m.g Eutrema salsugineum HOM05D006617 ORTHO05D008247 5.9e-82 308.5 256 57.8
COL.COLO4_11251 Corchorus olitorius HOM05D006617 ORTHO05D008247 1.3e-81 307.4 266 57.5
RcHm_v2.0_Chr7g0198641 Rosa chinensis HOM05D006617 ORTHO05D008247 2.9e-81 306.2 248 59.7
HanXRQChr12g0384501 Helianthus annuus HOM05D006617 ORTHO05D008247 8.5e-81 304.7 246 60.2
Thecc.02G366400 Theobroma cacao HOM05D006617 ORTHO05D008247 8.5e-81 304.7 258 60.1
Duzib251G0852 Durio zibethinus HOM05D006617 ORTHO05D008247 1.5e-80 303.9 247 60.3
Ah.12g057360 Amaranthus hybridus HOM05D006617 ORTHO05D008247 7.2e-80 301.6 256 57.8
Cc08_g14300 Coffea canephora HOM05D006617 ORTHO05D008247 6.1e-79 298.5 223 65.0
FAN13G2116 Fragaria x ananassa HOM05D006617 ORTHO05D008247 6.1e-79 298.5 241 60.6
Carub.0004s1384 Capsella rubella HOM05D006617 ORTHO05D008247 8.0e-79 298.1 248 58.5
AL4G27880 Arabidopsis lyrata HOM05D006617 ORTHO05D008247 1.0e-78 297.7 248 58.1
EL10Ac5g12764 Beta vulgaris HOM05D006617 ORTHO05D008247 1.4e-78 297.4 274 56.9
Gohir.D12G177000 Gossypium hirsutum HOM05D006617 ORTHO05D008247 1.4e-78 297.4 279 55.2
Gorai.008G189400 Gossypium raimondii HOM05D006617 ORTHO05D008247 1.4e-78 297.4 279 55.2
Sc22g0000340 Simmondsia chinensis HOM05D006617 ORTHO05D008247 3.0e-78 296.2 250 57.6
ECA233G3703 Erigeron canadensis HOM05D006617 ORTHO05D008247 5.2e-78 295.4 223 64.1
BcaB01g03976 Brassica carinata HOM05D006617 ORTHO05D008247 1.2e-77 294.3 251 56.6
DCAR_008412 Daucus carota HOM05D006617 ORTHO05D008247 1.2e-77 294.3 225 63.6
Sp4g14850 Schrenkiella parvula HOM05D006617 ORTHO05D008247 2.0e-77 293.5 249 56.6
Gohir.A12G174300 Gossypium hirsutum HOM05D006617 ORTHO05D008247 4.4e-77 292.4 279 54.5
A03p18190 Brassica napus HOM05D006617 ORTHO05D008247 2.2e-76 290.0 252 56.3
BraA03t11079Z Brassica rapa HOM05D006617 ORTHO05D008247 2.2e-76 290.0 252 56.3
Lsat_1_v5_gn_6_6941 Lactuca sativa HOM05D006617 ORTHO05D008247 4.8e-76 288.9 248 56.9
BcaC01g05904 Brassica carinata HOM05D006617 ORTHO05D008247 6.3e-76 288.5 252 56.0
C03p21220 Brassica napus HOM05D006617 ORTHO05D008247 2.4e-75 286.6 252 55.6
BolC3t14504H Brassica oleracea HOM05D006617 ORTHO05D008247 2.4e-75 286.6 252 55.6
FvH4_5g01880 Fragaria vesca HOM05D006617 ORTHO05D008247 9.1e-75 284.6 219 64.4
FAN18G0570 Fragaria x ananassa HOM05D006617 ORTHO05D008247 3.5e-74 282.7 219 63.9
PSO782G1088 Papaver somniferum HOM05D006617 ORTHO05D008247 7.7e-74 281.6 235 58.7
Aa31LG5G4800 Aethionema arabicum HOM05D006617 ORTHO05D008247 1.3e-73 280.8 249 56.2
PSO478G3588 Papaver somniferum HOM05D006617 ORTHO05D008247 1.3e-73 280.8 235 58.3
