Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G008300 Glycine max HOM05D006060 ORTHO05D007268 2.9e-64 248.4 128 100.0
Glyma.05G201000 Glycine max HOM05D006060 ORTHO05D007268 5.6e-60 234.2 128 96.1
Phvul.002G282400 Phaseolus vulgaris HOM05D006060 ORTHO05D007268 2.1e-59 232.3 128 93.0
VMungo0251G0770 Vigna mungo HOM05D006060 ORTHO05D007268 1.8e-58 229.2 128 91.4
Ca_24569_v3 Cicer arietinum L. HOM05D006060 ORTHO05D007268 4.2e-55 218.0 130 85.4
Lj2g0026655 Lotus japonicus HOM05D006060 ORTHO05D007268 1.8e-53 212.6 128 85.2
Psat2g129720 Pisum sativum HOM05D006060 ORTHO05D007268 1.5e-52 209.5 131 84.0
arahy.Tifrunner.gnm1.ann1.GS86GR Arachis hypogaea HOM05D006060 ORTHO05D007268 1.3e-51 206.5 125 82.4
Potri.010G159200 Populus trichocarpa HOM05D006060 ORTHO05D007268 2.4e-50 202.2 125 82.4
Atru.chr11.1651 Acer truncatum HOM05D006060 ORTHO05D007268 2.0e-49 199.1 126 80.2
CANSAT64G1324 Cannabis sativa HOM05D006060 ORTHO05D007268 2.0e-49 199.1 128 81.2
Lalb_Chr04g0255711 Lupinus albus HOM05D006060 ORTHO05D007268 2.6e-49 198.7 124 80.6
Medtr5g044200 Medicago truncatula HOM05D006060 ORTHO05D007268 3.4e-49 198.4 129 79.1
Prupe.1G285900 Prunus persica HOM05D006060 ORTHO05D007268 4.5e-49 198.0 121 83.5
RcHm_v2.0_Chr4g0438511 Rosa chinensis HOM05D006060 ORTHO05D007268 1.0e-48 196.8 117 86.3
MD13G1063500 Malus domestica HOM05D006060 ORTHO05D007268 1.3e-48 196.4 126 81.7
MD16G1062000 Malus domestica HOM05D006060 ORTHO05D007268 1.7e-48 196.1 128 80.5
Manes.01G028500 Manihot esculenta HOM05D006060 ORTHO05D007268 5.0e-48 194.5 128 78.9
Thecc.02G332700 Theobroma cacao HOM05D006060 ORTHO05D007268 8.4e-48 193.7 126 78.6
FvH4_4g30180 Fragaria vesca HOM05D006060 ORTHO05D007268 1.1e-47 193.4 115 85.2
PGR102G1832 Punica granatum HOM05D006060 ORTHO05D007268 1.1e-47 193.4 125 77.6
Potri.008G095100 Populus trichocarpa HOM05D006060 ORTHO05D007268 1.9e-47 192.6 124 79.0
CiPaw.06G092000 Carya illinoinensis HOM05D006060 ORTHO05D007268 2.5e-47 192.2 130 77.7
TPR.G24456 Trifolium pratense HOM05D006060 ORTHO05D007268 4.2e-47 191.4 114 84.2
Gohir.A13G081800 Gossypium hirsutum HOM05D006060 ORTHO05D007268 9.3e-47 190.3 121 80.2
Gohir.D13G081600 Gossypium hirsutum HOM05D006060 ORTHO05D007268 9.3e-47 190.3 121 80.2
Gorai.013G093500 Gossypium raimondii HOM05D006060 ORTHO05D007268 9.3e-47 190.3 121 80.2
MELO3C012147.2 Cucumis melo HOM05D006060 ORTHO05D007268 1.2e-46 189.9 130 76.2
CsaV3_5G033260 Cucumis sativus L. HOM05D006060 ORTHO05D007268 1.2e-46 189.9 130 76.2
Sc11g0002390 Simmondsia chinensis HOM05D006060 ORTHO05D007268 2.1e-46 189.1 118 81.4
Duzib248G0204 Durio zibethinus HOM05D006060 ORTHO05D007268 4.6e-46 188.0 124 77.4
Sed0026741 Sechium edule HOM05D006060 ORTHO05D007268 1.0e-45 186.8 130 73.1
Duzib251G0249 Durio zibethinus HOM05D006060 ORTHO05D007268 2.3e-45 185.7 124 76.6