FAN08G3651 Fragaria x ananassa HOM05D006617 ORTHO05D008247 6.5e-73 278.5 219 63.0
Sabra14G0117100 Salix brachista HOM05D006617 ORTHO05D008247 1.6e-71 273.9 222 62.6
ATR0680G238 Amborella trichopoda HOM05D006617 ORTHO05D008247 1.4e-70 270.8 226 57.1
PGR031G1807 Punica granatum HOM05D006617 ORTHO05D008247 6.8e-70 268.5 230 60.4
TAR375G0379 Trochodendron aralioides HOM05D006617 ORTHO05D008247 2.0e-69 266.9 196 67.9
Hund11496 Selenicereus undatus HOM05D006617 ORTHO05D008247 8.3e-68 261.5 217 60.4
Peaxi162Scf01294g00327 Petunia axillaris HOM05D006617 ORTHO05D008247 1.1e-67 261.2 247 54.7
ClCG07G007980 Citrullus lanatus HOM05D006617 ORTHO05D008247 5.4e-67 258.8 263 51.0
HPP92_004974 Vanilla planifolia HOM05D006617 ORTHO05D008247 5.4e-67 258.8 256 50.0
AUR62017243 Chenopodium quinoa HOM05D006617 ORTHO05D008247 5.9e-66 255.4 218 58.7
Os03g0110900 Oryza sativa ssp. japonica HOM05D006617 ORTHO05D008247 8.6e-65 251.5 267 48.7
Haze_08904 Corylus avellana HOM05D006617 ORTHO05D008247 3.3e-64 249.6 216 58.3
Haze_08908 Corylus avellana HOM05D006617 ORTHO05D008247 4.2e-64 249.2 216 58.3
AUR62010601 Chenopodium quinoa HOM05D000030 ORTHO05D008247 1.6e-63 247.3 195 61.0
Zm00001eb404120 Zea mays HOM05D006617 ORTHO05D008247 8.3e-60 235.0 226 49.1
Oeu025101.1 Olea europaea HOM05D006617 ORTHO05D008247 5.9e-58 228.8 165 66.7
MBI18_g01147_MAGBIO Magnolia biondii HOM05D006617 ORTHO05D008247 1.9e-56 223.8 190 58.9
SEGI_22684 Sequoiadendron giganteum HOM05D006617 ORTHO05D008247 1.2e-55 221.1 228 46.9
AT2G32500 Arabidopsis thaliana HOM05D006617 ORTHO05D008247 2.1e-55 220.3 182 59.9
SGA_v2.0_scaffold146G36248 Striga asiatica HOM05D006617 ORTHO05D008247 3.1e-54 216.5 178 59.0
Nitab4.5_0010198g0030 Nicotiana tabacum HOM05D006617 ORTHO05D008247 1.2e-53 214.5 248 48.0
Actinidia02025 Actinidia chinensis HOM05D006617 ORTHO05D008247 3.4e-53 213.0 182 61.5
Nitab4.5_0000360g0080 Nicotiana tabacum HOM05D006617 ORTHO05D008247 9.5e-48 194.9 181 54.7
SMO329G0076 Selaginella moellendorffii HOM05D006617 ORTHO05D008247 4.9e-44 182.6 221 40.7
Hma1.2p1_3255F.1_g334560 Hydrangea macrophylla HOM05D006617 ORTHO05D008247 7.1e-43 178.7 182 53.3
Pp3c20_8200 Physcomitrium patens HOM05D006617 ORTHO05D008247 7.8e-42 175.3 224 41.5
Nitab4.5_0029474g0010 Nicotiana tabacum HOM05D006617 ORTHO05D008247 1.0e-41 174.9 137 59.9
CARHR126330 Cardamine hirsuta HOM05D006617 ORTHO05D008247 6.6e-41 172.2 134 59.0
Aqoxy7G00382 Aquilegia oxysepala HOM05D006617 ORTHO05D008247 6.8e-38 162.2 133 59.4