PSO017G1874 Papaver somniferum HOM05D006060 ORTHO05D007268 3.0e-45 185.3 118 75.4
Carub.0001s2455 Capsella rubella HOM05D006060 ORTHO05D007268 3.9e-45 184.9 130 74.6
FAN22G0197 Fragaria x ananassa HOM05D006060 ORTHO05D007268 3.9e-45 184.9 122 79.5
BcaB03g14067 Brassica carinata HOM05D006060 ORTHO05D007268 5.1e-45 184.5 121 76.9
Sp1g22270 Schrenkiella parvula HOM05D006060 ORTHO05D007268 6.7e-45 184.1 121 76.9
Nn4g23399 Nelumbo nucifera HOM05D006060 ORTHO05D007268 1.5e-44 183.0 118 80.5
HPP92_014051 Vanilla planifolia HOM05D006060 ORTHO05D007268 1.5e-44 183.0 130 72.3
CARHR025490 Cardamine hirsuta HOM05D006060 ORTHO05D007268 1.9e-44 182.6 130 73.8
PSO478G3582 Papaver somniferum HOM05D006060 ORTHO05D007268 1.9e-44 182.6 118 74.6
TAR622G0987 Trochodendron aralioides HOM05D006060 ORTHO05D007268 1.9e-44 182.6 120 75.8
ClCG00G002570 Citrullus lanatus HOM05D006060 ORTHO05D007268 2.5e-44 182.2 143 69.9
ClCG05G023750 Citrullus lanatus HOM05D006060 ORTHO05D007268 2.5e-44 182.2 143 69.9
Ciclev10033030m.g Citrus clementina HOM05D006060 ORTHO05D007268 5.7e-44 181.0 115 78.3
QL03p072164 Quercus lobata HOM05D006060 ORTHO05D007268 7.4e-44 180.6 153 64.7
QL03p072544 Quercus lobata HOM05D006060 ORTHO05D007268 7.4e-44 180.6 153 64.7
HanXRQChr12g0375301 Helianthus annuus HOM05D006060 ORTHO05D007268 1.3e-43 179.9 120 75.8
MBI16_g10268_MAGBIO Magnolia biondii HOM05D006060 ORTHO05D007268 1.3e-43 179.9 118 77.1
Dinv34077 Davidia involucrata HOM05D006060 ORTHO05D007268 2.8e-43 178.7 121 76.0
Thhalv10009087m.g Eutrema salsugineum HOM05D006060 ORTHO05D007268 3.7e-43 178.3 114 78.9
Aqoxy3G00506 Aquilegia oxysepala HOM05D006060 ORTHO05D007268 8.2e-43 177.2 115 76.5
Lsat_1_v5_gn_3_55960 Lactuca sativa HOM05D006060 ORTHO05D007268 1.4e-42 176.4 125 72.0
THA.LOC104822014 Tarenaya hassleriana HOM05D006060 ORTHO05D007268 1.4e-42 176.4 114 78.1
MD02G1257200 Malus domestica HOM05D006060 ORTHO05D007268 3.1e-42 175.3 128 73.4
ATR0064G055 Amborella trichopoda HOM05D006060 ORTHO05D007268 4.1e-42 174.9 116 77.6
Eucgr.G02454 Eucalyptus grandis HOM05D006060 ORTHO05D007268 4.1e-42 174.9 114 78.9
AT1G26470 Arabidopsis thaliana HOM05D006060 ORTHO05D007268 5.3e-42 174.5 114 77.2
HanXRQChr15g0477061 Helianthus annuus HOM05D006060 ORTHO05D007268 9.0e-42 173.7 120 74.2
Medtr6g053980 Medicago truncatula HOM05D006060 ORTHO05D007268 9.0e-42 173.7 124 71.8
Aa31LG7G8620 Aethionema arabicum HOM05D006060 ORTHO05D007268 1.2e-41 173.3 135 68.9
EL10Ac6g14984 Beta vulgaris HOM05D006060 ORTHO05D007268 1.5e-41 172.9 131 71.0
A09p39890 Brassica napus HOM05D006060 ORTHO05D007268 2.0e-41 172.6 128 72.7
AL1G39270 Arabidopsis lyrata HOM05D006060 ORTHO05D007268 2.6e-41 172.2 114 75.4
TWI31G0802 Tripterygium wilfordii HOM05D006060 ORTHO05D007268 2.6e-41 172.2 126 73.0