AagrBONN_evm.TU.Sc2ySwM_228.4793 Anthoceros agrestis HOM05D006617 ORTHO05D008247 1.5e-37 161.0 234 36.8
Glyma.05G087800 Glycine max HOM05D006617 ORTHO05D008247 7.8e-34 148.7 79 93.7
MSTRG.12003 Avicennia marina HOM05D006617 ORTHO05D008247 2.1e-31 140.6 113 54.9
Aqoxy7G00383 Aquilegia oxysepala HOM05D006617 ORTHO05D008247 8.9e-30 135.2 97 63.9
Mapoly0086s0005 Marchantia polymorpha HOM05D006617 ORTHO05D008247 6.4e-28 129.0 225 32.4
Pp3c7_1410 Physcomitrium patens HOM05D006617 ORTHO05D008247 1.0e-25 121.7 193 34.7
Mapoly0086s0010 Marchantia polymorpha HOM05D006617 ORTHO05D008247 8.7e-25 118.6 230 28.3
AUR62042944 Chenopodium quinoa HOM05D006617 ORTHO05D008247 2.5e-24 117.1 136 46.3
Lsat_1_v5_gn_8_1081 Lactuca sativa HOM05D006617 ORTHO05D008247 8.7e-17 92.0 103 50.5
PRCOL_00003136 Prasinoderma coloniale HOM05D006617 ORTHO05D008247 1.9e-16 90.9 201 28.4
Pp3c8_19270 Physcomitrium patens HOM05D006617 ORTHO05D008247 4.3e-16 89.7 225 28.0
CBR_g57728 Chara braunii HOM05D006617 ORTHO05D008247 1.2e-10 71.6 165 30.3
MD14G1098400 Malus domestica HOM05D006617 ORTHO05D008247 1.6e-10 71.2 68 60.3
Gorai.009G034900 Gossypium raimondii HOM05D003252 ORTHO05D003640 5.1e-09 66.2 204 28.9
Aa31sc893G10 Aethionema arabicum HOM05D003252 ORTHO05D003640 8.7e-09 65.5 217 24.9
CDE06G1437 Ceratophyllum demersum HOM05D006617 ORTHO05D008247 2.5e-08 63.9 98 40.8
Gohir.A07G014600 Gossypium hirsutum HOM05D003252 ORTHO05D003640 5.6e-08 62.8 258 24.8
Gohir.D05G034500 Gossypium hirsutum HOM05D003252 ORTHO05D003640 7.4e-08 62.4 204 28.4
Ciclev10012522m.g Citrus clementina HOM05D003252 ORTHO05D003640 3.7e-07 60.1 207 23.7
Gohir.D07G014300 Gossypium hirsutum HOM05D003252 ORTHO05D003640 3.7e-07 60.1 208 26.0
Gorai.001G015100 Gossypium raimondii HOM05D003252 ORTHO05D003640 3.7e-07 60.1 248 24.2
Aa31sc437G20 Aethionema arabicum HOM05D003252 ORTHO05D003640 8.1e-07 58.9 218 23.4
BolC1t03946H Brassica oleracea HOM05D003252 ORTHO05D003640 1.1e-06 58.5 217 24.4
COL.COLO4_18119 Corchorus olitorius HOM05D003252 ORTHO05D003640 1.4e-06 58.2 204 27.5
C01p39910 Brassica napus HOM05D003252 ORTHO05D003640 1.8e-06 57.8 217 24.4
Sp3g21430 Schrenkiella parvula HOM05D003252 ORTHO05D003640 3.1e-06 57.0 246 22.4
A01p31300 Brassica napus HOM05D003252 ORTHO05D003640 4.0e-06 56.6 217 24.4
BraA01t03256Z Brassica rapa HOM05D003252 ORTHO05D003640 6.9e-06 55.8 217 24.4
Hma1.2p1_0797F.1_g219490 Hydrangea macrophylla HOM05D003252 ORTHO05D003640 9.0e-06 55.5 219 22.8


User provided reference genes

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