Hund05841 Selenicereus undatus HOM05D006060 ORTHO05D007268 5.9e-41 171.0 127 73.2
ECA246G0948 Erigeron canadensis HOM05D006060 ORTHO05D007268 7.7e-41 170.6 116 74.1
CSS0014880 Camellia sinensis var. sinensis HOM05D006060 ORTHO05D007268 2.9e-40 168.7 116 74.1
C05p24530 Brassica napus HOM05D006060 ORTHO05D007268 1.1e-39 166.8 111 76.6
C07p19380 Brassica napus HOM05D006060 ORTHO05D007268 1.1e-39 166.8 136 66.9
Dinv16724 Davidia involucrata HOM05D006060 ORTHO05D007268 1.9e-39 166.0 113 74.3
arahy.Tifrunner.gnm1.ann1.KWWI2Y Arachis hypogaea HOM05D006060 ORTHO05D007268 4.2e-39 164.9 138 65.9
GSVIVG01012208001 Vitis vinifera HOM05D006060 ORTHO05D007268 4.2e-39 164.9 117 71.8
Os05g0512500 Oryza sativa ssp. japonica HOM05D006060 ORTHO05D007268 5.5e-39 164.5 117 70.9
BcaC06g35142 Brassica carinata HOM05D006060 ORTHO05D007268 7.2e-39 164.1 111 75.7
A07p12940 Brassica napus HOM05D006060 ORTHO05D007268 7.2e-39 164.1 119 73.1
SEGI_32210 Sequoiadendron giganteum HOM05D006060 ORTHO05D007268 2.1e-38 162.5 115 73.0
BolC7t42457H Brassica oleracea HOM05D006060 ORTHO05D007268 2.7e-38 162.2 118 72.9
CAN.G616.32 Capsicum annuum HOM05D006060 ORTHO05D007268 1.4e-37 159.8 123 66.7
Hund25185 Selenicereus undatus HOM05D006060 ORTHO05D007268 1.8e-37 159.5 157 58.6
BolC5t31187H Brassica oleracea HOM05D006060 ORTHO05D007268 5.1e-37 157.9 137 64.2
PGSC0003DMG400028321 Solanum tuberosum HOM05D006060 ORTHO05D007268 8.8e-37 157.1 116 68.1
Sopen05g007220 Solanum pennellii HOM05D006060 ORTHO05D007268 2.0e-36 156.0 116 67.2
Oeu048147.1 Olea europaea HOM05D006060 ORTHO05D007268 3.3e-36 155.2 118 64.4
AUR62003112 Chenopodium quinoa HOM05D006060 ORTHO05D007268 4.3e-36 154.8 178 52.8
Solyc05g012400.4 Solanum lycopersicum HOM05D006060 ORTHO05D007268 4.3e-36 154.8 116 66.4
Lalb_Chr10g0098731 Lupinus albus HOM05D006060 ORTHO05D007268 1.3e-35 153.3 122 67.2
Zm00001eb292660 Zea mays HOM05D006060 ORTHO05D007268 1.3e-35 153.3 107 75.7
FAN07G0043 Fragaria x ananassa HOM05D006060 ORTHO05D007268 6.3e-35 151.0 115 72.2
Sabra10G0120900 Salix brachista HOM05D006060 ORTHO05D007268 8.2e-35 150.6 126 67.5
CDE02G4092 Ceratophyllum demersum HOM05D006060 ORTHO05D007268 1.1e-34 150.2 118 67.8
MSTRG.7750 Avicennia marina HOM05D006060 ORTHO05D007268 3.1e-34 148.7 115 68.7
FAN12G2760 Fragaria x ananassa HOM05D006060 ORTHO05D007268 5.3e-34 147.9 115 71.3
SGA_v2.0_scaffold36G14451 Striga asiatica HOM05D006060 ORTHO05D007268 9.1e-34 147.1 113 66.4
SalBow2G0810 Salvia bowleyana HOM05D006060 ORTHO05D007268 4.5e-33 144.8 114 64.0
Migut.L01198 Erythranthe guttata HOM05D006060 ORTHO05D007268 5.9e-33 144.4 116 65.5
FAN17G1885 Fragaria x ananassa HOM05D006060 ORTHO05D007268 7.7e-33 144.1 113 70.8
unitig_747.g21188 Utricularia gibba HOM05D006060 ORTHO05D007268 1.4e-31 139.8 114 62.3
Ah.03g138960 Amaranthus hybridus HOM05D006060 ORTHO05D007268 5.5e-31 137.9 123 63.4
BraA07t29067Z Brassica rapa HOM05D006060 ORTHO05D007268 5.5e-31 137.9 124 62.1
Peaxi162Scf00175g00019 Petunia axillaris HOM05D006060 ORTHO05D007268 2.7e-30 135.6 90 71.1
Sabra08G0071500 Salix brachista HOM05D006060 ORTHO05D007268 4.7e-30 134.8 166 50.6
AagrBONN_evm.TU.Sc2ySwM_228.4858 Anthoceros agrestis HOM05D006821 ORTHO05D007268 1.0e-29 133.7 133 56.4
SGA_v2.0_scaffold16G07773 Striga asiatica HOM05D006060 ORTHO05D007268 1.4e-29 133.3 126 56.3
SMO351G0453 Selaginella moellendorffii HOM05D006060 ORTHO05D007268 1.8e-29 132.9 106 60.4
Nitab4.5_0000231g0430 Nicotiana tabacum HOM05D006060 ORTHO05D007268 3.0e-29 132.1 88 69.3
PGSC0003DMG400042856 Solanum tuberosum HOM05D006060 ORTHO05D007268 3.0e-29 132.1 126 56.3
BraA09t39488Z Brassica rapa HOM05D006060 ORTHO05D007268 1.1e-28 130.2 98 67.3
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 2.0e-28 129.4 85 71.8
A03p24590 Brassica napus HOM05D006060 ORTHO05D007268 4.4e-28 128.3 110 65.5
BraA09t39056Z Brassica rapa HOM05D006060 ORTHO05D007268 1.3e-27 126.7 110 64.5
Sopen05g007230 Solanum pennellii HOM05D006060 ORTHO05D007268 1.7e-27 126.3 126 54.8
Solyc05g012410.2 Solanum lycopersicum HOM05D006060 ORTHO05D007268 3.7e-27 125.2 126 54.8
AUR62007927 Chenopodium quinoa HOM05D006060 ORTHO05D007268 4.8e-27 124.8 178 44.4
Mapoly0056s0111 Marchantia polymorpha HOM05D006060 ORTHO05D007268 4.8e-27 124.8 112 58.9
Nitab4.5_0004171g0060 Nicotiana tabacum HOM05D006060 ORTHO05D007268 4.5e-25 118.2 84 67.9
Actinidia28644 Actinidia chinensis HOM05D006060 ORTHO05D007268 1.7e-24 116.3 121 56.2
Haze_11918 Corylus avellana HOM05D006060 ORTHO05D007268 2.2e-24 115.9 70 78.6
Pp3c14_19070 Physcomitrium patens HOM05D006060 ORTHO05D007268 2.2e-24 115.9 101 59.4
COL.COLO4_27898 Corchorus olitorius HOM05D006060 ORTHO05D007268 1.9e-23 112.8 69 78.3
PGSC0003DMG400041308 Solanum tuberosum HOM05D006060 ORTHO05D007268 8.0e-22 107.5 108 57.4
Cc11_g12110 Coffea canephora HOM05D006060 ORTHO05D007268 4.4e-20 101.7 70 65.7
C02p24560 Brassica napus HOM05D006060 ORTHO05D007268 5.3e-18 94.7 81 60.5
A07p29750 Brassica napus HOM05D006060 ORTHO05D007268 9.4e-15 84.0 81 61.7
TPR.G29681 Trifolium pratense HOM05D006060 ORTHO05D007268 1.2e-14 83.6 60 68.3
CBR_g4585 Chara braunii HOM05D006060 ORTHO05D007268 1.6e-14 83.2 66 57.6
BcaB03g11990 Brassica carinata HOM05D006060 ORTHO05D007268 3.4e-12 75.5 49 71.4
Cc11_g12100 Coffea canephora HOM05D006060 ORTHO05D007268 3.1e-10 68.9 64 60.9
DCAR_007189 Daucus carota HOM05D006060 ORTHO05D007268 3.1e-10 68.9 48 68.8
SHI21665 Sapria himalayana HOM05D000105 ORTHO05D000023 3.6e-06 55.5 58 58.6
Duzib251G0730 Durio zibethinus HOM05D006060 ORTHO05D007268 4.7e-06 55.1 39 64.1


User provided reference genes

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